BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18960.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946287 jgi|Araly1|946287|scaffold_702516.1 1515 0.0
> Ahg946287 jgi|Araly1|946287|scaffold_702516.1
Length=950
Score = 1515 bits (820), Expect = 0.0
Identities = 856/874 (98%), Gaps = 0/874 (0%)
Strand=Plus/Plus
Query 392 GCACAACCTTACCTTCCATTTTCTGCAACTTCTCCAAATCTCATACTTTCCAGAAAATCA 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 GCACAACCTTACCTTCCATTTTCTGCAACTTCTCCAAATCTCATACTTTCCAGAAAATCA 116
Query 452 TTTTCCCAAGAAAAATAAAACTTTCCCCTTTGTTCTTCTCCCCCCAACAGCAATCACGGC 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TTTTCCCAAGAAAAATAAAACTTTCCCCTTTGTTCTTCTCCCCCCAACAGCAATCACGGC 176
Query 512 GTACCAATCGGAGCTAGGAGGAGATTCCTCTCCCTTGAGGAAATCTGGGAGAGGAAAGAT 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GTACCAATCGGAGCTAGGAGGAGATTCCTCTCCCTTGAGGAAATCTGGGAGAGGAAAGAT 236
Query 572 CGAAATCAAACGGATCGAGAACACAACGAATCGTCAAGTCACTTTTTGCAAACGTAGAAA 631
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 237 CGAAATCAAACGGATCGAGAACACAACGAATCGTCAAGTTACTTTTTGCAAACGTAGAAA 296
Query 632 TGGTTTGCTCAAGAAAGCTTACGAGCTCTCTGTTCTTTGTGATGCTGAAGTCGCACTCAT 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGGTTTGCTCAAGAAAGCTTACGAGCTCTCTGTTCTTTGTGATGCTGAAGTCGCACTCAT 356
Query 692 CGTCTTCTCTAGCCGTGGTCGTCTCTATGAGTACTCTAACAACAGTGTAAAAGGGACTAT 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 357 CGTCTTCTCTAGCCGTGGTCGTCTCTATGAGTACTCTAACAACAGTGTAAAAGGGACAAT 416
Query 752 TGAGAGGTACAAGAAGGCAATATCGGACAATTCTAACACCGGATCGGTGGCAGAAATTAA 811
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 417 TGAGAGGTACAAGAAGGCAATCTCAGATAATTCTAACACCGGATCGGTGGCAGAAATTAA 476
Query 812 TGCACAGTATTATCAACAAGAATCAGCCAAATTGCGTCAACAAATAATCAGCATACAAAA 871
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 477 TGCACAGTATTATCAACAAGAATCGGCCAAATTGCGTCAACAAATTATCAGCATACAAAA 536
Query 872 CTCCAACAGGCAATTGATGGGTGAGACGATAGGGTCAATGTCTCCCAAAGAGCTCAGGAA 931
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTCCAACAGGCAATTGATGGGTGAGACGATAGGGTCAATGTCTCCCAAAGAGCTCAGGAA 596
Query 932 CTTGGAAGGCAGATTAGAGAGAAGTATTACCCGAATCCGATCCAAGAAGAATGAGCTCTT 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 597 TTTGGAAGGCAGATTAGAGAGAAGTATTACCCGAATCCGATCCAAGAAGAATGAGCTCAT 656
Query 992 ATTTTCTGAAATCGACTACATGCAGAAAAGAGAAGTTGATTTGCATAACGATAACCAGAT 1051
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 657 ATTTTCAGAAATCGACTACATGCAGAAAAGAGAAGTTGATTTGCATAACGATAACCAGCT 716
Query 1052 TCTTCGTGCAAAGATAGCTGAAAATGAGAGGAACAATCCGAGTATAAGTCTAATGCCAGG 1111
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 717 TCTTCGTGCAAAGATAGCTGAAAATGAGAGGAACAATCCGAGTATAAGTCTGATGCCAGG 776
Query 1112 AGGATCTAACTACGAGCAGCTTATGCCACCACCTCAAACGCAATCTCAACCGTTTGATTC 1171
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 777 AGGATCTAACTACGAGCAGATTATGCCACCGCCTCAAACGCAATCTCAACCGTTTGATTC 836
Query 1172 ACGGAATTATTTCCAAGTCGCGGCATTGCAACCTAACAATCACCATTACTCATCCGCGGG 1231
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 837 ACGGAATTATTTCCAAGTCGCGGCATTGCAACCTAACAACCACCATTACTCATCCGCGGG 896
Query 1232 TCGCCAAGACCAAACCGCTCTCCAGTTAGTGTAA 1265
||||||||||||||| ||||| ||||||||||||
Sbjct 897 TCGCCAAGACCAAACTGCTCTTCAGTTAGTGTAA 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5