BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18810.2
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492978 jgi|Araly1|492978|fgenesh2_kg.7__2411__AT4G18810.1 2964 0.0
Ahg899762 jgi|Araly1|899762|Al_scaffold_0004_412 207 2e-52
> Ahg492978 jgi|Araly1|492978|fgenesh2_kg.7__2411__AT4G18810.1
Length=1977
Score = 2964 bits (1605), Expect = 0.0
Identities = 1734/1798 (96%), Gaps = 2/1798 (0%)
Strand=Plus/Plus
Query 70 TTGAATTCAGAAATGGAGGTTTCGTCTTCACTCAAGCTCTCATCGTCGTTATCTCCTTCC 129
||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 TTGAATTGAGGCATGGAGGTTTCATCTTCACTCAAGCTCTCATCATCGTTATCTCCTTCC 60
Query 130 ATCATCAAACTTCAGGGTTCTTCATCAAGTATTGATATAAAATTCTCTAAGTACACTTCA 189
|| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 ATTATCAACCTTCAGGGTTCTTCATCAAGTATTGATGTAAAATTCTCTAAGTACACTTCA 120
Query 190 CTTCCTAAACCGTTTCTTCAACTTGATGATAAAAGCCGACGTCTTCGTGACCAACAAGTT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTCCTAAACCGTTTCTTCAACTTGATGATAAAAGCCGACGTCTTCGTGACCAACAAGTT 180
Query 250 TCACATTCTCTCGAGCTAAGGTCTTACAGAAAACGGGTCACTGCGAAATCAGGTTCTCAA 309
|||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCACATTCTCTCAATCTAAGGTCATACAGAAAACGGGTCACTGCGAAATCAGGCTCTCAA 240
Query 310 GGTTGGGACTTTGGTAGATTCGTCAAAACATTGTACTTTTTCAATGGACCACCATCTCC- 368
||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||
Sbjct 241 GGTTGGGACTTTGGTAGATTCATCAAAACATTGTACTTTTTCAACGGAGCACCATCTCCG 300
Query 369 TCTAAAGTTTGTTTCATCGGTGTTTGAGAAACTTACTAACGGAGCAACGGAGGAACCGGT 428
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 T-TAAAGTTTGTTTCATCGGTGTTTGAGAAACTTACTAACGGATCAACGGAGGAACCGGT 359
Query 429 TGCTGAAATGGGAACTTCTGGAATCATACTTGTGGCTGGAGCTACTGGTGGTGTAGGAAG 488
| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TACTGAAATGGAAACTACTGGAATCATACTTGTGGCTGGAGCTACTGGTGGTGTAGGAAG 419
Query 489 AAGGATTGTTGATATCTTGAGGAAAAGAGGGTTGCCTGTTAAAGCATTGGTTAGAAATGA 548
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 AAGGGTTGTTGATATCTTGAGGAAGAGAGGGTTGCCTGTTAAAGCATTGGTTAGAAATGA 479
Query 549 AGAGAAGGCTCGGAAGATGTTAGGACCTGAGATTGACTTGATTGTTGCAGATATTACAAA 608
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 480 AGAGAAGGCTCGGAAGATGTTAGGACCTGACATTGACTTGATTGTTGCAGATATTACGAA 539
Query 609 GGAGAATACATTGGTTCCTGAAAAGTTCAAAGGAGTGAGGAAAGTGATCAATGCTGTTTC 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGAGAATACATTGGTTCCTGAAAAGTTCAAAGGAGTGAGGAAAGTGATCAATGCTGTTTC 599
Query 669 TGTTATTGTTGGTCCAAAGGAAGGAGATACACCTGAGAGACAAAAATATAATCAGGGAGT 728
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 TGTTATTGTCGGTCCAAAAGAAGGAGATACACCTGAGAGACAAAAATACAATCAGGGAGT 659
Query 729 CAGGTTCTTCGAGCCAGAGATAAAAGGCGACTCTCCCGAGTTAGTGGAATACATTGGAAT 788
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 CAGGTTCTTCGAGCCAGAGATAAAAGGCGACTCTCCCGAGTTAGTGGAATATATTGGAAT 719
Query 789 GAAGAACTTAATCAATGCTGTTAGAGATGGTGTTGGACTTGAGAATGGGAAGCTTATTTT 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 GAAGAACTTAATCAATGCTGTTAGAGATGGTGTTGGACTTGAGAATGGGAAGCTTCTTTT 779
Query 849 TGGTGTCGGGGATAACACGTTTAAGGATCTACCTTGGGGAGCATTGGATGATGTTGTAAT 908
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 780 CGGTGTTGGGGATAACACGTTTAAAGATCTACCTTGGGGAGCCTTGGATGATGTTGTAAT 839
Query 909 GGGAGGTGTCAGCGAAAGTAACTTCATAGTAGATCTAACCGCTGGTGAAAACGGTGGACC 968
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 840 GGGAGGTGTCAGCGAAAGTAACTTCCTAGTAGATCTAACCGCTGGTGAAAACGGTGGACC 899
Query 969 TACCGGAATTTTTAAAGGAATTGTTTCCACAACAAATAATGGCGGATTTACGAGTGTCCG 1028
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 900 TACCGGAATTTTCAAAGGAATTGTTTCAACAACAAATAATGGCGGATTTACAAGTGTCCG 959
Query 1029 AACCAAGAACTTTCCCGAGGCGGAGAATGTCTCTGCATATGATGGTCTAGAGCTAAGACT 1088
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 AACCAAGAACTTTCCCGAAGCGGAGAATGTCTCTGCATATGATGGCCTAGAGCTAAGACT 1019
Query 1089 AAAAGGTGATGGACTCCGTTATAAGCTAATCGTCCGAACAAGCCAAGATTGGGATACTGT 1148
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1020 AAAAGGTGATGGACTCCGTTACAAGCTAATCGTCCGGACAAGCCAGGATTGGGATACTGT 1079
Query 1149 TGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCTGTACGCTTACCTTT 1208
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 TGGTTACACCGCTAGTTTTGACACTTCACCTGGCCAATGGCAATCTGTACGCTTACCTTT 1139
Query 1209 CTCGTCTTTAAGACCTGTATTTCGCGCACGTACAGTTACAGATGCACCACCTTTTAATGC 1268
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 1140 CTCGTCTTTAAGACCTGTATTTCGTGCACGTACAGTGACAGATGCACCTCCTTTTAATGC 1199
Query 1269 AAGCAGTATCATTTCACTACAGCTTATGTTTAGCAAATTTGAGTATGATGGTAAGCTTAA 1328
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 AAGCAGTATCATTTCACTACAGCTTATGTTTAGCAAATTTGAGTATGACGGTAAGCTTAA 1259
Query 1329 CCCTACATTCAAAGAAGGACCTTTCGAGCTTCCTTTATCTAGCATTCGAGCTTATATCCA 1388
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1260 CCCGACTTTCAAAGAAGGACCTTTCGAGCTTCCTTTATCAAGCATTCGAGCTTATATCCA 1319
Query 1389 AGACCCCGTCACTCCAAGGTTTGTTCACGTTGGCTCTGCGGGAGTTACTCGACCAGAGAG 1448
||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1320 AGAACCCGTCACTCCAAGGTTTGTTCATGTTGGCTCTGCGGGAGTAACCCGACCAGAGAG 1379
Query 1449 ACCCGGTTTGGATCTAAGCAAACAACCTCCGGCCGTGAGATTAAACAAAGAGCTTGATTT 1508
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1380 ACCCGGTTTGGATCTAAGCAAACAACCTCCGGCTGTGAGATTAAACAAAGAGCTTGATTT 1439
Query 1509 CATTCTCACTTACAAGTTAAAGGGAGAGGATCTGATACGCGACAGCGGGATTCCATTTGC 1568
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1440 CATTCTCACTTACAAGTTAAAGGGAGAGGATCTGATACGCGAAAGCGGGATTCCATTTGC 1499
Query 1569 AATTGTACGGCCATGTGCTTTAACAGAAGAGCCTGCCGGAGCTGATCTCATTTTCGAACA 1628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GATTGTACGGCCATGTGCTTTAACAGAAGAGCCTGCCGGAGCTGATCTCATTTTCGAACA 1559
Query 1629 AGGAGACAACATTACGGGGAAGGTATCAAGAGACGAAGTAGCGCGTATATGCATCGCTGC 1688
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 AGGAGACAATATTACGGGGAAGGTATCAAGAGACGAAGTAGCGCGTATATGCATCGCTGC 1619
Query 1689 TTTAGAAAGCCCGTATGCTCTTAACAAGACCTTCGAGGTTAAAAGTACGGTTCCGTTTAG 1748
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1620 TTTAGAAAGCCCGTATGCTCTAAACAAGACATTCGAGGTTAAAAGTACGGTTCCGTTTAG 1679
Query 1749 CGAGCCTTTCACGGTAGATCCTGAGAATCCTCCACCGGAGAAAGACTACAATGAGTATTT 1808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TGAGCCTTTCACGGTAGATCCTGAGAATCCTCCACCGGAGAAAGACTACAATGAGTATTT 1739
Query 1809 CAAGACTCTGAAAGATGGAATCACCGGTAAAGAAGCTTTAGAACAGAGCACTGTTGCA 1866
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 CAAGAATCTGAAAGATGGAATCACCGGTAAAGAAGCTTTAGAACAGAGCACTGTTGCA 1797
> Ahg899762 jgi|Araly1|899762|Al_scaffold_0004_412
Length=573
Score = 207 bits (112), Expect = 2e-52
Identities = 123/128 (96%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 1739 TTCCGTTTAGCGAGCCTTTCACGGTAGATCCTGAGAATCCTCCACCGGAGAAAGACTACA 1798
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 62 TTCCGTTTAGTGAGCCTTTCACGGTAGATCCTGAGAATCCTCCACCGGAGCAAGACTACA 121
Query 1799 ATGAGTATTTCAAGACTCTGAAAGATGGAATCACCGGTAAAGAAGCTTTAGAACAGAGCA 1858
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 122 ATGAGTATTTCAAGAATCTGAAAGATGGAATCACCGGTAAAGAAGCTTTTGAACAGAGCA 181
Query 1859 CTGTTGCA 1866
|||| |||
Sbjct 182 CTGT-GCA 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77932641270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5