BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19600.1
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492906 jgi|Araly1|492906|fgenesh2_kg.7__2339__AT4G19600.1 3066 0.0
Ahg494461 jgi|Araly1|494461|fgenesh2_kg.8__277__AT5G45190.1 1110 0.0
> Ahg492906 jgi|Araly1|492906|fgenesh2_kg.7__2339__AT4G19600.1
Length=2061
Score = 3066 bits (1660), Expect = 0.0
Identities = 1942/2071 (94%), Gaps = 47/2071 (2%)
Strand=Plus/Plus
Query 1 GTTCTTTCCTTTCTCGCGTTTCTTCTCCTAGGGTTAGGGTTCGACGAACGCAGCTGTTCC 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 GTTCTTTCCTTTCTCGCGTTTCTTCT-CTAGGGTTAGGGTTCGACGAACGCAGCTGTTCT 59
Query 61 ACGCGTTTAGTTTCAATTCTCCATCGAAGAAGCCATAATCCGATTCCTAAAGAGCTTACA 120
|||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct 60 ACGCGTTTAGCTTCAATTCGCCATTGAAGAAGCCATAATCTGATTCCTAAAGAGCTTACA 119
Query 121 TTTGTTACTCAACTTTAAAGTTTTGACGCTAGAGATTACTATCCTCTTG-C--TGGGAAC 177
|||| || |||||| ||||||||||||||||||||||| ||||| ||| | | || |
Sbjct 120 TTTGATATTCAACTATAAAGTTTTGACGCTAGAGATTAAGATCCTATTGCCAGTAGGTA- 178
Query 178 TCA-ACGTGACCAGACTGTGTTTGAAAGATAGCAATGGCTGGAGTATTA---GCTGGGGA 233
||| || | ||||| |||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 179 TCATAC-T--TCAGACCGTGTGTGAAAGATACCAATGGCTGGAGTATTAGCTGCTGGGGA 235
Query 234 TTGTTCATTCGGTGAGAGTGGTGTTTCATCTTACTCCAGGAATTCCAATGAAAAGCAGGA 293
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 236 TTGTTCATTCGGTGAGAGTGGCATTTCATCTTACTCCAGGAATTCCAATGAAAAGCAGGA 295
Query 294 CGAGGTTGCCCGCTGGTATTTTGGAAGAAAAGAAATTGAAGAAAATTCACCTTCAAGGTT 353
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 296 CGAGGTTGCCCGCTGGTATTTTGGAAGGAAAGAAATAGAAGAAAATTCACCATCAAGGTT 355
Query 354 GGATAGTATTGACTTAAAGAAGGAAACATACCTCCGCAAGTCATACTGTACATTTTTGCA 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GGATAGTATTGACTTAAAGAAGGAAACATACCTCCGCAAGTCATACTGTACATTTTTGCA 415
Query 414 GGATTTAGGCATGAGATTAAAAGTTCCTCAGGTTACAATAGCTACCGCAATTATCTTCTG 473
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 416 GGACTTAGGCATGAGATTAAAAGTTCCTCAGGTTACAATAGCTACAGCAATAATCTTCTG 475
Query 474 TCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGACGATTGCTACAGT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGACGATTGCTACAGT 535
Query 534 CTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCTAGGCCGTTAAAAGATGTTATTGT 593
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 536 CTGCATGTTCCTTGCTGGAAAAGTTGAAGAAACTCCAAGGCCGTTAAAAGATGTTATTGT 595
Query 594 TGTCTCCTATGAGATAATACACAAGAAGGATCCTACTACTGCACAGAAAATCAAGCAAAA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TGTCTCCTATGAGATAATACACAAGAAGGATCCTACTACTGCACAGAAAATCAAGCAAAA 655
Query 654 GGAAGTATATGAGCAACAAAAAGAGCTTATACTAAATGGAGAAAAGATTGTACTTTCTAC 713
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 656 GGAAGTATATGAGCAACAAAAAGAGCTTATACTAAGTGGAGAAAAGATTGTACTTTCTAC 715
Query 714 GCTGGGATTTGACTTCAATGTTTATCATCCTTATAAGCCTCTTGTAGAAGCGATAAAGAA 773
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 716 GCTGGGGTTTGACTTCAACGTTTATCATCCTTATAAACCTCTTGTAGAAGCGATAAAGAA 775
Query 774 ATTTAAGGTCGCACAGAATGCTCTGGCCCAAGTTGCATGGAATTTTGTTAACGATGGTCT 833
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 ATTCAAGGTCGCACAGAATGCTCTGGCCCAAGTTGCATGGAATTTTGTTAACGATGGTCT 835
Query 834 GCGGACGTCACTCTGCCTGCAATTTAAGCCTCACCACATTGCGGCGGGAGCAATTTTTCT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GCGGACGTCACTCTGCCTGCAATTTAAGCCTCACCACATTGCGGCGGGAGCAATTTTTCT 895
Query 894 TGCTGCGAAGTTCCTTAAAGTGAAATTACCATCAGATGGAGAGAAGGTCTGGTGGCAAGA 953
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 896 TGCTGCGAAGTTCCTTAAAGTGAAATTACCATCAGATGGAGAGAAGGTTTGGTGGCAAGA 955
Query 954 ATTTGATGTCACACCTCGACAACTAGAGGATGTTAGCAACCAAATGCTTGAGCTCTATGA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ATTTGATGTCACACCTCGACAACTAGAGGATGTTAGCAACCAAATGCTTGAGCTCTATGA 1015
Query 1014 GCAAAACCGTGTTCCTGCATCTCAAGTAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGATC 1073
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1016 GCAAAACCGAGTTCCTGCATCTCAAGGAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGATC 1075
Query 1074 AGCTCATCATGTTGGGTCTAGGCCA-T--CAGCACGTCTAACTCATGAACATTCAAATTC 1130
||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||
Sbjct 1076 AGCTCATCATGTTGGGTCTAGGCCAATATCAGCACGTCCAACTCATGAACATTCAAACTC 1135
Query 1131 TGATAATC-TCGGGGGCTCGACAAAAGCTACACAAAACCGGAGCAATGATAATGGGAGTG 1189
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TGATAATCAT-GGGGGCTCTTCAAAAGCTACACAAAACCGGAGCAATGATAATGGGAGTG 1194
Query 1190 GTGAGGCAGGTAGTGTCATCACCGAGCAGAAGGGGGAAAGAGATACAGAAACGAAAGATA 1249
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GTGAGGCAGGTAGTGTCATTACCGAGCAGAAGGGGGAAAGAGATACAGAAACGAAAGATA 1254
Query 1250 GCATGCATACTGAAAGTCATCCAGCCCATAAGTCTAGATCGGGAGTTGAGGCACCTGGGG 1309
|| |||||||||||| |||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct 1255 GCCTGCATACTGAAAATCATCCAGCCCATAAGTCTAGATCAGGAGTTGAAGCATCTGGGG 1314
Query 1310 AGGATAAAATAGAGAAAGCAGGTGCACATTTTCC-AGAAGATGATAAATCTAGAATTGTT 1368
|||| |||| || |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1315 AGGAAAAAACAGCGAAAGCAGGTGCACATTT-CCTAGAAGATGATAAATCTAGAATTGTT 1373
Query 1369 GGTACAGCTGATGTCACGGTCAGCCAATCCCCAAAAGACATAAAAATGTTTAGAGATAAG 1428
||||| | |||| | | |||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1374 GGTACGGGTGATACCCCAGTCAGCCAATCCCCAATAGACATAAAATTGTTTAGAGATAAG 1433
Query 1429 GTGAAGGCCAAACTAGAGGCGAAGAAGGTCCAAGGTGAAAAGACGAG-AAAGAAGGATTT 1487
|||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||
Sbjct 1434 GTGAAGGCCAAACTAGAGGCTAAGAAGGTCCAAGGTGAAAAGACGAGGAAA-AAGGATTT 1492
Query 1488 GGTGGATGAGGATGATTTGATAGAAAGAGAACTGGAAGACGTGGAATTAGCTGTTGAGGA 1547
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1493 GGTGGATGAGGATGATTTGATCGAAAGAGAATTGGAAGACGTGGAATTAGCTGTTGAGGA 1552
Query 1548 TGACAAAGATATACAAAACAAAAGCTCCATGGGTACAGAACATGGCGAGATTCTTGATGG 1607
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1553 TGACAAAGATATACAAAACAAAAGCTCCATGGGTACAGAACACGGCGAGATTCTTGATGG 1612
Query 1608 AAACAACTTGGTGGTCAATACCGAGGAAGGTGAAATGATAGATGATGTTTCTTCAACA-- 1665
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1613 AAACAATTTGGTGGTCAATACCGAGGAAGGTGAAATGGTAGATGATGTTTCTTCAACAGT 1672
Query 1666 ---A-TGCCTAGCCGGAAGAGAAAAATGGAAAGTCCTTGTGAAAAACAGTTAGGAGAAGG 1721
| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1673 GCCAGTGCCTAGCCGGAAGAGAAAAATGGGAAGCCCTTGTGAAAAACAGTTAGGAGAAGG 1732
Query 1722 AAAGAGACGACACGACAACAGTGAGAATGTGGAAGAAGGTCAGAAGACAAACCCAGGAGG 1781
|||||| |||||| |||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 1733 AAAGAGGCGACACAACAACAGTGAGAATGTAGAAGAAGGTCACAAGACAAACCGAGGAGG 1792
Query 1782 AAGTAGTCATAGTTATGGTGACAGAGAGCCAAGAAGACACTCCCAAGAGAGGTAGATGAT 1841
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1793 AAGTAGTCATAGTCATGGTGACCGAGAGCCAAGAAGACACTCCCAAGAGAGGTAGATGAT 1852
Query 1842 CAAAACCTTCTCATGGTCTATTAGAGACATTTCCCAACCATGATGCGAAATGA-GT-CCA 1899
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1853 AAAAACCTTCTCATGGTCTATTAGAGACATTTCCCAACCATGATGCGAAATGATGAGCC- 1911
Query 1900 C-TGTATTTACAATGTTGGTTATCTTTTCATTTTC-----CTTGGCACTTGTATTCAACA 1953
| |||| |||||||||| ||||||||| |||| ||||||||||||||||||||
Sbjct 1912 CGTGTAGTTACAATGTTCATTATCTTTTTTTTTTTTTTTTCTTGGCACTTGTATTCAACA 1971
Query 1954 GTTGAGAAACTAAATCAGGTTTCCATCCATC-----CC----ATAGGATTTAGGGTCTCT 2004
||||||||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct 1972 GTTGAGAAACTAAATCAGGCTTCCATCCATCAGAGACCTCCCATAGGCTTTAGGGTCTCT 2031
Query 2005 ATAATTTTGATCTTTG-TTAGCATTCCCTTT 2034
|||||||||||||||| || |||||||||||
Sbjct 2032 ATAATTTTGATCTTTGCTT-GCATTCCCTTT 2061
> Ahg494461 jgi|Araly1|494461|fgenesh2_kg.8__277__AT5G45190.1
Length=2090
Score = 1110 bits (601), Expect = 0.0
Identities = 789/881 (90%), Gaps = 8/881 (1%)
Strand=Plus/Plus
Query 203 AGATAGC-AATGGCTGGAGTATTAGCTGGGGATTGTTCATT-CGGTGAGAGTGGTGTTTC 260
||||| | ||||||||||||| |||||||||| ||||| || | |||||||||| |||||
Sbjct 155 AGATA-CTAATGGCTGGAGTACTAGCTGGGGAATGTTC-TTACAGTGAGAGTGGAGTTTC 212
Query 261 ATCTTACTCCAGGAATTC-CAATGAAAAGCAGGACGAGGTTGCCCGCTGGTATTTTGGAA 319
||| |||| |||||||| | |||||||||| || |||||| ||||||||||||||||||
Sbjct 213 ATCACACTCGAGGAATTCTC-ATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTGGAA 271
Query 320 GAAAAGAAATTGAAGAAAATTCACCTTCAAGGTTGGATAGTATTGACTTAAAGAAGGAAA 379
|||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||
Sbjct 272 GAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGGAAA 331
Query 380 CATACCTCCGCAAGTCATACTGTACATTTTTGCAGGATTTAGGCATGAGATTAAAAGTTC 439
| ||||||||||| || |||||||| ||||||||||| || ||||||||||| |||||||
Sbjct 332 CGTACCTCCGCAAATCCTACTGTACGTTTTTGCAGGACTTGGGCATGAGATTGAAAGTTC 391
Query 440 CTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCATTCGCCAGTCAC 499
| ||||||||||||||||| || || ||||||||||||||||||||| ||||||| ||||
Sbjct 392 CCCAGGTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCAC 451
Query 500 ATGCTAGGAATGACAGAAGGACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGG 559
|||| | ||||||||||||||| ||||| || || |||||||||||||| ||||| || |
Sbjct 452 ATGCAAAGAATGACAGAAGGACTATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTG 511
Query 560 AAGAAACTCCTA-GGCCGTTAAAAGATGTTATTGTTGTCTCCTATGAGATAATACACAAG 618
| |||||||| | |||| || ||||| |||||| |||||||||||||||||||| |||||
Sbjct 512 AGGAAACTCC-ACGGCCCTTGAAAGACGTTATTTTTGTCTCCTATGAGATAATAAACAAG 570
Query 619 AAGGATCCTACTACTGCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAG 678
||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 AAGGATCCTGGTGCTTCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAG 630
Query 679 CTTATACTAAATGGAGAAAAGATTGTACTTTCTACGCTGGGATTTGACTTCAATGTTTAT 738
|||||| |||| |||||||| ||||| |||||||| | || |||||| |||||||| ||
Sbjct 631 CTTATATTAAACGGAGAAAAAATTGTTCTTTCTACTTTAGGCTTTGACCTCAATGTTCAT 690
Query 739 CATCCTTATAAGCCTCTTGTAGAAGCGATAAAGAAATTTAAGGTCGCACAGAATGCTCTG 798
||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 691 CATCCTTATAAACCCCTTGTAGAAGCTATAAAGAAATTTAAGGTTGCACAGAATGCTCTC 750
Query 799 GCCCAAGTTGCATGGAATTTTGTTAACGATGGTCTGCGGACGTCACTCTGCCTGCAATTT 858
|||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct 751 GCCCAAGTTGCATGGAATTTTGTTAATGATGGTCTTCGGACATCTCTCTGCCTGCAATTT 810
Query 859 AAGCCTCACCACATTGCGGCGGGAGCAATTTTTCTTGCTGCGAAGTTCCTTAAAGTGAAA 918
|||||||| || |||||||| || ||||| |||||||| || |||||||||||||||||
Sbjct 811 AAGCCTCATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAG 870
Query 919 TTACCATCAGATGGAGAGAAGGTCTGGTGGCAAGAATTTGATGTCACACCTCGACAACTA 978
|||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||| |
Sbjct 871 TTACCATCAGATGGGGAGAAGGTTTGGTGGCAAGAATTTGACGTCACACCCCGACAATTG 930
Query 979 GAGGATGTTAGCAACCAAATGCTTGAGCTCTATGAGCAAAACCGTGTTCCTGCATCTCAA 1038
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 931 GAGGATGTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAACCGTGTCCCTGCATCTCAA 990
Query 1039 GTAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGATCAGCTCA 1079
| |||||||||||||||||||||||||||||| |||| |||
Sbjct 991 GGAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGGTCAGTTCA 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76675663185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5