BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19470.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354804 jgi|Araly1|354804|fgenesh1_pg.C_scaffold_7001977 1037 0.0
> Ahg354804 jgi|Araly1|354804|fgenesh1_pg.C_scaffold_7001977
Length=2061
Score = 1037 bits (561), Expect = 0.0
Identities = 826/951 (87%), Gaps = 30/951 (3%)
Strand=Plus/Plus
Query 292 CAGTACTTGGATGTTCATGGCTGTATCTCACTCGAAACAGTTTCAAAACCCATGACGCTT 351
||||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1108 CAGTACTTGGACGCTCATGGCTGTATCTCACTCGAAACAGTAGCAACACCCATGACGCTT 1167
Query 352 CTAGTGATAGCTGAAAAGACCCATTCTACTTTCGTATTCACGGATTGCTACAAGCTAAAC 411
|| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1168 CTTGTGATAGCTGAAAAGACACATTCTACTTTCGTATTCACGGATTGCTTCAAGCTAAAC 1227
Query 412 CGAGATGCACAAGAAAAAATTGTGGCTCATACTCAGCTCAAGAGTCAAATACTGGCGAAT 471
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1228 CGAGATGCACAAGAAAATATTGTGGCTCATACTCAACTCAAGAGTCAAATACTGGCGAAT 1287
Query 472 AGATCTTTTCAACTTAATCATAAGGTCC-A-A---TC-------TC----T--GGAACTA 513
||||| |||||| |||||||||||||| | | || || | |||||||
Sbjct 1288 GGATCTCTTCAACGTAATCATAAGGTCCAATATCTTCGGTTTTATCATTTTCAGGAACTA 1347
Query 514 GTTTTGGAACCTTTATCTGCTGTAAGTTTTCCAGGGAATGATTTGCCACTATGGTTCCGC 573
||||||||||||||| ||||||||||||||||||| || ||||||||| |||||||| ||
Sbjct 1348 GTTTTGGAACCTTTAGCTGCTGTAAGTTTTCCAGGAAACGATTTGCCATTATGGTTCTGC 1407
Query 574 CATCAGAGAATTGGATCTTCAATGGAAACCAACCTGCCTTCACACTGGTGCGACGATAAA 633
||||||||||| |||||||||||||||||| |||| ||| |||||||||| |||||||||
Sbjct 1408 CATCAGAGAATGGGATCTTCAATGGAAACCCACCTACCTCCACACTGGTGTGACGATAAA 1467
Query 634 TTCATTGGTCTTTCTCTCTGCACGGTTGTCTCTTTCAAGGACTATGAAGATAGAACCAGC 693
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1468 TTCATTGGCCTTTCTCTCTGCATTGTTGTCTCTTTCAAGGACTATGAAGATAGAACCAGC 1527
Query 694 CGGTTCTCCGTGATATGCAAGTGCAAGTTCAGAAACGAAGACGGTGATTACATCAGCTTT 753
|| ||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 1528 CGTTTCTCGGTAATATGCAAGTGCAAGTTTAGAAACGAAGACGGTAATTCCATCAGCTTT 1587
Query 754 ACATGTAATCTTGGGGGATGGAAAGAG-CAGTGTGGATCGTCTAGCCAT-GAAGAATCAA 811
|| || |||||||| ||||||| ||| || | || ||| || |||| | |||||| |||
Sbjct 1588 ACTTGCAATCTTGGAGGATGGACCGAGTCA-TCTGCATCATCAAGCC-TCGAAGAACCAA 1645
Query 812 GAAGACTTAGCTCTGATCATGTGTTCATCAGTTATAGCAACTGTTACCATGCCAAGAAAA 871
|| |||||| |||||||||||||||||||||||| | |||||||| | ||||||||||||
Sbjct 1646 GACGACTTACCTCTGATCATGTGTTCATCAGTTACAACAACTGTTTCTATGCCAAGAAAA 1705
Query 872 ACGATGATCTCAATAGATGTTGCAACACCACAGCCTCGTTCAAATTTTTTGTTACTGATG 931
| ||||||||||||| |||||||||||||| ||||| |||||||| ||| ||||||||
Sbjct 1706 GCCATGATCTCAATAGGTGTTGCAACACCACCGCCTCATTCAAATTCTTTAATACTGATG 1765
Query 932 G-CAGAGCCAAAAGAAAACTAGATTGCTGTGAGGTGGTGAAATGCGGGATGAGCT-TGTT 989
| || |||||||||||| | ||||| ||||||||| |||||||| |||||||||| | ||
Sbjct 1766 GACA-AGCCAAAAGAAAGCCAGATTTCTGTGAGGTAGTGAAATGTGGGATGAGCTAT-TT 1823
Query 990 ATATGCACCAGATGAGAATGATTGTAGGTTGCATGGG-TTACACGAGAATAATCTTGAGA 1048
||||||||| ||||||||||||| ||| ||||| ||| ||||| ||||||| || ||||
Sbjct 1824 ATATGCACCGGATGAGAATGATTATAGATTGCA-GGGATTACAGGAGAATAGCCTCGAGA 1882
Query 1049 AAGAGATATCTGGAAAAGATACAGAACTAAACGAAACCGCCTTGGATAAAGTTGTTGTGT 1108
||| | ||||| ||||||| |||||||||| |||||||| |||||| ||| || | |||
Sbjct 1883 AAGCGGTATCTAGAAAAGAAACAGAACTAATTGAAACCGCATTGGATGAAGCTGCTATGT 1942
Query 1109 CCAAGAGAGGCCGTTTATGTGTACAAGAAGAAGAGCTACTGAACAGGAAAAGAATA-AAG 1167
|||||| || |||||||||| ||||||| ||||||||||||||||||||||||| | |||
Sbjct 1943 CCAAGAAAGCCCGTTTATGTTTACAAGAGGAAGAGCTACTGAACAGGAAAAGAA-AGAAG 2001
Query 1168 GAAGACGTCTCTTTTGGTAATTACGATTGTTCTGTAACTTCTATTCTTAGT 1218
|| || |||||||| | | | || ||||||||||||||| || |||||
Sbjct 2002 GATGATATCTCTTTTTCTGGTCATGAGTGTTCTGTAACTTCTGTTTTTAGT 2052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5