BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19120.1
Length=2404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946262 jgi|Araly1|946262|scaffold_702491.1 2961 0.0
Ahg473372 jgi|Araly1|473372|fgenesh2_kg.1__3326__AT1G31850.1 837 0.0
> Ahg946262 jgi|Araly1|946262|scaffold_702491.1
Length=1847
Score = 2961 bits (1603), Expect = 0.0
Identities = 1767/1847 (96%), Gaps = 7/1847 (0%)
Strand=Plus/Plus
Query 212 AAAAGGAGTT-TGTTAAAACAATGAAGTATAAAGATGAGAAGTACGAGAAAGCTGAGAAG 270
||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 AAAAGGA-TTCTGTTGAAACAATGAAGTATAAAGATGAGAAGTACGAGAAAGCTGAGAAA 63
Query 271 GGTTCAAGGATTTTGCCCAAGA-CAGTTTTACTGATTCTTCTTTGTGGACTTTCGTTCTA 329
||||||||| |||| ||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 64 GGTTCAAGGGTTTTACCCAAGACCA-TCTTACTGATTCTTCTTTGTGGACTTTCGTTCTA 122
Query 330 TCTTGGAGGGTTGTATTGTGGGAAGAACATAATTGAAGTTAGTGATGTTGCAAAAGCTGA 389
||||| ||||| |||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 123 CCTTGGTGGGTTATATTGTGGGAAGAACAAAATCGAAGTTAATGATGTTGCAAAAGCTGA 182
Query 390 ATCTTCTTCCTTAGATGTTGATGACTCTCTTCAAGTCAAATCTGTTTCTTTCTCGGAATG 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ATCTTCTTCCTTAGATGTTGATGACTCTCTTCAAGTCAAATCTGTTTCTTTCTCGGAATG 242
Query 450 TAGCAGTGACTACCAAGATTACACTCCTTGCACTGATCCAAGGAAATGGAAGAAGTATGG 509
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 243 TAGCAGTGACTACCAGGATTACACTCCGTGCACTGATCCAAGGAAATGGAAAAAGTATGG 302
Query 510 TACTCACAGGCTTACTTTCATGGAGCGACATTGTCCTCCTGTGTTTGATAGAAAGCAGTG 569
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 303 TACTCACAGGCTTACTTTCATGGAAAGACATTGTCCTCCTGTGTTTGATAGAAAGCAGTG 362
Query 570 TCTGGTTCCTCCTCCTGATGGCTATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGA 629
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 363 TCTGGTTCCTCCTCCTAATGGGTATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGA 422
Query 630 ATGTTGGTACAGGAATGTGCCATATGATTGGATTAACAAGCAGAAATCTAACCAGAATTG 689
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 423 ATGTTGGTACAGGAATGTGCCATATGATTGGATTAACAAGCAAAAATCTAACCAGAACTG 482
Query 690 GCTAAGGAAAGAGGGTGAAAAGTTCATTTTTCCTGGTGGGGGTACAATGTTTCCACATGG 749
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 483 GCTAAGGAAAGAGGGTGAAAAGTTCATTTTTCCTGGTGGAGGTACGATGTTTCCACATGG 542
Query 750 AGTCAGTGCCTATGTCGATCTGATGCAAGATTTGATCCCTGAAATGAAAGATGGGACTAT 809
||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 543 AGTCAGTGCATATGTCGATTTGATGCAAGATCTGATCCCTGAAATGAAAGATGGGACTAT 602
Query 810 ACGCACAGCCATTGACACTGGTTGTGGGGTTGCGAGCTGGGGAGGCGATTTGTTGGACCG 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACGCACAGCCATTGACACTGGTTGTGGGGTTGCGAGCTGGGGAGGCGATTTGTTGGACCG 662
Query 870 GGGTATCCTCACGGTATCACTCGCCCCGAGGGATAATCACGAAGCTCAAGTCCAGTTTGC 929
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 663 CGGTATCCTCACGGTATCACTTGCCCCGAGAGATAATCACGAAGCTCAAGTCCAGTTTGC 722
Query 930 TCTAGAACGTGGAATTCCTGCGATTCTTGGCATCATTTCCACTCAACGTCTCCCTTTCCC 989
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 723 TCTAGAACGTGGAATTCCTGCAATTCTCGGCATCATTTCCACTCAACGTCTCCCTTTCCC 782
Query 990 TTCAAATTCATTTGATATGGCTCATTGCTCAAGATGCCTTATTCCGTGGACAGAATTTGG 1049
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 783 TTCAAACTCATTTGATATGGCTCATTGCTCAAGATGCCTTATTCCGTGGACAGAATTCGG 842
Query 1050 TGGAGTATATCTTCTGGAGGTTCACCGTATCCTAAGACCTGGTGGCTTCTGGGTCTTATC 1109
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 843 TGGAGTATATCTTCTGGAGGTTCACCGTATCCTAAGGCCTGGTGGCTTCTGGGTCTTATC 902
Query 1110 TGGTCCACCAGTCAACTATGAGAACCGTTGGAAAGGTTGGGACACAACCATTGAAGAGCA 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TGGTCCACCAGTCAACTATGAGAACCGTTGGAAAGGTTGGGACACAACCATTGAAGAGCA 962
Query 1170 GAGATCAAACTACGAGAAGCTGCAGGAATTGTTATCTTCAATGTGCTTCAAAATGTATGC 1229
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 963 GAGATCAAACTACGAGAAGCTGCAAGAATTGTTATCTTCAATGTGCTTCAAAATGTATGC 1022
Query 1230 CAAGAAAGACGATATCGCAGTCTGGCAAAAATCTCCAGACAATCTATGCTATAACAAGTT 1289
||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||
Sbjct 1023 CAAGAAAGACGATATCGCAGTGTGGCAGAAATCTTCTGACAATCTATGCTATAACAAGTT 1082
Query 1290 GTCTAACGACCCTGATGCATACCCGCCAAAATGTGACGACAGCCTTGAGCCAGATTCTGC 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GTCTAACGACCCTGATGCATACCCGCCAAAATGTGACGACAGCCTTGAGCCAGATTCTGC 1142
Query 1350 TTGGTATACACCATTACGCCCTTGCGTTGTGGTTCCAAGCCCTAAGCTAAAGAAGACGGA 1409
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 1143 TTGGTATACACCATTACGCCCTTGTGTTGTGGTTCCAAGCCCTAAGCTTAAGAGGACGGA 1202
Query 1410 TTTGGAATCTACTCCCAAGTGGCCAGAAAGATTACACACAACTCCTGAAAGAATCTCTGA 1469
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1203 TTTGGAATCTACTCCCAAGTGGCCAGAGAGATTGCACACAACTCCTGAAAGAATCTCTGA 1262
Query 1470 TGTTCCTGGAGGAAATGGTAACGTGTTTAAACATGATGATAGCAAATGGAAAACAAGGGC 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 TGTTCCTGGAGGAAATGGTAACGTGTTTAAACATGATGATAGCAAATGGAAAACAAGGGC 1322
Query 1530 TAAGCATTACAAGAAGCTGTTACCCGCGATTGGTTCTGACAAAATTCGGAATGTTATGGA 1589
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1323 TAAGCATTACAAGAAGCTGTTACCCGCGATTGGTTCTGACAAGATTCGGAATGTGATGGA 1382
Query 1590 TATGAACACTGCTTATGGAGGTTTGGCTGCTGCTCTGGTCAATGATCCTTTGTGGGTCAT 1649
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1383 TATGAACACTGCTTATGGAGGTTTGGCTGCTGCTCTGGTCGATGATCCTTTGTGGGTTAT 1442
Query 1650 GAATGTCGTCTCTTCTTATGCTGCAAACACACTTCCCGTTGTGTTTGATCGTGGATTGAT 1709
||| || ||||||||||| ||||| || |||||| |||||||||||||||||||||||||
Sbjct 1443 GAACGTTGTCTCTTCTTACGCTGCGAATACACTTTCCGTTGTGTTTGATCGTGGATTGAT 1502
Query 1710 CGGAACATATCATGACTGGTGTGAAGCTTTTTCGACGTATCCAAGAACTTATGATCTTCT 1769
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1503 TGGAACATATCATGACTGGTGTGAAGCTTTTTCGACATATCCAAGAACTTATGATCTTCT 1562
Query 1770 TCACGTAGATGGGCTGTTTACATCTGAAAGCCAGAGGTGTGATATGAAATATGTAATGCT 1829
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1563 TCACGTTGATGGGCTATTTACATCTGAAAGCCAAAGGTGTGATATGAAATATGTAATGCT 1622
Query 1830 GGAAATGGATAGGATCTTACGTCCTAGCGGGTATGCGATTATACGCGAATCGAGCTACTT 1889
|||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 1623 GGAAATGGATAGGATCTTGCGTCCTAACGGGTATGCAATTATACGCGAATCTAGCTACTT 1682
Query 1890 CGCAGATTCAATTGCTTCTGTTGCTAAAGAGCTGAGATGGAGTTGCCGTAAAGAACAAAC 1949
|| |||| | ||||| || ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1683 CGTAGATACGATTGCCTCAGTTGCTAAAGAACTGAGATGGAGTTGCCGTAAGGAACAAAC 1742
Query 1950 AGAGTCTGCATCAGCCAATGAGAAGCTCTTGATTTGCCAGAAGAAGCTGTGGTATTCATC 2009
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 AGAGTCTGAATCAGCTAATGAGAAGCTCTTGATTTGCCAGAAGAAGCTGTGGTATTCATC 1802
Query 2010 TAACGCAAGTTCAgaaacaaattaaataaacaaaaaagaaagaaata 2056
||||||||||||||||||||| |||| || |||||||||| |||||
Sbjct 1803 TAACGCAAGTTCAGAAACAAAATAAA-AAG-AAAAAAGAAA-AAATA 1846
> Ahg473372 jgi|Araly1|473372|fgenesh2_kg.1__3326__AT1G31850.1
Length=2329
Score = 837 bits (453), Expect = 0.0
Identities = 1273/1657 (77%), Gaps = 104/1657 (6%)
Strand=Plus/Plus
Query 413 ACT-CTCTTCAAGTCAAATCTGTTTCTTTCTCGGAATGTAGCAGT--GACTACCAAGATT 469
||| || ||||| ||||||| ||||||||| ||||||| | || || | ||||||||
Sbjct 472 ACTCCTATTCAAATCAAATCCGTTTCTTTCCCGGAATG-CG-GGTCAGAGTTCCAAGATT 529
Query 470 ACACTCCTTGCACTGATCCAAGGAAATGGAAGAAGTATGGTACT-CA-CAGGCTTACTTT 527
|||| || ||||| ||||||| || ||||||||||| ||| | || | | || | |||
Sbjct 530 ACACCCCGTGCACCGATCCAAAGAGGTGGAAGAAGTACGGT-GTCCATC-GCCTAAGTTT 587
Query 528 CATGGAGCGACATTGTCCTCCTGTGTT-TG-ATAGAAAGCAGTGTCTGGTTCCTCCTCCT 585
| ||||||| ||||||||||| || || || | |||| | ||||| | |||| || ||
Sbjct 588 CTTGGAGCGTCATTGTCCTCCGGT-TTATGAAAAGAACG-AGTGTTTAATTCCACCGCCA 645
Query 586 GATGGCTATAAGCCACCGATAAGATGGCCAAAGAGCAAAG-ACGAATGTTGGTACAGGAA 644
||||| ||||| ||||| ||||||||||| |||||| || || | ||||||||||| ||
Sbjct 646 GATGGGTATAAACCACCTATAAGATGGCCTAAGAGCCGAGAAC-AGTGTTGGTACAGAAA 704
Query 645 TGTGCCATATGATTGGATTAACAAGCAGAAATCTAACCAGAATTGGC-TAAGGAAAGAGG 703
||||| ||||||||||| || ||||| |||||||||||| |||||| | | |||||| |
Sbjct 705 CGTGCCTTATGATTGGATCAATAAGCAAAAATCTAACCAGCATTGGCTTCA-GAAAGAAG 763
Query 704 GTGAAAAGTT-CATTTTTCCTGGTGGGGGTACAATGTTTCCACATGGAGTCAGTGC-CTA 761
| || ||||| || ||| |||||||| ||||| |||||||| | |||||| ||| | |||
Sbjct 764 GAGACAAGTTCCA-TTTCCCTGGTGGTGGTACCATGTTTCCTCGTGGAGTTAGT-CACTA 821
Query 762 TGTCGATCTGATGCAAGATTTGA-TCCCTGAAATGAAAGATGGGACTA-TAC-GCACAGC 818
||| ||| ||||||||||| ||| |||| |||||||||||||| || | | | | || ||
Sbjct 822 TGTTGATTTGATGCAAGATCTGATTCCC-GAAATGAAAGATGGAAC-AGT-CAGGACCGC 878
Query 819 CATTGACACTGGTTGTGGGGTTGCGAGCTGGGGAGGCGAT-TTGTTGGACCG-GGGTA-T 875
|||||| || || ||||||||||| ||||||||||||||| || |||||||| ||| | |
Sbjct 879 CATTGATACCGGCTGTGGGGTTGCAAGCTGGGGAGGCGATCTT-TTGGACCGTGGG-ATT 936
Query 876 C-CTCACGGTATCACTCGCCCCGAGGGATAATCACGAAGCTCAAGTCCAGTTTGCTCTAG 934
| |||| | || || || || || ||||| || ||||| || || ||||| ||||| |
Sbjct 937 CTTTCAC--TTTCTCTTGCTCCAAGAGATAACCATGAAGCACAGGTTCAGTTCGCTCTTG 994
Query 935 AACGTGGAATTCCTGCGATTCTTGGCATCATTTCCACTCAACGTCTCCCTTTCCCTTCAA 994
|||||||||||||||||||||| || || || || || |||||||||||||| |||||||
Sbjct 995 AACGTGGAATTCCTGCGATTCTCGGAATTATCTCTACGCAACGTCTCCCTTTTCCTTCAA 1054
Query 995 ATTCATTTGATATGGCTCATTGCTCAAGATGCCTTATTCCGTGGACAGAATTTGGTGGAG 1054
|| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1055 ATGCATTTGATATGGCTCATTGCTCAAGATGTCTTATTCCCTGGACAGAATTTGGTGGAA 1114
Query 1055 TATATCTT-CTGGAGGTTCACCGTATCCTAAGACCTGGTGGCTTCTGGGT-CTTATCTGG 1112
| ||| || || ||| |||||||||| | ||||||| || |||||||| ||| |||||
Sbjct 1115 TCTAT-TTGCTTGAGATTCACCGTATAGTTCGACCTGGGGGTTTCTGGGTTCTT-TCTGG 1172
Query 1113 TCCACCAGTCAACTATGAGA-ACCGTTGGAAAGGTTGGGACACAACCATTGAAGAGCAGA 1171
||||||||| |||||| | | || | ||| || ||| |||||||||| ||||| ||||
Sbjct 1173 TCCACCAGTGAACTATAATAGAC-GATGGCGCGGATGGAACACAACCATGGAAGATCAGA 1231
Query 1172 GATCAAACTACGAGAAGCTGCAGGAA-TTGTTATCTTCAATGTGCTTCAAAATGTATGC- 1229
||| ||||| | ||||| ||| | || ||| | || ||||| ||||||| ||||||
Sbjct 1232 AATCGGACTACAACAAGCTTCAGTCACTT-TTAACCTCCATGTGTTTCAAAAAGTATGCT 1290
Query 1230 CAAGAAAGACGATATCGCAGTCTGGCAAAAA-TCTCCAGACAA-TCTATGCTATAACAAG 1287
||| |||||||| || || || ||||| ||| |||| ||||| ||| ||||| ||||
Sbjct 1291 CAA-AAAGACGACATAGCCGTGTGGCAGAAACTCTCT-GACAAATCT-TGCTACGACAAA 1347
Query 1288 TT-GTCTAACGACCCTG-ATGCATACCCGCCAAAATGTGACGACAGCCTTGAGCCAGATT 1345
| | || || | || | || ||||| || ||||||||||| || | || || ||||
Sbjct 1348 ATCGAA-AA-GAACATGGAAGCTTACCCTCCCAAATGTGACGATAGTATAGAACCTGATT 1405
Query 1346 CTGCTTGGTATACACCATTACG-CCCTTGCGTTGTGGTTCCA-AGC-CCTAA-GCTAAAG 1401
| |||||||| || || | || |||| |||| || | || | | ||||| | | |||
Sbjct 1406 CCGCTTGGTACACTCCCCTCCGGCCCT-GCGTGGTTGC-CCTGA-CTCCTAAAG-TCAAG 1461
Query 1402 AAGA-C-GGATTT-GGAATCTACTCCC-AAGTGGCCAGAAAGATTACACACAACTCCTGA 1457
|| | | || | | || || | |||| || ||||| ||||| ||| | | || ||
Sbjct 1462 AA-ATCCGG-TCTCGGG-TCAA-TCCCGAAATGGCCTGAAAGGTTAAATGTTGCACCCGA 1517
Query 1458 AAGAATCTC-TGATGTTC-CTGGAGGAAATGGTAA-CGTGTTT-AAACATGATGATAGCA 1513
||||| | |||||| | | ||||| | || || || |||| ||||| ||||| | |
Sbjct 1518 GAGAAT-TGGTGATGTGCAC-GGAGGTAGTGC-AAGCG-GTTTGAAACACGATGACGGTA 1573
Query 1514 AATGGAA-AACAAGGGCTAAGCATTACAAGAA-GCTGTTACCCGCGATTGGTTCTGACAA 1571
||||||| |||| | | ||||||||||||||| | | ||||| || |||| | |||||
Sbjct 1574 AATGGAAGAACA-GAGTTAAGCATTACAAGAAAGTT-TTACCAGCTCTTGGGACAGACAA 1631
Query 1572 AATTCGGAATGTTATGGATATGAACACTGCTTATGGAGGTTTGGCTGC-TGCTCTGGTCA 1630
|| | || ||||||||||||||||| | |||||||||||| ||||| | |||| ||
Sbjct 1632 GATAAGAAACGTTATGGATATGAACACGGTTTATGGAGGTTTCGCTGCGT-CTCTCATCG 1690
Query 1631 ATGATCCT-TTGTGGGTCATGAATGTCGTCTCTTCTTAT-GCTGCAAACACACTTCCCGT 1688
||||| || |||||||||||||| ||||| || || || ||||| | ||||| ||
Sbjct 1691 CGGATCCCATT-TGGGTCATGAATGTTGTCTCATCGTACAGC-GCAAATTCGCTTCCTGT 1748
Query 1689 TGTGTTTGATCGTGGAT-TGATCGGAACATATCATGACTGGTGTGAAGCTTTTTCGACGT 1747
||| |||||||| || | | || || || || || |||||||| |||||||| |||||||
Sbjct 1749 TGTCTTTGATCGCGG-TCTCATTGGGACTTACCACGACTGGTGCGAAGCTTTCTCGACGT 1807
Query 1748 ATCCAAGAACTTATGATCTTCTTCACGTAGATGGGCTGTTTACATCT-GAAAGCCAGAGG 1806
|||||||||||||||||||||||||| | || | || ||||| | | || || || |||
Sbjct 1808 ATCCAAGAACTTATGATCTTCTTCACCTCGACAGCCTTTTTACCT-TAGAGAGTCACAGG 1866
Query 1807 TGTGATATGAAATATGTAATGCTGGAAATGGATAGGATCTTACGTCCTAGCGGGTATGCG 1866
||||| ||||| || || |||| || ||||| |||| || || || || || ||||
Sbjct 1867 TGTGAGATGAAGTACGTTTTGCTAGAGATGGACCGGATTTTGCGACCAAGTGGATATGTT 1926
Query 1867 ATTATACGCGAATCGAGCTACTTCGCAGATTCAATTGCTTCTGTTG-CTAAAGAGCTGAG 1925
|| || || |||||||| || ||| || | || | | ||| | |||| | ||||
Sbjct 1927 ATAATCCGAGAATCGAGTTATTTCATGGACGCGATCACAACA-TTGGCGAAAGGGATGAG 1985
Query 1926 ATGGAGTTGCCGTAA-AGAACAAACAGAGT-CTGCA-TCAGCCAAT-GAGAAGCT-CTTG 1980
||||||||||| || ||| | ||||||| | || | | || |||||| | || |
Sbjct 1986 GTGGAGTTGCCG-AAGAGAGGAGACAGAGTAC-GCGGTTAA--AAGCGAGAAGATTCTGG 2041
Query 1981 ATTTGCCAGAAGAAGCTGTGGTATTCATCTAACGCAA 2017
|||||||||||||||| |||| |||||||||| |||
Sbjct 2042 -TTTGCCAGAAGAAGCTATGGTTTTCATCTAAC-CAA 2076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90578602610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5