BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19400.1 Length=737 Score E Sequences producing significant alignments: (Bits) Value Ahg354810 jgi|Araly1|354810|fgenesh1_pg.C_scaffold_7001983 721 0.0 Ahg951622 jgi|Araly1|951622|scaffold_803509.1 104 9e-22 > Ahg354810 jgi|Araly1|354810|fgenesh1_pg.C_scaffold_7001983 Length=447 Score = 721 bits (390), Expect = 0.0 Identities = 429/448 (96%), Gaps = 2/448 (0%) Strand=Plus/Plus Query 81 ATGGATTCGGCGTTTGTGGACAGAGCTTGGGACAAATGGGTTACTACGGGTAACGTTGGT 140 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 ATGGATTCGGCGTTTGTGGACAGAGCTTGGGACAAATGGGTTACTTCGGGTAACGTTGGC 60 Query 141 TCTTCAGGTAATCCATTGAAGGCTGCTATTTTGATTAACTATGATCCTACAGGACCTTCT 200 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTTCAGGCAATCCATTGAAGGCTGCTATTTTGATTAACTATGATCCTACAGGACCTTCT 120 Query 201 CGTCTCTTATCAACAATAGCTAAACAAGAAGGGATTGATATCTATCCAGTTGATCTAAAG 260 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 121 CGTCTCTTATCAACAATAGCTGAACAAGAAGGGATTGATATCTATCCAGTTGATCTAAAG 180 Query 261 CAATTTATAGATTTCATGAGATGTGGCAATCTTCCTACTGAGACTTTTGTTCTTGGATCC 320 ||||| || |||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 181 CAATTCATCGATTTCATGAGACGTGGCAATCTTCCTACTGAGACCTTTGTTCTTGGATCC 240 Query 321 AACCAATACATAATAACATCTATTCATGAGAACTGGTTCGCTGCTAGGTGTTTAAACACT 380 || |||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||| Sbjct 241 AATCAATACATTATAACATCAATTCATGAGAATTGGTTCGCTGCTCGGTGTTTAAACACT 300 Query 381 TCCCAGCCTGCTGGTGAAGGAGCTATTGTTATGCAGACTGCGGTTTACGTGTTGGTTGCT 440 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCCCAGCCTACTGGTGAAGGAGCTATTGTTATGCAGACTGCGGTTTACGTGTTGGTTGCT 360 Query 441 CTATATGATGGATCAATTGGTTCAGCTTCTCAAGCTATGGCTGCAGCTGATCAGTTTGCA 500 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 361 TTATATGATGGATCAATTGGTTCAGCTTCTCAAGCTGTGGCTGCAGCTGATCAGTTTGCG 420 Query 501 TCGCAGCTGAGTCGGAAA-AACTTCTAG 527 |||||||||||||| ||| ||||||||| Sbjct 421 TCGCAGCTGAGTCG-AAAGAACTTCTAG 447 > Ahg951622 jgi|Araly1|951622|scaffold_803509.1 Length=274 Score = 104 bits (56), Expect = 9e-22 Identities = 71/78 (91%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 443 ATATGATGGATCAATTGGTTCAGCTTCTCAAGCTATGGCTGCAGCTGATCAGTTTGCATC 502 |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 137 ATATGATGGATCAATTGGTTCAGCTTCTCAAGCTGTGGCTGCAGTTGATCAGTTTGCATT 196 Query 503 GCAGCT-GAGTCGGAAAA 519 |||| | | ||| ||||| Sbjct 197 GCAGTTTG-GTCAGAAAA 213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27143516904 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5