BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18740.1
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492985 jgi|Araly1|492985|fgenesh2_kg.7__2418__AT4G18740.1 942 0.0
> Ahg492985 jgi|Araly1|492985|fgenesh2_kg.7__2418__AT4G18740.1
Length=756
Score = 942 bits (510), Expect = 0.0
Identities = 695/780 (89%), Gaps = 30/780 (4%)
Strand=Plus/Plus
Query 20 GTGAAGAAAGAGGCCAAAGTGAGAACTGTCGGAAGACAATCTCTGATTTTCAGGGAAAGT 79
|||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 1 GTGAGGAAAGAGGCCAAAGTGAGAATTGTTGGAAGACTATCTCTGATTTTCAGGGAAAGG 60
Query 80 CAGGAATTAAAGCTATGGACTTGGCTCTTCATTGTCATTGTGCTTACCCGTTGATCAAAC 139
||||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 61 CAGGACTTTTGGCTATGGACTTGGCTCTTCATTGTCCTTGTGCTTACCCGTTGATCAGAC 120
Query 140 TAGGATTCATG-AGAGCTAAATCAGCCAATCATCTTCATGTTCGAGATACTCATTCACTG 198
|||||||| | ||| |||||||||| |||||||||| |||||||||||| | |||||||
Sbjct 121 AAGGATTCA-GAAGAACTAAATCAGCTAATCATCTTCTTGTTCGAGATACACCTTCACTG 179
Query 199 CCGTTTGCGTTGCGCTTTGAGCAGAGTCTTTCGAGAACAACGATTAATGGAGATAGAAGT 258
| |||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 180 CTGTTTGCGTTGCGGTTTGAGCAGAGTCTTTCAAGAACAACAATTAATGGCGATAGAAGA 239
Query 259 ATTTGGTTTCAAGAGAAAGGTGGTTCTTCTTATACTTCAATGGGAAGATCCAAGAAAGGA 318
||||||||||||||||||||||||||||||| |||||||||||| |||||||| || |||
Sbjct 240 ATTTGGTTTCAAGAGAAAGGTGGTTCTTCTTTTACTTCAATGGGGAGATCCAACAAGGGA 299
Query 319 TGTGTTTGTTGCAAGAAACCGTCTGATAGACGAACGTCAAACCCAAGTAAATCGAACCAA 378
| |||||||||| || | | | |||||||||||| |||||||| ||||||
Sbjct 300 TATGTTTGTTGC----AA------G--A-A--AACGTCAAACCCGAGTAAATCAAACCAA 344
Query 379 GAGGAGATCATTTCGCTCTTGAAACGGATTCAATCTTCGATCTCTAAAGGAGAGTCTC-G 437
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 345 GAGGAGATCATTTCTCTCTTGAGACGGATTCAATCTTCGATCTCTAAAGGAGAGTCTCGG 404
Query 438 AGGAGTCGAGGAAGAGAAGAACAGCGATGAGTCTTCTAAGGAAAAGCCGCTGACCAAAGC 497
||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GGGA-TTGAGGAAAAGAAGAACAGCGATGAGTCTTCTAAGGAAAAGCCGCTGACCAAAGC 463
Query 498 TATTCTTGACGTTCTTGAGAAATCAAGaaaaaaaaCTGAGGGAGATACTAGTGTGAAGGA 557
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 464 TATTTTTGACGTTCTTGAGAAATCAAGAAAAAAAACTGAGGGAGATACTAGTGTGAAGAA 523
Query 558 GAAGCCACCAAAGAGACAAGTAGAGCTTCCTCGACCACCGTCTAGTTTTGTCAAGAG-AA 616
||||||||||||| ||| ||||||| || ||| ||||||||||| ||| | ||| || ||
Sbjct 524 GAAGCCACCAAAGGGACCAGTAGAGGTTTCTCAACCACCGTCTAATTTCG-CAA-AGGAA 581
Query 617 -CTCCTTTATCTTCTTCTGCCTCAGGTCCAAGAGGTAAGCTCCCAGTATCAAACAGCGAT 675
||||| || | ||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 582 ACTCCTATA-C--CTTCTGCCTCAGGTCCAAGTGGTAAGCTTCCAGTATCAAACAGCAAT 638
Query 676 AAAGCTTTAGGA-AAATTGA-CAAAGAAGGAAGAGAAAGCTTCACTGATAGAAACTATGA 733
||||||||||| |||| || | |||||||||||||||||| |||||||||||||||
Sbjct 639 AAAGCTTTAGGGGAAAT-GAACGTT-AAGGAAGAGAAAGCTTCATTGATAGAAACTATGA 696
Query 734 AACTTGCAGAGCTCAAAGAAGTTGCAAAGAACAGAGGAATCAAAGGATACTCAAAGTTGA 793
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 697 AACTTGCAGAGCTCAAAGAAGTTGCAAAGAATAGAGGAATAAAAGGATACTCAAAGTTGA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34005641964
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5