BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18700.1
Length=2053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946320 jgi|Araly1|946320|scaffold_702549.1 2392 0.0
Ahg494401 jgi|Araly1|494401|fgenesh2_kg.8__217__AT5G45810.1 1029 0.0
> Ahg946320 jgi|Araly1|946320|scaffold_702549.1
Length=1663
Score = 2392 bits (1295), Expect = 0.0
Identities = 1460/1535 (95%), Gaps = 29/1535 (2%)
Strand=Plus/Plus
Query 258 AACTTTCTTCATCAATGGCGGAGAAAATCACGAGAGAGACGTCGTTACCTAAAGAGAGAA 317
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 7 AACTTTCTTCATCAATGGCGGAGAAAATCACAAGAGAAACGTCTTTACCTAAAGAGAGAA 66
Query 318 GCAGCCCACAAGCTCTAATCCT-GGGACGATACGAAATGGGTAAGCTTCTCGGCCATGGT 376
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 67 GCAGCCCACAAGCTCTAATCCTCGGGA-GATACGAAATGGGTAAGCTTCTCGGCCATGGA 125
Query 377 ACCTTCGCTAAAGTTTACCTCGCACGTAACGTGAAAACA-AACGAAAGCGTAGCAATCAA 435
|| |||||||| ||||| |||||||||||||||||| || | |||||||||||||||||
Sbjct 126 ACTTTCGCTAAGGTTTATCTCGCACGTAACGTGAAATCAGGA-GAAAGCGTAGCAATCAA 184
Query 436 AGTAATCGACAAGGAGAAAGTTCTCAAAGGAGGTTTAATCGCACACATCAAACGCGAGAT 495
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 185 AGTAATCGACAAAGAGAAAGTTCTCAAAGGAGGTTTAATCGCTCACATCAAACGCGAGAT 244
Query 496 CTCGATTCTTCGACGTGTTCGTCACCCAAACATCGTTCAGCTATTCGAAGTCATGGCGAC 555
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 245 CTCGATTCTCCGACGTGTTCGTCATCCAAACATTGTTCAGCTATTCGAAGTCATGGCGAC 304
Query 556 GAAAGCTAAGATCTATTTCGTGATGGAGTATGTTCGTGGAGGTGAGTTATTCAATAAAGT 615
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 305 GAAAGCGAAGATCTATTTCGTGATGGAATATGTTCGTGGAGGTGAGTTGTTCAATAAAGT 364
Query 616 AGCTAAAGGTCGTCTTAAAGAAGAAGTAGCTCGCAAATATTTCCAGCAATTGATCTCTGC 675
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 365 AGCTAAAGGTCGTCTTAAAGAAGAAGTAGCTCGGAAATATTTCCAGCAATTGATCTCTGC 424
Query 676 TGTTACTTTCTGTCACGCGAGAGGTGTTTATCATAGAGATCTGAAACCTGAGAATCTTTT 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TGTTACTTTCTGTCACGCGAGAGGTGTTTATCATAGAGATCTGAAACCTGAGAATCTTTT 484
Query 736 G-TTAGATGAGAATGGTAATCTTAAAGTCTCTGACTTTGGACTTAGTGCTGTCTCTGATC 794
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GCTT-GATGAGAATGGTAATCTTAAAGTCTCTGACTTTGGACTTAGTGCTGTCTCTGATC 543
Query 795 AGATTCGTCAAGATGGGCTTTTTCATACGTTTTGTGGTACTCCTGCTTATGTTGCTCCTG 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AGATTCGTCAAGATGGGCTTTTTCATACGTTTTGTGGTACTCCTGCTTATGTTGCTCCTG 603
Query 855 AGGTTTTAGCTAGGAAAGGTTATGATGCTGCTAAAGTTGATATTTGGTCTTGTGGTGTTA 914
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 AGGTTTTAGCGAGGAAAGGTTATGATGCTGCTAAAGTTGATATTTGGTCTTGTGGTGTTA 663
Query 915 TCTTGTTTGTGTTGATGGCTGGTTATTTGCCGTTTCATGATCGGAATGTTATGGCTATGT 974
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 664 TCTTGTTTGTGTTGATGGCTGGTTATTTGCCTTTTCATGATCGGAATGTTATGGCTATGT 723
Query 975 ATAAGAAGATTTACAGAGGGGAGTTTAGGTGTCCTAGGTGGTTTTCTACTGAGCTTACCA 1034
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 724 ATAAGAAGATTTACAGAGGGGAGTTTAGGTGTCCTAGGTGGTTTTCTGCTGAGCTTACGA 783
Query 1035 GGTTGTTGTCGAAGCTTTTGGAGACGAATCCGGAGAAACGGTTCACTTTCCCTGAGATTA 1094
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 784 GGTTGTTGTCGAAGCTTTTGGAGACGAATCCGGAGAAACGGTTTACTTTCCCTGAGATTA 843
Query 1095 TGGAGAATTCTTGGTTTAAGAAAGGGTTTAAGCATATTAAGTTTTATGTGGAGGATGATA 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TGGAGAATTCTTGGTTTAAGAAAGGGTTTAAGCATATTAAGTTTTATGTGGAGGATGATA 903
Query 1155 AGTTGTGTAATGTTGTTGATGATGATGAACTGGAGTCTGACTCGGTGGAGTCGGATAGAG 1214
|||| |||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 904 AGTTATGTAATGTTGTTGATGATGATGAATTGGAGTCTGA--------A-TCGGATAGAG 954
Query 1215 ATTCCGCGGCTTCTGAGTCGGAGATTGAGTATTTGGAGCCTAGGAGGAGAGTTGGAGGGT 1274
||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 955 ATTCCGCGGTTTCTGAATCGGAGATTGAGTATTTGGAGCCTAGAAGGAGAGTTGGGGGGT 1014
Query 1275 TGCCTAGACCTGCGAGTTTGAATGCTTTCGATATTATATCGTTTTCGCAAGGTTTTGATT 1334
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1015 TGCCTAGACCTGCGAGTTTGAATGCTTTCGATATCATATCGTTTTCGCAAGGGTTTGATT 1074
Query 1335 TATCGGGTTTGTTTGATGACGATGGGGAGGGTTCTAGGTTTGTTTCGGGAGCTCCGGTTT 1394
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TATCGGGGTTGTTTGATGACGATGGGGAGGGTTCTAGGTTTGTTTCGGGAGCTCCGGTTT 1134
Query 1395 CGAAGATTATATCGAAGTTGGAAGAGATTGCTAAAGTTGTGAGCTTTACTGTGAGGAAGA 1454
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1135 CGAAGATTATATCGAAGTTGGAAGAGATTGCTAAAGTTGTGAGCTTTACGGTGAGGAAGA 1194
Query 1455 AGGATTGTAGGGTAAGTCTTGAAGGTTCAAGACAAGGAGTGAAAGGTCCATTGACGATTG 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 AGGATTGTAGGGTAAGTCTTGAAGGTTCAAGACAAGGAGTGAAAGGTCCATTGACGATTG 1254
Query 1515 CAGCAGAGATATTCGAATTGACACCATCGTTGGTTGTTGTGGAAGTCAAGAAGAAAGGAG 1574
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CAGCAGAGATATTCGAGTTGACACCATCGTTGGTTGTTGTGGAAGTCAAGAAGAAAGGAG 1314
Query 1575 GAGATAAAACAGAGTATGAAGA-TTTCTGTAACAATGAATTGAAACCCAAGTTGCAAAAC 1633
|||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 1315 GAGATAAAACAGAGTATGAAGAGTTT-TGTAACAACGAATTGAAACCCAAGTTGCAAAAT 1373
Query 1634 TTGACAGCTGATGATGTAGTAGCTGAGCCTGTCGCGGTTTCAGCGGTTGATGAAAC---- 1689
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1374 TTGACAGCTGATGATGTAGTAGCTGAGCCTGTAACGGTTTCTGCGGTTGATGAAACTGAA 1433
Query 1690 -C-GCTATCCCGAATTCTCCAACCATT-TCTTTCTTGCCGTCTGACACTGAATAGAAGGA 1746
| || ||| || |||||||| || | | ||||||||| |||||||||||||||||| |
Sbjct 1434 ACCGCGATCGCGGATTCTCCA-CCGGTATGTTTCTTGCCTTCTGACACTGAATAGAAG-A 1491
Query 1747 CTTGATGGAAGACCACAAAGCCAGAGATCATGAGG 1781
||||| |||||||||||||||||||||||||||
Sbjct 1492 CTTGA---AAGACCACAAAGCCAGAGATCATGAGG 1523
Score = 233 bits (126), Expect = 3e-60
Identities = 130/132 (98%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 1908 GTTAGAGAAATTGAGTTATGTTTTTTACTAACCTTTTAGCAGtttttttttGTAATGGGA 1967
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1530 GTTAGAGAAATTGAGTTATGTTTTCTACTAACCTTTTAGCAGTTTTTTTTTGTAATGGGA 1589
Query 1968 GAATTGTAAACAGTTTCGCATAATCAGATCTTTGATATGTATAAAAACAATGAAATAAAT 2027
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 GAATTGTAAACAGTTTCACATAATCAGATCTTTGATATGTATAAAAACAATGAAATAAAT 1649
Query 2028 AAAAGAAAGTTC 2039
||||||||||||
Sbjct 1650 AAAAGAAAGTTC 1661
> Ahg494401 jgi|Araly1|494401|fgenesh2_kg.8__217__AT5G45810.1
Length=1452
Score = 1029 bits (557), Expect = 0.0
Identities = 1097/1350 (81%), Gaps = 67/1350 (5%)
Strand=Plus/Plus
Query 325 ACAAGCTCTAATCC-TGGGACGATACGAAATGGGTAAGCTTCTCGGCCATGGTACCTTCG 383
||||||||| |||| ||| | ||| |||||||||| |||||| |||||||| ||||| |
Sbjct 60 ACAAGCTCTGATCCTTGGCA-AATATGAAATGGGTAGGCTTCTTGGCCATGGAACCTTTG 118
Query 384 CTAAAGTTTACCTCGCACGTAACG-TGAAAAC-AAACGAAAGCGTAGCAATCAAAGTAAT 441
|||||||||| |||||| | |||| | || | | ||||||||||| ||||| |||||
Sbjct 119 CTAAAGTTTATCTCGCAAGAAACGCT-CAATCTGGA-GAAAGCGTAGCCATCAAGGTAAT 176
Query 442 CGACAAGGAGAAAGTTCTCAAAGGAGGTTTAATCGCACACATCAAACGCGAGATCTCGAT 501
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 177 AGACAAAGAGAAAGTTCTCAAATCTGGTTTAATCGCACACATCAAACGCGAGATCTCGAT 236
Query 502 TCTT-CGACGTGTTCGTCACCCAAACATCGTTCAGCTATTCGAAGTCATGGCGACGAAAG 560
||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 237 -CTTGCGTCGTGTTCGTCATCCAAACATCGTTCAGCTATTCGAAGTCATGGCTACGAA-G 294
Query 561 -CTAAGATCTATTTCGTGATGGAGTATGTTCGTGGAGGTGAGTTATTCAATAAAGTAGCT 619
| |||||||||||||| ||||| |||||| |||||||| || ||||| || ||||||
Sbjct 295 TCCAAGATCTATTTCGTAATGGAATATGTTAAAGGAGGTGAATTGTTCAACAAGGTAGCT 354
Query 620 AAAGGTCGTCTTAAA-GAAGAAGTAGCTCGCAAATATTTCCAGCAATTGATCTCTGCTGT 678
||||| | ||||| |||||| | || || | |||||| || ||||||||||| || ||
Sbjct 355 AAAGGAAGG-TTAAAAGAAGAAATGGCACGTAGATATTTTCAACAATTGATCTCCGCCGT 413
Query 679 -TACTTTCTGTCACG-CGAGAGGTGTTTATCATAGAGATCTGAAACCTGAGAATCTT-TT 735
| ||| |||||| | | |||||||||||| ||||| ||||||| ||||||||| ||
Sbjct 414 ATGGTTT-TGTCACTTCC-GTGGTGTTTATCATCGAGATTTGAAACCGGAGAATCTTCTT 471
Query 736 GTTAGATGAGAATGGTAATCTTAAAGTCTCTGACTTTGGACTTAGTGCTGTCTCTGATCA 795
||||| || ||||| || || ||||||||||| ||||| ||||||||||| ||||||||
Sbjct 472 -TTAGACGAAAATGGAAACCTAAAAGTCTCTGATTTTGGTCTTAGTGCTGTTTCTGATCA 530
Query 796 GATTCGTCAAGATGGGCTT-TTTCATACGTTTTGTGGTACTCCTGCTTATGTTGCTCCTG 854
|||||| ||||||||| || |||||||| |||||||| || |||||||| || || || |
Sbjct 531 GATTCGACAAGATGGG-TTATTTCATACTTTTTGTGGGACCCCTGCTTACGTGGCACCGG 589
Query 855 AGGTT-TTAGCTAGGAAAGGTTATGATGCTGCTAAAGTTGATATTTGGTCTTGTGGTGTT 913
||||| || ||| ||||||| || || | |||||||||||||||||||||||||| ||
Sbjct 590 AGGTTCTT-GCTCGGAAAGGCTACGACGGAGCTAAAGTTGATATTTGGTCTTGTGGAGTG 648
Query 914 ATCTTGTTTGTGTTGATGGCTGGTTATT-TGCCGTTTCATGATCGGAATGTTATGGCTAT 972
|||||||| ||||| ||||| || | || | || |||||||| |||||||||||||||||
Sbjct 649 ATCTTGTTCGTGTTAATGGCGGGGT-TTCTACCTTTTCATGACCGGAATGTTATGGCTAT 707
Query 973 GTATAAGAAGATTTACAGAGGGGAGTTTAGGTGTCCTAGGTGGTTTTCTACTGAGCTTA- 1031
||||||||||||||| | ||| || ||||||||||| || |||||| | |||| |||
Sbjct 708 GTATAAGAAGATTTATAAAGGAGATTTTAGGTGTCCGAGATGGTTTCCGGTTGAGATTAA 767
Query 1032 CCAGGTTGTTG-T-CGAAGCTTTTGGAGACGAATCCGGAGAA-ACGGTTCACTTTCCCTG 1088
|| |||||||| | |||| | |||||||| || ||||| || |||||| || | || |
Sbjct 768 CC-GGTTGTTGATTCGAA--TGTTGGAGACTAAACCGGA-AAGACGGTTTACAATGCCGG 823
Query 1089 AGATTATGGAGAATTCTTGGTTTAAGAAAGGGTTTAAGCATATTAAGTTTTATGTGGAGG 1148
|||||||||||| | |||||| |||||||| ||||||||||||||||||||||| || |
Sbjct 824 AGATTATGGAGACTAGTTGGTTCAAGAAAGGTTTTAAGCATATTAAGTTTTATGTTGAAG 883
Query 1149 ATGAT-A--AG-TTGTGTAATGTTGTTGATGATGATGA-ACTGGAGTC--T-GACTCGGT 1200
||||| | || || ||||||||||||||||||||||| | | || || | || |||||
Sbjct 884 ATGATCATCAGCTT-TGTAATGTTGTTGATGATGATGAGA-TCGAATCGATTGAATCGGT 941
Query 1201 GGAGTCGGATAGAGA-TTCCGCGGCTTCTGAGTCGGA-GA-TT-GAGTATTTGGAGCCTA 1256
|||| || | ||| ||| |||||| |||| || || |||| ||| || |
Sbjct 942 T---TCGGGGAG-GTCTTCTACGGTTTCTGAACCGGATGACTTAGAGTCTTTTGA---TG 994
Query 1257 GGAGGAGA-GTTGGAGGGTT-G---CCTAGACCTGCGAGTTTGAATGCTTTCGATATTAT 1311
|||||||| | || | || | |||||||| ||||||||||||||||||||| | ||
Sbjct 995 GGAGGAGAAG--GGCGTTTTCGATGCCTAGACCCGCGAGTTTGAATGCTTTCGATCTCAT 1052
Query 1312 ATCGTTTTCGCAAGGTTTTGAT-TTATCGGGTTTGTTTGATGACGATGGGGAGGGTTCTA 1370
|||||||||| ||||||||| || |||||||||||||| || ||| | || || ||||
Sbjct 1053 TTCGTTTTCGCCTGGTTTTGATCTT-TCGGGTTTGTTTGAGGATGATCGTGAAGGCTCTA 1111
Query 1371 GGTTTGTTTCGGGAGCTCCGGTTTCGAAGATTATATCGAAGTTGGAAGAGATTGCTAAAG 1430
||||||| || || ||||| ||| | |||| ||||| || ||||| || || || |||
Sbjct 1112 GGTTTGTGTCTGGTGCTCCTGTTGCTCAGATCATATCTAAATTGGAGGAAATCGCGAAAA 1171
Query 1431 TTGTGAGCTTTACTGTGAGGAAGAAGGATTGTAGGGTAAGTCTTGAAGGTTCAAGACAAG 1490
| ||||| ||||| ||| | ||||||||||||| || |||||||||||||||||| |||
Sbjct 1172 TCGTGAGTTTTACGGTGCGAAAGAAGGATTGTAAAGTGAGTCTTGAAGGTTCAAGAGAAG 1231
Query 1491 GA-GT--GAAAGGTCCATTGACGATTGCAGCAGAGATATTCGAATTGACACCATCGTTGG 1547
|| || ||||||||||||| | ||||| || |||||||| |||||||| ||| | ||||
Sbjct 1232 GAAGTAAGAAAGGTCCATTGTCAATTGCTGCTGAGATATTTGAATTGACTCCAGCTTTGG 1291
Query 1548 TTGTTGTGGAAGTCAAGAAGAAAGGAGGAGATAAAACAGAGTATGAAGA-TTTCTGTAAC 1606
||||||| ||||| |||||||||||||| ||||||| |||||||| || ||| |||||
Sbjct 1292 TTGTTGTTGAAGTTAAGAAGAAAGGAGGTGATAAAATGGAGTATGATGAGTTT-TGTAAT 1350
Query 1607 AATGAATTGAAACCCAAGTTGCAAAACTTG 1636
|| ||||||||||| || ||||| || |||
Sbjct 1351 AAAGAATTGAAACCGAAATTGCAGAATTTG 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208926615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5