BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18690.1 Length=1042 Score E Sequences producing significant alignments: (Bits) Value Ahg492990 jgi|Araly1|492990|fgenesh2_kg.7__2423__AT4G18690.1 1443 0.0 Ahg492991 jgi|Araly1|492991|fgenesh2_kg.7__2424__AT4G18680.1 601 4e-171 > Ahg492990 jgi|Araly1|492990|fgenesh2_kg.7__2423__AT4G18690.1 Length=1042 Score = 1443 bits (781), Expect = 0.0 Identities = 962/1046 (92%), Gaps = 25/1046 (2%) Strand=Plus/Plus Query 1 ATTCACGAACTAACCAACGAAGAAAGATGGCGACTAGTTCTTCGAGTTATGGGATTGAAC 60 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 1 ATTCACGAACTAACCAACGAAGAGAGATGGCGACTAGTTCTTCGAGTTGTGGGATTGAAC 60 Query 61 AACTTCAAAAAGGATGTTACTATGAGTGGATGAGTGTGCAGGCTAAACACATAGTTGATC 120 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct 61 AACTTCAAAAAGGATGTTACTATGAGTGGATGAGTGTACAAGCTACACACATAGTTGATC 120 Query 121 TCAAAGAAGCACTCATGAGTCATCGATCCAAAGAAGATCACAAGCTTGAAGAACTCGTTG 180 ||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| | Sbjct 121 TCAAAGAAGCACTCACGAGTCATCGATCCAAAGACGATCACAAGCTTGAAGAAGTCGTAG 180 Query 181 GTAAAATCGTCAATGACTTCCAAAAATACACCGAAAAACGATCTGAGCTCTCTCGCCGAA 240 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 181 GTAAAATCGTCAATGACTTCCAAAAATACACCGAAAAACGATCCGAGCTCTCTCGCCGAA 240 Query 241 GCTGCTCAAGCTACTTTGCACCGTCGTGGAACTCTCCTCTAGAGAACGGTTTACTATGGA 300 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 241 GCTGCTCAAGCTACTTTGCACCGTCGTGGAACTCTTCTCTAGAGAACGGTTTACTATGGA 300 Query 301 TGGGAGGATGTCGTCCATCGTCTTTCATTAGAGTTATTTACTCTCTTTGTGGATCCCAAG 360 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 301 TGGGAGGATGTCGTCCTTCGTCCTTCATTAGAGTTATTTACTCTCTTTGTGGATCCCAAG 360 Query 361 CCGAAACGCAGCTTTCTCAGTATCTTCTAAAGATCGATGAAAATGTCGAAGTAAACCATG 420 | |||||||||||||||||||||||||| ||| |||||||||| ||||||| |||||| | Sbjct 361 CTGAAACGCAGCTTTCTCAGTATCTTCTCAAGGTCGATGAAAACGTCGAAGAAAACCAAG 420 Query 421 GTGGTTCCATGAGTGATCTAAACGCGTCGCAGCTTGCAAAAATCAATGATTTGCATATAA 480 ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 421 GTGGTTCCATGAGTGATCTTAACGCGACGCAGCTTGCAAAAATCAATGATTTGCATATAC 480 Query 481 AGGTTATAGAGAAAGAGGACAAGATAACAAAGAAATCGGCGAATTTGCAAGAGAATGTTG 540 ||||||||||||| || ||||||||||||||||||||||||||| |||||||| |||||| Sbjct 481 AGGTTATAGAGAAGGAAGACAAGATAACAAAGAAATCGGCGAATCTGCAAGAGGATGTTG 540 Query 541 CGGATATGCCTATAGCCATCGCGGCTTATGCCACGGACTTGATGAATGGTGACGTGGTGG 600 ||||||||||||| |||||||||||||| |||||||| ||| || ||||||||||| ||| Sbjct 541 CGGATATGCCTATCGCCATCGCGGCTTACGCCACGGATTTGGTGGATGGTGACGTGCTGG 600 Query 601 TGGAAGATGCTTTAGATAAGTATGAGGAGGGCATGGCGGTTTTAATGGTGGAAGCTGATA 660 |||| ||||||||||||||| | ||||||| |||||||||||||||| ||||||||||| Sbjct 601 TGGAGGATGCTTTAGATAAGCACGAGGAGGACATGGCGGTTTTAATGACGGAAGCTGATA 660 Query 661 AACTGAGGTTTGAGACGCTTAGGAAGATCGTGGATGTTGTTACGCCGGTTCAAGCGGCGG 720 | ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || | Sbjct 661 AGCTGAGGTTTGAGACGCTTAGGAAAATCGTGGAGGTTGTTACTCCGGTTCAAGCCGCTG 720 Query 721 AGTTTTTGCTCGCAGGGAAAAGATTACACATATCATTGCACGAGTGGGGAAGAGTTAGAG 780 ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AGTTTTTACTCGCCGGTAAAAGATTACACATATCATTGCACGAGTGGGGAAGAGTTAGAG 780 Query 781 AAGAGCA-ACGTTTTGGGTGTGTACGTACGGATGCAGCGGCTGCCACGGGAGGAGCGGGA 839 ||||| | |||||||| ||||| ||||||||||||||| ||||||||||||||||| ||| Sbjct 781 AAGAG-AGACGTTTTGAGTGTGCACGTACGGATGCAGCCGCTGCCACGGGAGGAGCAGGA 839 Query 840 ACCGAGAAGTCAAAGAGGTCAAGC---TTGTTGATGTGAGTTT-A-----AAGTTGAATA 890 ||||||||||||||||| ||| || |||||||||||||| | | |||||||||| Sbjct 840 ACCGAGAAGTCAAAGAGATCA-GCCACTTGTTGATGTGAGTGTGAGTTTGAAGTTGAATA 898 Query 891 TATATAACTTGTGTTATATTTGTCTATGTAGAGAT-A-A-A-A---TCG-T-GT-T-TAA 939 |||||||||||||| ||||||||||| |||||||| | | | | ||| | || | ||| Sbjct 899 TATATAACTTGTGTAATATTTGTCTAAGTAGAGATCATATATAAGATCGATCGTGTCTAA 958 Query 940 GTGTCTTTATGTGTAATATATGTATGAGAGAGTGCGGCTAGTTTCGAGATGATGCAAGCA 999 ||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||| Sbjct 959 GTGTCTTTATGTGTAATATGTGTATGAGAGT-T-CGACTAGTTTCGAGATGATGCAAGCA 1016 Query 1000 TAAGCTTTTGCTTTTGTCTTATATAA 1025 ||||||||||| |||||||||||||| Sbjct 1017 TAAGCTTTTGCCTTTGTCTTATATAA 1042 > Ahg492991 jgi|Araly1|492991|fgenesh2_kg.7__2424__AT4G18680.1 Length=708 Score = 601 bits (325), Expect = 4e-171 Identities = 574/690 (83%), Gaps = 34/690 (5%) Strand=Plus/Plus Query 103 CTAAACACATAGTTGATCTCAAAGAAGCACTCATGAGTCATCGATCCAAAGAA-GATCAC 161 |||||||||||| ||||||||||||||||||||| |||| | | ||| || |||||| Sbjct 14 CTAAACACATAGAGGATCTCAAAGAAGCACTCATGTGTCA---A-CAAAACAACGATCAC 69 Query 162 -AAGCTTGAAGAACTCGTTGGTAAAATCGTCAATGACTTCCAAAAATA--CACCGAAAAA 218 ||| | ||||| || |||||||||||||||||||||||||||| ||| || ||||| Sbjct 70 AAAG-TCGAAGACCTAGTTGGTAAAATCGTCAATGACTTCCAAACATATGCAA-GAAAA- 126 Query 219 CGATCTGAGCTCTCTCGCCGAAGCTGCTC-AAGCTACTTTGCACCGTCGTGGAACTCTCC 277 ||||| |||||||| | |||| ||||| | || ||||||||||||||| ||||||||||| Sbjct 127 CGATCAGAGCTCTCGCACCGATGCTGCGCTAA-CTACTTTGCACCGTCATGGAACTCTCC 185 Query 278 TCTAGAGAACGGTTTACTATGGATGGGAGGATGTCGTCCATCGTCTTTCATTAGAGTTAT 337 | |||||||| || | ||||||||||||||||||||||| || |||||||||||| |||| Sbjct 186 TATAGAGAACAGTATGCTATGGATGGGAGGATGTCGTCCTTCTTCTTTCATTAGACTTAT 245 Query 338 TTACTCTCTTTGTGGATCCCAAGCCGAAACGCAGCTTTCTCAGTATCTTCTAAAGATCGA 397 ||| | |||||||||||||| |||||||| | |||| |||| ||||||| | ||||| Sbjct 246 ATACGCGCTTTGTGGATCCCAGGCCGAAACTCTGCTTACTCAAAATCTTCTTCATATCGA 305 Query 398 TGAAAA-TGTCGAAGTAAACCATGGTGGTTCCATGAGTGATCTAAACGCGTCGCAGCTTG 456 |||||| | | || |||||||||||||||| |||||||||||| | |||| | ||||||| Sbjct 306 TGAAAACTTT-GACGTAAACCATGGTGGTTTCATGAGTGATCTTACCGCGACACAGCTTG 364 Query 457 CAAAAATCAATGATTTGCATAT-AAAGGTTATAGAGAAAGAGGACAAGATAACAAAGAAA 515 |||||||||||| |||||||| |||| | ||| ||||||| |||||||| || |||| | Sbjct 365 AAAAAATCAATGAGTTGCATATGAAAG-TAATAAAGAAAGAAGACAAGATTACGAAGACA 423 Query 516 TCGGCGAATTTGCAAGA-GAATGTTGCGGATATGCCTATAGCCATCGCGGCTTATGCCAC 574 || |||||||| ||||| || ||| ||||||||||| | | |||||| ||| Sbjct 424 TCTGCGAATTTTCAAGACGA-TGTGGCGGATATGCC-A-A----TCGCGG---ATGT--- 470 Query 575 GGACTTGATGAATGGTGACGTGGTGGTGGAAGATGCTTTAGATAAGTATGAGGAGGGCAT 634 || | | || ||||||| | | |||||| |||||||| |||||| |||| ||||| || Sbjct 471 GG--TGG-TGCATGGTGATGCAGCGGTGGAGGATGCTTTGGATAAGCATGAAGAGGGTAT 527 Query 635 GGCGGTTTTAATGGTGGAAGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATCGTGGA 694 |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 528 GGCGGTTTTACTGGCGGAGGCTGATAAACTGAGGTTTGAGACGCTTAGGAAGATTGTGGA 587 Query 695 TGTTGTTACGCCGGTTCAAGCGGCGGAGTTTTTGCTCGCAGGGAAAAGATTACACATATC 754 ||| | || |||||||||||||||||||||||||| || ||||||||||||||| | || Sbjct 588 GGTTATGACTCCGGTTCAAGCGGCGGAGTTTTTGCTTGCCGGGAAAAGATTACACTTTTC 647 Query 755 ATTGCACGAGTGGGGAAGAGTTAGAGAAGA 784 |||||||| ||||||||| ||||| ||| Sbjct 648 GTTGCACGACCGGGGAAGAGCTAGAGCAGA 677 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38771006589 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5