BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19410.1 Length=1475 Score E Sequences producing significant alignments: (Bits) Value Ahg492921 jgi|Araly1|492921|fgenesh2_kg.7__2354__AT4G19410.1 2172 0.0 Ahg494455 jgi|Araly1|494455|fgenesh2_kg.8__271__AT5G45280.2 989 0.0 > Ahg492921 jgi|Araly1|492921|fgenesh2_kg.7__2354__AT4G19410.1 Length=1439 Score = 2172 bits (1176), Expect = 0.0 Identities = 1362/1449 (94%), Gaps = 23/1449 (2%) Strand=Plus/Plus Query 1 GAAGACATCAATGACTGGCTTCCATAAACTTTTAAAGCTCTCTCTTTCAGATTCCTCTCT 60 ||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAGACAACCATGGCTGGCTTCCATAAACTTTTAAAGCTCTCTCTTTCAGATTCCTCTCT 60 Query 61 ATCCATTTCATT-A-ACACC-AAAAC----C-TTTTTCTTCTCTCTAACCAAACAAG-A- 110 |||||| ||||| | ||||| ||||| | ||||||||||||||||||||||||| | Sbjct 61 ATCCATCTCATTAACACACCAAAAACAAAACTTTTTTCTTCTCTCTAACCAAACAAGAAT 120 Query 111 --AGAGGACTCCATTTTCGCAAGAATGGGGAGGCTTAAGCAATGTTGGTCAAGTCTGCTA 168 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 121 TTAGAGGACTCCATTTTCACAAGAATGGGGAGGCTTAAGCAATGTTGGTCAAGTTTGCTA 180 Query 169 GTATTGGCAGTGTTGGTGATCGGAACTGGAGCCGTTCCCATCACTTATCTCCAAAGCGCC 228 || ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 181 GTGTTGGCAGTGGTGGTGATCGGAACCGGAGCCGTTCCCATCACTTATCTACAAAGCGCC 240 Query 229 GTCGCTAAAGGAGCCGTGTGTTTGGATGGGAGTGCACCAGCTTACCATTTTGACAAAGGG 288 || || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 241 GTTGCCAAAGGAGCCGTGTGTTTGGATGGGAGTGCACCAGCTTATCATTTCGACAAAGGG 300 Query 289 TTTGGTTCGGGTGTTAACAATTGGATCGTCCACATGGAGGGAGGAGGATGGTGTACCGAC 348 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTTGGTTCGGGTGTTAACAATTGGATCGTCCACATGGAGGGAGGAGGATGGTGTACCGAT 360 Query 349 GTTGCTTCATGTAATGAACGTAAGGGTACAATGAAGGGTTCTTCCAAATTCATGAACAAA 408 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 GTCGCTTCATGTAATGAACGTAAGGGTACAATGAAGGGTTCGTCCAAATTCATGAACAAA 420 Query 409 GACTTTGGATTTTCCGGTATCTTGGGTGGCAAGCAAAGCACTAACCCAGATTTCTACAAT 468 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 421 GACTTTGGATTTTCCGGTATCTTGGGTGGCAAGCAAAGCACTAACCCAGATTTTTACAAT 480 Query 469 TGGAACAGAATCAAAGTACGATATTGTGACGGATCATCCTTTACCGGCAATGTAGAAGCC 528 |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct 481 TGGAACAGAATCAAAGTACGATATTGCGATGGGTCATCCTTTACCGGCAATGTAGAAGCC 540 Query 529 GTTAATCCGGCAAACAAGCTGTTCTTCCGCGGTGCCCGAGTTTGGCGTGCGGTGGTTGAT 588 ||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 541 GTTAATCCGGCGAATAAGCTGTTCTTCCGCGGTGCCCGAGTTTGGCGTGCGGTGATTGAT 600 Query 589 GATCTTATGGCTAAAGGAATGAAAAACGCTCAAAACGCTATACTCTCCGGTTGTTCAGCT 648 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 601 GATCTTATGGCTAAAGGAATGAAAAACGCTCAAAACGCGATACTCTCCGGTTGTTCAGCC 660 Query 649 GGAGCATTGGCTGCGATTCTTCATTGTGACACTTTCCGTGCCATACTTCCCCGAACAGCT 708 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 661 GGAGCATTGGCCGCGATTCTACATTGTGACACTTTCCGTGCCATACTTCCCCGAACAGCT 720 Query 709 AGCGTCAAATGTGTTTCTGATGCCGGTTACTTTATCCACGGTAAAGATATCACAGGAGGA 768 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AGCGTCAAATGTGTTTCCGATGCCGGTTACTTTATCCACGGTAAAGATATCACAGGAGGA 780 Query 769 TCATACATTC-AATCATATTACAGCAAAGTCGTCGCACTCCACGGATCTGCAAAGAGTCT 827 ||||||| || |||| || ||||||||||||||||| ||||| ||||||||||||||||| Sbjct 781 TCATACA-TCGAATCGTACTACAGCAAAGTCGTCGCGCTCCATGGATCTGCAAAGAGTCT 839 Query 828 TCCTGTTTCTTGTACCTCAAAAATGAAACCAGAACTCTGTTTCTTCCCGCAATACGTCGT 887 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 840 TCCTGTTTCTTGCACCTCAAAAATGAAACCAGAACTCTGTTTCTTCCCCCAATATGTCGT 899 Query 888 TCCTTCCATGCGAACACCGCTCTTTGTCATCAATGCCGCTTTTGATTCTTGGCAGATCAA 947 ||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||| Sbjct 900 TCCTTCCATGCGAACACCGCTCTTTGTCATCAACGCCGCCTACGATTCATGGCAGATCAA 959 Query 948 GAACGTTTTGGCTCCAACTGCTGTTGATAAGGGAAAAGAGTGGAAGAATTGTAAGCTTGA 1007 ||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| Sbjct 960 GAACGTTTTGGCTCCCACTGCTGTTGATAAGGGAAAACAATGGAAGAATTGTAAGCTTGA 1019 Query 1008 TCTTAAGAAATGTAGTGCCGCTCAGCTCAAAACCGTCCAAGGGTTTAGAGATCAGATGAT 1067 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 TCTCAAGAAATGTAGTGCCGCTCAGCTCAAAACCGTCCAAGGGTTTAGAGATCAGATGAT 1079 Query 1068 GCGAGCATTGTCACCGGTTCACAGTACACCGTCTAGAGGATTGTTCTTAGACTCGTGTCA 1127 ||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1080 GCGTGCATTATCACCGGTTCACAGTACACCGTCGAGAGGGTTGTTCTTAGACTCGTGTCA 1139 Query 1128 CGCTCATTGCCAAGGAGGAAGCGCCGCCTCTTGGTCCGGTGACAAAGGTCCCCAAGTCGC 1187 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1140 CGCTCATTGCCAAGGAGGAAGCGCCGCCTCTTGGTCCGGTGACAAAGGTCCCCAAATCGC 1199 Query 1188 CAATACGAGAATTGCGAAAGCAGTCGGAAACTGGTTTTATGGCCGGAGTGCATTTCAGAA 1247 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1200 TAATACGAGAATTGCGAAAGCAGTCGGAAACTGGTTTTATGGTCGGAGTGCATTTCAGAA 1259 Query 1248 GATAGATTGTCCGTCGCCGACTTGTAATCCTACTTGTCCTGCTATCTCTACTGAAGACTA 1307 |||||| |||||||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct 1260 GATAGACTGTCCGTCGCCGACTTGTAATCCTACGTGTCCTGCAATTTCAACTGAAGACTA 1319 Query 1308 GAATCATCTCTAAATGTTCAAttttttttAATTTGAAATTGAAAGAGCTCGCAAACATTT 1367 ||||||||| ||||||||||||||| ||||| || || ||||| ||| | ||||||| Sbjct 1320 GAATCATCT--AAATGTTCAATTTTT---AATTTCAA-TTAAAAGATCTCTCGAACATTT 1373 Query 1368 TGGATTTGTTTTCCAAATCGGATCAATAATAATCACTGCAATTTGAATAAAGAGTATATC 1427 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1374 TGGATTTGTTTTCCAAATCGGATCAATAAT---CACTGCAATTTGAATAAAGAGTATCTT 1430 Query 1428 TTTACTTTG 1436 ||||||||| Sbjct 1431 TTTACTTTG 1439 > Ahg494455 jgi|Araly1|494455|fgenesh2_kg.8__271__AT5G45280.2 Length=1414 Score = 989 bits (535), Expect = 0.0 Identities = 999/1218 (82%), Gaps = 51/1218 (4%) Strand=Plus/Plus Query 119 CCATTTTCGCAAGAATGGGGAGGCTTAAGCAA-TGTTGGTCAAGTCTGCTAGTATTGGCA 177 |||||||| ||||||||| |||||| |||||| || ||||||||| | | || |||| Sbjct 101 CCATTTTCTCAAGAATGGCGAGGCTAAAGCAATTG-TGGTCAAGTTTTTTGGTGCTGGCC 159 Query 178 GTGTTGGTGATCGGAACTGGAGCCGTTCCCATCACTTATCTCCAAAGCGCCGTCGCTAAA 237 ||| ||||||| || | |||| || |||||||| ||||| || ||| || |||||| Sbjct 160 GTGGTGGTGATTGGGGCCAGAGCTGTGCCCATCACATATCTTGAATCCGCGGTAGCTAAA 219 Query 238 GGAGCCGTGTGTTTGGATGGGAGTGCACCAGCTTACCATTTTGACAAAGGG-TTTGGTTC 296 ||||| |||||||||||||| || |||||||| |||||||| || ||||| | ||| || Sbjct 220 GGAGCTGTGTGTTTGGATGGTAGCGCACCAGCATACCATTTCGA-TAAGGGATCTGGCTC 278 Query 297 GGGTGTTAACAATTGGATCGTCCACATGGAGGGAGGAGGATGGTGTACCGACGTTGCTTC 356 || | |||||||||||||| || ||||| |||||||||||||| || || | ||| | Sbjct 279 AGGAGCGAACAATTGGATCGTTCATATGGAAGGAGGAGGATGGTGCACTGATATAGCTAC 338 Query 357 AT--GTAATGAACGTAAGGGTACAATGAAGGGTTCTTCCAA-ATTCATGAACAAAGACTT 413 || || | ||||||| ||||||||||||||||||| || || |||||||||||||| Sbjct 339 ATGCGT-A-CAACGTAAAAGTACAATGAAGGGTTCTTCTAAGCTT-ATGAACAAAGACTT 395 Query 414 TGGATTT-TCCGGTATCTTGGGTGGCAAGCAAAGCACTAACCCAGA-TTTCTACAATTGG 471 ||| ||| || |||||||||||||||||||||||||| || ||||| ||| ||||||||| Sbjct 396 TGG-TTTCTCTGGTATCTTGGGTGGCAAGCAAAGCACCAATCCAGACTTT-TACAATTGG 453 Query 472 AACAGAATCAAAGTACGATATTGTGACGGATCATCCTTT-ACCGGCAATGTAGAAGCCGT 530 || ||||||||||| || ||||| || || |||| |||| || ||| || ||||||| || Sbjct 454 AATAGAATCAAAGTTCGGTATTGCGATGGTTCAT-CTTTCACTGGCGATATAGAAGCTGT 512 Query 531 TAATCCGGCAAACAAGCTGTTCTTCCGCGGTGCCCGAGTTTGGCGTGCGGTGGTTGATGA 590 | ||||| | |||||||||||||| |||||||| | ||||||||||||||| | ||||| Sbjct 513 TGATCCGACGAACAAGCTGTTCTTTCGCGGTGCTAGGGTTTGGCGTGCGGTGATCGATGA 572 Query 591 TCTTATGGCTAAAGGAATGAAAAACGCTCAAAACGCTATACTCTCCGGTTGTTCAGCTGG 650 |||||||||||| || |||| |||||||||||||| |||||||| |||||||||||||| Sbjct 573 TCTTATGGCTAAGGGGATGAGCAACGCTCAAAACGCGATACTCTCTGGTTGTTCAGCTGG 632 Query 651 AGCATTGGCTGCGATTCTTCATTGTGAC-ACTTTCC-GTGCCATACTTCCCCGAA-CAGC 707 |||||||||||||||||| ||||| ||| | || | || |||| || ||| || | || Sbjct 633 AGCATTGGCTGCGATTCTACATTGCGACCAGTT-CAAGT-CCATTCT-CCCTAAAACGGC 689 Query 708 TA-GCGTCAAATGTGTTTCTGATGCCGGTTACTTTATCCACGGTAAAGATATCACAGGAG 766 || | ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| Sbjct 690 TAAG-GTCAAATGTGTTTCTGACGCCGGTTACTTCATCCACGGTAAAGATATCACTGGAG 748 Query 767 GATCATACATTCAATCATATTACAGC-AAAGTCGTCGC-ACTCCACGGATCTGCAAAGAG 824 |||| ||||| ||||| || ||| || |||||||| || || |||||||||||||||||| Sbjct 749 GATCTTACATCCAATCGTACTAC-GCCAAAGTCGTAGCGAC-CCACGGATCTGCAAAGAG 806 Query 825 TCTTCCTGTTTCTTGTACCTCAAAAATGAAACCAGAACTCTGTTTCTTCCCGCAATACGT 884 ||| |||| |||||| ||||||| ||||| || || | ||||||||||| |||||||| Sbjct 807 TCTACCTGCTTCTTGCACCTCAAGTATGAAGCCCGAGTTGTGTTTCTTCCCTCAATACGT 866 Query 885 CGTTCCTTCCATGCGAACACCGCTCTTT-GTCATCAATGCCGCTTTTGATTCTTGGCAGA 943 | || || ||| ||||||||| ||| |||||||||||||| || ||||||||||||| Sbjct 867 TGCTCAGACCTTGCAAACACCGCT-TTTCGTCATCAATGCCGCCTTCGATTCTTGGCAGA 925 Query 944 TCAAGAACGTTTTGGCTCCAAC-TGCTGTTGATAAGGGAAAAGAGTGGAAGAATTGTAAG 1002 |||||||||||||||| ||||| | |||||||||| | |||| |||||||| ||||||| Sbjct 926 TCAAGAACGTTTTGGCGCCAACCT-CTGTTGATAAAAGCAAAGCGTGGAAGACTTGTAAG 984 Query 1003 CTTGATCTTAAGAAATGTA-GTGCCGCTCAGCT-CAAAACCGTCCAAGGGTTTAGAGATC 1060 |||||||||||||| |||| | ||||||||||| |||| |||| ||||||| |||||| | Sbjct 985 CTTGATCTTAAGAAGTGTACG-GCCGCTCAGCTTCAAA-CCGTTCAAGGGTATAGAGACC 1042 Query 1061 A-GATGATG-CGAGCATTGTCACCGGTTC-A-CAGTACACCGTCTAGAGGATTGTTCTTA 1116 | | || || | || ||| ||||||||| | | | |||| | || |||||||||||| Sbjct 1043 AAG-TGTTGGCT-GCGTTGGCACCGGTTCGATCCG-ACACAA-CGAGCGGATTGTTCTTA 1098 Query 1117 GACTCGTGTCACGCTCATTGCCAAGGAGGAAGCGCCGCCTCTTGGTCCGGTGACAAAGGT 1176 |||||||| ||||||||||||||||| |||||||| ||| |||||||||| || |||| Sbjct 1099 GACTCGTGCCACGCTCATTGCCAAGGTGGAAGCGCTGCCACTTGGTCCGGCGATGGAGGT 1158 Query 1177 CCC-CAAGTCGCCAATACGAGAATTGCGAAAGCAGTCGGAAACTGGTT-TTATGGCCGGA 1234 || || || || ||||||| ||| || || || || | | | ||||| || || ||| Sbjct 1159 CCTACA-GTGGCGAATACGAAAATGGCTAAGGCGGTTGCAGATTGGTTCTT-TGAAAGGA 1216 Query 1235 GTGCATTTCAGAAGATAGATTGTCCGTCGCCGACTTGTAATCCTACTTGTCCTGCTA-TC 1293 || | |||||||| ||||||||| | |||| || ||| || |||||||| ||||| | | Sbjct 1217 GTACGTTTCAGAACATAGATTGTTCATCGCTGAATTGCAACCCTACTTGCCCTGC-AGTA 1275 Query 1294 TCTACTGAAGACTAGAAT 1311 |||||||||||||| ||| Sbjct 1276 TCTACTGAAGACTA-AAT 1292 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55192765005 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5