BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19370.1
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492924 jgi|Araly1|492924|fgenesh2_kg.7__2357__AT4G19370.1 1343 0.0
> Ahg492924 jgi|Araly1|492924|fgenesh2_kg.7__2357__AT4G19370.1
Length=1022
Score = 1343 bits (727), Expect = 0.0
Identities = 925/1015 (91%), Gaps = 35/1015 (3%)
Strand=Plus/Plus
Query 58 GTATACGCCATCATCTATTTTCTTTAAAATGGTTTTGGAAATTTTATCATTTGATATAAT 117
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 19 GTATACGCCATCATCTATATTCTTTAAAATGGTTTTGGAAA-AAAATCATTTGATATAAT 77
Query 118 TAAG-A-ATTTTATTCTCTCTCTTTATT---TTC--CA-TCCTTATGTAG-AT--T-AAA 165
|||| | |||||| ||||||||||| || ||| | | ||||||||| | | |||
Sbjct 78 TAAGAATATTTTACTCTCTCTCTTTTTTCCATTCTTAATTTCTTATGTAGTTTGGTAAAA 137
Query 166 GAAC-TTTCCTCAAGCC-TA---TTAAAAGATAATTAAATAAATCCCCCTGAGAATTTGA 220
| || ||| || ||||| || || ||||| |||| ||| | | |||||||| ||||
Sbjct 138 G-ACGTTT-CT-AAGCCTTACTTTTTAAAGAAAATT-AAT---T-CGCCTGAGAAATTGA 189
Query 221 CTCAAATAATCTAAGG--T-GTAGCATTTATGTTGCAGAATTACATATATGTAAGTGCGT 277
|||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||
Sbjct 190 CTCAAATAATCTAAGGTATACTAGCATTTATGTTGTAAAATTACATATATGTAAGTGCGT 249
Query 278 CTGATTGATTTTGTCCACTAAAAACTATGCACAACCTTTTTCTCTACTCAGTCGTGTTCT 337
| |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct 250 CCCATTGATTTTGACCATTAAAAACTATGCACAACCTTTTTCTCAACTCAGTCGTGTTAT 309
Query 338 CTCTTGGTCTCGTTTCCTTCATCACATGTTTCGCAGCCGAGTTCAAGAGAACACAGAAAG 397
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 310 CTCTTGGTCTCGTTTCCTTCATCACATGTTTCACAGCCGAGTTCAAGAGAACAAAGAAAG 369
Query 398 AAGATATTCGATGGGACACAGAGAGGAACTGCTATGTACCCGGAAGCCATGCGTTCGGGC 457
||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||
Sbjct 370 AAGATATTCGATGGGACACGGAGAGGAACTGCTATGTACCCGAAAGCCATGCGTTTGGGC 429
Query 458 TTGGATCAGCCGCTGT-TCTTTGCTTCTGCCTTGCTCAGATCGTTGGGAACATAGTTGTG 516
|||||||||||||||| | |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 430 TTGGATCAGCCGCTGTGT-TTTGCTTCTGCCTTGCTCAGATCGTTGGAAACGTAGTTGTG 488
Query 517 TTCCGAAATCACCGGACAAGAACTAAAAGAGAAGATGGTTACAAGATTACTGATCTTACT 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TTCCGAAATCACCGGACAAGAACTAAAAGAGAAGATGGTTACAAGATTACTGATCTTACT 548
Query 577 TTACCTACGGTTCTATTGCTCCTGTCCTGGTCCAATTTTGTGGTAGTGGTATTGATTTTG 636
||||| || |||||||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 549 TTACCAACTGTTCTATTGCTCCTTTCCTGGTTCAATTTTGTGGTAGTGGTTTTGATTTTG 608
Query 637 AGTACCGCAATAAGCATGAGTCGAGCTCAAGCGTATGGAGAAGGATGGCTTGATGAAGAT 696
||||| |||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||
Sbjct 609 AGTACTGCAATAAGCATGAGCCGAACTCAAGCTTATGGAGAAGGATGGCTCGATGAAGAT 668
Query 697 TGTTACTTGGTCAAAGACGGTGTCTTTGCAGCTTCAGGCTGCTTAGCCATCCTTGGACTT 756
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 669 TGTTACCTGGTCAAAGACGGTGTCTTTGCAGCTTCAGGTTGCTTAGCCATCCTTGGACTT 728
Query 757 GGAGCTTTGACCATTTCAGCCACCAGGATCAAAGTAAAGAAACAACAACAAC---TTGTG 813
|||||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 729 GGAGCTTTGACCATATCAGCCACCAGGATTAAATTAAAGAAACAACAACAACAACTTGTT 788
Query 814 CAAGTCGTAATCAAAGACCAAAACCAAGACCAAAGGAGATCAATGGAAGAAGAACAAAAG 873
||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 789 CAAGTCGTAATCAAAGACCAAAACCAAGAACAGAGAAGATCAATGGAAGAAGAACAAAAC 848
Query 874 CATGATGAGCACCAAACGAACAAGTCAGAAAGTGTCATTCACTTGGTGGAAGAAGTGTCT 933
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 849 CATGATGAGCACCAAACGAACAAGTCAGAAACTGTCATTCACTTGGTGGAAGAAGTGTCT 908
Query 934 TCCACtaatataagcagaatataaaaataaatataaaacgaaaagtaaaaggggaaatat 993
|||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 909 TCCACTAATATAAGCAGAATATAAAA-TAAATATAACACGAAAAGTAAAAGAGGAAATAT 967
Query 994 CGGATATGCTATTATTTACAAAGATGTATATAATTGGTTAATGCACTTATTTAAT 1048
|||||||| |||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 968 CGGATATGTTATTATTTACAAAGTTGTATATAATTGGTTAATGCACTTATTGAAT 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39838448265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5