BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G19400.1

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg354810 jgi|Araly1|354810|fgenesh1_pg.C_scaffold_7001983           721    0.0  
  Ahg951622 jgi|Araly1|951622|scaffold_803509.1                        104    9e-22


> Ahg354810 jgi|Araly1|354810|fgenesh1_pg.C_scaffold_7001983
Length=447

 Score =  721 bits (390),  Expect = 0.0
 Identities = 429/448 (96%), Gaps = 2/448 (0%)
 Strand=Plus/Plus

Query  81   ATGGATTCGGCGTTTGTGGACAGAGCTTGGGACAAATGGGTTACTACGGGTAACGTTGGT  140
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct  1    ATGGATTCGGCGTTTGTGGACAGAGCTTGGGACAAATGGGTTACTTCGGGTAACGTTGGC  60

Query  141  TCTTCAGGTAATCCATTGAAGGCTGCTATTTTGATTAACTATGATCCTACAGGACCTTCT  200
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCTTCAGGCAATCCATTGAAGGCTGCTATTTTGATTAACTATGATCCTACAGGACCTTCT  120

Query  201  CGTCTCTTATCAACAATAGCTAAACAAGAAGGGATTGATATCTATCCAGTTGATCTAAAG  260
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGTCTCTTATCAACAATAGCTGAACAAGAAGGGATTGATATCTATCCAGTTGATCTAAAG  180

Query  261  CAATTTATAGATTTCATGAGATGTGGCAATCTTCCTACTGAGACTTTTGTTCTTGGATCC  320
            ||||| || |||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct  181  CAATTCATCGATTTCATGAGACGTGGCAATCTTCCTACTGAGACCTTTGTTCTTGGATCC  240

Query  321  AACCAATACATAATAACATCTATTCATGAGAACTGGTTCGCTGCTAGGTGTTTAAACACT  380
            || |||||||| |||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct  241  AATCAATACATTATAACATCAATTCATGAGAATTGGTTCGCTGCTCGGTGTTTAAACACT  300

Query  381  TCCCAGCCTGCTGGTGAAGGAGCTATTGTTATGCAGACTGCGGTTTACGTGTTGGTTGCT  440
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TCCCAGCCTACTGGTGAAGGAGCTATTGTTATGCAGACTGCGGTTTACGTGTTGGTTGCT  360

Query  441  CTATATGATGGATCAATTGGTTCAGCTTCTCAAGCTATGGCTGCAGCTGATCAGTTTGCA  500
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  361  TTATATGATGGATCAATTGGTTCAGCTTCTCAAGCTGTGGCTGCAGCTGATCAGTTTGCG  420

Query  501  TCGCAGCTGAGTCGGAAA-AACTTCTAG  527
            |||||||||||||| ||| |||||||||
Sbjct  421  TCGCAGCTGAGTCG-AAAGAACTTCTAG  447


> Ahg951622 jgi|Araly1|951622|scaffold_803509.1
Length=274

 Score =  104 bits (56),  Expect = 9e-22
 Identities = 71/78 (91%), Gaps = 2/78 (3%)
 Strand=Plus/Plus

Query  443  ATATGATGGATCAATTGGTTCAGCTTCTCAAGCTATGGCTGCAGCTGATCAGTTTGCATC  502
            |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| 
Sbjct  137  ATATGATGGATCAATTGGTTCAGCTTCTCAAGCTGTGGCTGCAGTTGATCAGTTTGCATT  196

Query  503  GCAGCT-GAGTCGGAAAA  519
            |||| | | ||| |||||
Sbjct  197  GCAGTTTG-GTCAGAAAA  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27143516904


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5