BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19170.1 Length=2072 Score E Sequences producing significant alignments: (Bits) Value Ahg946256 jgi|Araly1|946256|scaffold_702485.1 2724 0.0 > Ahg946256 jgi|Araly1|946256|scaffold_702485.1 Length=1840 Score = 2724 bits (1475), Expect = 0.0 Identities = 1733/1856 (93%), Gaps = 24/1856 (1%) Strand=Plus/Plus Query 32 AAAAACAAAAGGAGAGCAATGGActctgtttcttcttcttccttcctctcctccacattc 91 |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 3 AAAAACAAAAACAGAGCAATGGACTCTGTTTCTTCTTCTTCCTTCATCTCCTCCACATTC 62 Query 92 tctcttcatcactctcttcttcgccgccgatcttcctctcctact-ctcctccGTATCAA 150 |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 63 TCTCTTCACCACTCTCTTCTTCGCCGCCGATCTTCCTCTCCT-CTCCTCCTCCGTATCAA 121 Query 151 CTCCGCCGTCGTCGAAGAACGTTCTCCAATCACAAACCCAAGCGACAACAATGATCGTCG 210 |||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||||| Sbjct 122 CTCCGCAGTCGTCGAAGAACGTACTCCGATCACGAACCCAAGCGACAACAATGATCGTCG 181 Query 211 TAACAAACCCAAAACACTCCACAACCGAACCAATCACACCTTAGTCTCATCACCACCGAA 270 |||||||||||||| ||||||||||||||||||||||||| |||||| || || |||| Sbjct 182 TAACAAACCCAAAAAACTCCACAACCGAACCAATCACACCGCAGTCTCTTCTCCTGCGAA 241 Query 271 ACTCCGACCAGAAATGACTCTCGCAACAGCTCTCTTCACCACCGTCGAAGATGTAATCAA 330 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 ACCCCGACCAGAAATGACTCTCGCAACAGCTCTCTTCACCACCGTCGAAGATGTAATCAA 301 Query 331 CACGTTCATCGATCCACCTTCACGTCCTTCCGTTGATCCAAAACATGTCCTCTCTGATAA 390 |||||||||||||||||| |||||||||||||| ||||||||||| || ||||| ||||| Sbjct 302 CACGTTCATCGATCCACCGTCACGTCCTTCCGTCGATCCAAAACACGTTCTCTCCGATAA 361 Query 391 CTTCGCTCCTGTCCTCGACGAGCTTCCTCCAACAGACTGTGAAATCATCCACGGCACTCT 450 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 362 CTTCGCTCCTGTTCTCGACGAGCTTCCTCCAACAGACTGTGAAATCATCCACGGCTCTCT 421 Query 451 TCCACTGTCACTTAACGGCGCTTACATCCGTAACGGTCCAAATCCACAGTTTCTCCCTCG 510 ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 TCCGCCGTCACTCAACGGCGCTTACATCCGTAACGGTCCAAATCCACAGTTTCTCCCTCG 481 Query 511 TGGTCCTTACCATCTCTTCGACGGCGACGGTATGCTTCACGCCATAAAAATCCACAACGG 570 |||||||||||||||||| ||||||||||||||||||||||| || ||||| || || Sbjct 482 TGGTCCTTACCATCTCTTTGACGGCGACGGTATGCTTCACGCGATTCGTATCCATAATGG 541 Query 571 TAAAGCCACTCTCTGTAGCAGATACGTCAAGACTTATAAATACAACGTCGAGAAACAAAC 630 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 542 TAAAGCCACTCTCTGTAGCAGATACGTCAAGACTTATAAGTACAACGTGGAGAAACAAAC 601 Query 631 CGGAGCTCCGGTTATGCCTAACGTGTTTTCCGGATTCAACGGTGTAACGGCGTCAGTAGC 690 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 602 CGGAGCTCCGGTTATGCCTAACGTGTTTTCCGGATTTAACGGTGTAACGGCATCAGTAGC 661 Query 691 TCGTGGAGCTTTAACGGCAGCTAGGGTTTTAACCGGACAGTATAATCCGGTTAACGGCAT 750 |||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| Sbjct 662 TCGTGGAGCTTTAACGGCGGTTAGAGTTTTAACCGGACAGTATAATCCGGTTAACGGCAT 721 Query 751 TGGTTTAGCTAATACAAGTCTAGCTTTCTTCAGTAACCGTCTCTTTGCTTTAGGTGAATC 810 ||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||||| Sbjct 722 TGGTTTAGCTAATACAAGTCTTGCTTTCTTCTGTAACCGTCTCTTCGCTTTAGGAGAATC 781 Query 811 TGATTTACCCTACGCCGTCCGATTAACCGAATCAGGAGATATTGAAACGATCGGACGGTA 870 |||||||||||||| |||||||||||| || || |||||||||||||||||||||||||| Sbjct 782 TGATTTACCCTACGTCGTCCGATTAACTGATTCTGGAGATATTGAAACGATCGGACGGTA 841 Query 871 CGATTTCGACGGGAAATTAGCGATGAGTATGACAGCTCATCCTAAAACCGATCCAATAAC 930 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 842 CGATTTCGACGGGAAATTAGCGATGAGTATGACAGCTCATCCAAAAATCGATCCAATAAC 901 Query 931 CGGAGAAACTTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTTTAACATATTTCCGGTT 990 |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 902 CGGAGAGACTTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTTTAACGTTTTTCCGGTT 961 Query 991 TGATTCCGCCGGGAAAAAACAAAGAGACGTTCCGATATTCTCGATGACGTCTCCGTCGTT 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 962 TGATTCCGCCGGGAAAAAACAAAGAGACGTTCCGATATTCTCGATGACGTCTCCGTCGTT 1021 Query 1051 TCTCCATGACTTCGCGATCACGAAACGTCACGCGATTTTCGCAGAGATTCAGCTTGGCAT 1110 |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| || Sbjct 1022 TCTCCATGACTTCGCGATCACGAAACGTCACGCGATTTTCGCGGAGATTCAGATTGGGAT 1081 Query 1111 GAGGATGAA-CATGTTGGATTTG--GTTCTCGAAGGTGGTTCTCCGGTTGGTACTGATAA 1167 ||||||||| | | |||||||| ||| | |||||||||||||||||||||| |||||| Sbjct 1082 GAGGATGAATCC-GATGGATTTGATGTT-T-GAAGGTGGTTCTCCGGTTGGTAATGATAA 1138 Query 1168 CGGAAAAACTCCAAGGCTTGGAGTGATTCCTAAGTACGCCGGAGATGAGTCGGAGATGAA 1227 ||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1139 CGGAAAAACACCGAGGCTTGGAGTGATTCCAAAGTACGCCGGAGATGAATCGGAGATGAA 1198 Query 1228 ATGGTTCGAAGTTCCTGGATTCAATATCATTCACGCTATTAATGCTTGGGATGAAGATGA 1287 ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 1199 ATGGTTCGAAGTTCCTGGATTTAATATCATTCACGCCATTAATGCTTGGGATGAAGACGA 1258 Query 1288 TGGAAACAGCGTCGTTTTGATTGCACCGAATATTATGTCGATTGAACATACTTTAGAGAG 1347 ||||||| |||||||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 1259 TGGAAACTCCGTCGTTTTGATCGCTCCGAATATTATGTCAATTGAACATACTTTAGAGAG 1318 Query 1348 GATGGATCTGGTTCATGCTTTGGTGGAGAAGGTGAAGATCGATCTCGTCACCGGGATTGT 1407 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1319 GATGGATTTGGTTCACGCTTTGGTGGAGAAGGTGAAGATCGATCTCGTCACCGGAATTGT 1378 Query 1408 GAGACGTCATCCGATCTCAGCGAGGAATCTCGATTTCGCTGTGATTAATCCGGCGTTTCT 1467 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 GACACGTCATCCGATTTCAGCGAGGAATCTCGATTTCGCTGTGATTAATCCGGCGTTTCT 1438 Query 1468 CGGGAGAT-GTAGCAGGTACGTTTACGCGGCGATTGGAGATCCGATGCCGAAGATCTCCG 1526 ||| ||| | ||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 1439 CGGAAGACAG-AGCAGGTACGTTTACGCGGGGATTGGAGATCCGATGCCGAAAATCTCCG 1497 Query 1527 GTGTGGTGAAGCTTGATGTGTCTAAAGGAGATCGGGATGATTGTACGGTGGCCCGTAGAA 1586 | || |||||||||||||||||||||||||||||||||||||| |||||||| |||| || Sbjct 1498 GAGTTGTGAAGCTTGATGTGTCTAAAGGAGATCGGGATGATTGCACGGTGGCGCGTAAAA 1557 Query 1587 TGTACGGTTCAGGTTGTTACGGCGGAGAACCGTTTTTCGTAGCTAGGGATCCTGGTAATC 1646 |||||||| |||||||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 1558 TGTACGGTAAAGGTTGTTACGGTGGTGAACCGTTTTTCGTAGCTAGGGATCCTGGGAATC 1617 Query 1647 CGGAGGCGGAGGAGGATGATGGTTATGTGGTGACGTATGTTCACGATGAAGTGACTGGAG 1706 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1618 CGGAGGCGGAGGAGGATGATGGTTACGTGGTGACGTATGTTCACGATGAAGTGACTGGAG 1677 Query 1707 AATCGAAGTTTCTGGTGATGGACGCTAAATCGCCGGAGCTTGAAATCGTCGCCGCCGTGA 1766 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1678 AATCGAAGTTTCTGGTGATGGACGCAAAATCGCCGGAGCTTGAAATCGTCGCCGCCGTGA 1737 Query 1767 GGTTGCCGCGAAGGGTTCCGTACGGATTCCATGGGTTATTTGTCAAGGAAAGTGACCTTA 1826 || | |||||||||||||||||||||||||||||||||||||| ||||| |||||||| | Sbjct 1738 GGCTACCGCGAAGGGTTCCGTACGGATTCCATGGGTTATTTGTGAAGGAGAGTGACCT-A 1796 Query 1827 ATAAGCTTTAACAATATAGGTAACTGCAATAGTTAATAGAATAATTAAGT-CTTAA 1881 | || | || ||||||||||||||||| | |||||||||||| ||||| Sbjct 1797 A----CT--A----TA--GGTAACTGCAATAGTTAGTGGAATAATTAAGTTCTTAA 1840 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77932641270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5