BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19600.1 Length=2039 Score E Sequences producing significant alignments: (Bits) Value Ahg492906 jgi|Araly1|492906|fgenesh2_kg.7__2339__AT4G19600.1 3066 0.0 Ahg494461 jgi|Araly1|494461|fgenesh2_kg.8__277__AT5G45190.1 1110 0.0 > Ahg492906 jgi|Araly1|492906|fgenesh2_kg.7__2339__AT4G19600.1 Length=2061 Score = 3066 bits (1660), Expect = 0.0 Identities = 1942/2071 (94%), Gaps = 47/2071 (2%) Strand=Plus/Plus Query 1 GTTCTTTCCTTTCTCGCGTTTCTTCTCCTAGGGTTAGGGTTCGACGAACGCAGCTGTTCC 60 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 GTTCTTTCCTTTCTCGCGTTTCTTCT-CTAGGGTTAGGGTTCGACGAACGCAGCTGTTCT 59 Query 61 ACGCGTTTAGTTTCAATTCTCCATCGAAGAAGCCATAATCCGATTCCTAAAGAGCTTACA 120 |||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||| Sbjct 60 ACGCGTTTAGCTTCAATTCGCCATTGAAGAAGCCATAATCTGATTCCTAAAGAGCTTACA 119 Query 121 TTTGTTACTCAACTTTAAAGTTTTGACGCTAGAGATTACTATCCTCTTG-C--TGGGAAC 177 |||| || |||||| ||||||||||||||||||||||| ||||| ||| | | || | Sbjct 120 TTTGATATTCAACTATAAAGTTTTGACGCTAGAGATTAAGATCCTATTGCCAGTAGGTA- 178 Query 178 TCA-ACGTGACCAGACTGTGTTTGAAAGATAGCAATGGCTGGAGTATTA---GCTGGGGA 233 ||| || | ||||| |||| ||||||||| ||||||||||||||||| |||||||| Sbjct 179 TCATAC-T--TCAGACCGTGTGTGAAAGATACCAATGGCTGGAGTATTAGCTGCTGGGGA 235 Query 234 TTGTTCATTCGGTGAGAGTGGTGTTTCATCTTACTCCAGGAATTCCAATGAAAAGCAGGA 293 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 236 TTGTTCATTCGGTGAGAGTGGCATTTCATCTTACTCCAGGAATTCCAATGAAAAGCAGGA 295 Query 294 CGAGGTTGCCCGCTGGTATTTTGGAAGAAAAGAAATTGAAGAAAATTCACCTTCAAGGTT 353 ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| Sbjct 296 CGAGGTTGCCCGCTGGTATTTTGGAAGGAAAGAAATAGAAGAAAATTCACCATCAAGGTT 355 Query 354 GGATAGTATTGACTTAAAGAAGGAAACATACCTCCGCAAGTCATACTGTACATTTTTGCA 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 GGATAGTATTGACTTAAAGAAGGAAACATACCTCCGCAAGTCATACTGTACATTTTTGCA 415 Query 414 GGATTTAGGCATGAGATTAAAAGTTCCTCAGGTTACAATAGCTACCGCAATTATCTTCTG 473 ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 416 GGACTTAGGCATGAGATTAAAAGTTCCTCAGGTTACAATAGCTACAGCAATAATCTTCTG 475 Query 474 TCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGACGATTGCTACAGT 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 TCATCGATTCTTCATTCGCCAGTCACATGCTAGGAATGACAGAAGGACGATTGCTACAGT 535 Query 534 CTGCATGTTCCTTGCGGGAAAAGTGGAAGAAACTCCTAGGCCGTTAAAAGATGTTATTGT 593 ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 536 CTGCATGTTCCTTGCTGGAAAAGTTGAAGAAACTCCAAGGCCGTTAAAAGATGTTATTGT 595 Query 594 TGTCTCCTATGAGATAATACACAAGAAGGATCCTACTACTGCACAGAAAATCAAGCAAAA 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 TGTCTCCTATGAGATAATACACAAGAAGGATCCTACTACTGCACAGAAAATCAAGCAAAA 655 Query 654 GGAAGTATATGAGCAACAAAAAGAGCTTATACTAAATGGAGAAAAGATTGTACTTTCTAC 713 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 656 GGAAGTATATGAGCAACAAAAAGAGCTTATACTAAGTGGAGAAAAGATTGTACTTTCTAC 715 Query 714 GCTGGGATTTGACTTCAATGTTTATCATCCTTATAAGCCTCTTGTAGAAGCGATAAAGAA 773 |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 716 GCTGGGGTTTGACTTCAACGTTTATCATCCTTATAAACCTCTTGTAGAAGCGATAAAGAA 775 Query 774 ATTTAAGGTCGCACAGAATGCTCTGGCCCAAGTTGCATGGAATTTTGTTAACGATGGTCT 833 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 ATTCAAGGTCGCACAGAATGCTCTGGCCCAAGTTGCATGGAATTTTGTTAACGATGGTCT 835 Query 834 GCGGACGTCACTCTGCCTGCAATTTAAGCCTCACCACATTGCGGCGGGAGCAATTTTTCT 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 GCGGACGTCACTCTGCCTGCAATTTAAGCCTCACCACATTGCGGCGGGAGCAATTTTTCT 895 Query 894 TGCTGCGAAGTTCCTTAAAGTGAAATTACCATCAGATGGAGAGAAGGTCTGGTGGCAAGA 953 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 896 TGCTGCGAAGTTCCTTAAAGTGAAATTACCATCAGATGGAGAGAAGGTTTGGTGGCAAGA 955 Query 954 ATTTGATGTCACACCTCGACAACTAGAGGATGTTAGCAACCAAATGCTTGAGCTCTATGA 1013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 ATTTGATGTCACACCTCGACAACTAGAGGATGTTAGCAACCAAATGCTTGAGCTCTATGA 1015 Query 1014 GCAAAACCGTGTTCCTGCATCTCAAGTAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGATC 1073 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1016 GCAAAACCGAGTTCCTGCATCTCAAGGAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGATC 1075 Query 1074 AGCTCATCATGTTGGGTCTAGGCCA-T--CAGCACGTCTAACTCATGAACATTCAAATTC 1130 ||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| || Sbjct 1076 AGCTCATCATGTTGGGTCTAGGCCAATATCAGCACGTCCAACTCATGAACATTCAAACTC 1135 Query 1131 TGATAATC-TCGGGGGCTCGACAAAAGCTACACAAAACCGGAGCAATGATAATGGGAGTG 1189 |||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1136 TGATAATCAT-GGGGGCTCTTCAAAAGCTACACAAAACCGGAGCAATGATAATGGGAGTG 1194 Query 1190 GTGAGGCAGGTAGTGTCATCACCGAGCAGAAGGGGGAAAGAGATACAGAAACGAAAGATA 1249 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1195 GTGAGGCAGGTAGTGTCATTACCGAGCAGAAGGGGGAAAGAGATACAGAAACGAAAGATA 1254 Query 1250 GCATGCATACTGAAAGTCATCCAGCCCATAAGTCTAGATCGGGAGTTGAGGCACCTGGGG 1309 || |||||||||||| |||||||||||||||||||||||| |||||||| ||| |||||| Sbjct 1255 GCCTGCATACTGAAAATCATCCAGCCCATAAGTCTAGATCAGGAGTTGAAGCATCTGGGG 1314 Query 1310 AGGATAAAATAGAGAAAGCAGGTGCACATTTTCC-AGAAGATGATAAATCTAGAATTGTT 1368 |||| |||| || |||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1315 AGGAAAAAACAGCGAAAGCAGGTGCACATTT-CCTAGAAGATGATAAATCTAGAATTGTT 1373 Query 1369 GGTACAGCTGATGTCACGGTCAGCCAATCCCCAAAAGACATAAAAATGTTTAGAGATAAG 1428 ||||| | |||| | | |||||||||||||||| |||||||||| |||||||||||||| Sbjct 1374 GGTACGGGTGATACCCCAGTCAGCCAATCCCCAATAGACATAAAATTGTTTAGAGATAAG 1433 Query 1429 GTGAAGGCCAAACTAGAGGCGAAGAAGGTCCAAGGTGAAAAGACGAG-AAAGAAGGATTT 1487 |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| Sbjct 1434 GTGAAGGCCAAACTAGAGGCTAAGAAGGTCCAAGGTGAAAAGACGAGGAAA-AAGGATTT 1492 Query 1488 GGTGGATGAGGATGATTTGATAGAAAGAGAACTGGAAGACGTGGAATTAGCTGTTGAGGA 1547 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 1493 GGTGGATGAGGATGATTTGATCGAAAGAGAATTGGAAGACGTGGAATTAGCTGTTGAGGA 1552 Query 1548 TGACAAAGATATACAAAACAAAAGCTCCATGGGTACAGAACATGGCGAGATTCTTGATGG 1607 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1553 TGACAAAGATATACAAAACAAAAGCTCCATGGGTACAGAACACGGCGAGATTCTTGATGG 1612 Query 1608 AAACAACTTGGTGGTCAATACCGAGGAAGGTGAAATGATAGATGATGTTTCTTCAACA-- 1665 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1613 AAACAATTTGGTGGTCAATACCGAGGAAGGTGAAATGGTAGATGATGTTTCTTCAACAGT 1672 Query 1666 ---A-TGCCTAGCCGGAAGAGAAAAATGGAAAGTCCTTGTGAAAAACAGTTAGGAGAAGG 1721 | |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 1673 GCCAGTGCCTAGCCGGAAGAGAAAAATGGGAAGCCCTTGTGAAAAACAGTTAGGAGAAGG 1732 Query 1722 AAAGAGACGACACGACAACAGTGAGAATGTGGAAGAAGGTCAGAAGACAAACCCAGGAGG 1781 |||||| |||||| |||||||||||||||| ||||||||||| |||||||||| |||||| Sbjct 1733 AAAGAGGCGACACAACAACAGTGAGAATGTAGAAGAAGGTCACAAGACAAACCGAGGAGG 1792 Query 1782 AAGTAGTCATAGTTATGGTGACAGAGAGCCAAGAAGACACTCCCAAGAGAGGTAGATGAT 1841 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1793 AAGTAGTCATAGTCATGGTGACCGAGAGCCAAGAAGACACTCCCAAGAGAGGTAGATGAT 1852 Query 1842 CAAAACCTTCTCATGGTCTATTAGAGACATTTCCCAACCATGATGCGAAATGA-GT-CCA 1899 |||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1853 AAAAACCTTCTCATGGTCTATTAGAGACATTTCCCAACCATGATGCGAAATGATGAGCC- 1911 Query 1900 C-TGTATTTACAATGTTGGTTATCTTTTCATTTTC-----CTTGGCACTTGTATTCAACA 1953 | |||| |||||||||| ||||||||| |||| |||||||||||||||||||| Sbjct 1912 CGTGTAGTTACAATGTTCATTATCTTTTTTTTTTTTTTTTCTTGGCACTTGTATTCAACA 1971 Query 1954 GTTGAGAAACTAAATCAGGTTTCCATCCATC-----CC----ATAGGATTTAGGGTCTCT 2004 ||||||||||||||||||| ||||||||||| || ||||| |||||||||||| Sbjct 1972 GTTGAGAAACTAAATCAGGCTTCCATCCATCAGAGACCTCCCATAGGCTTTAGGGTCTCT 2031 Query 2005 ATAATTTTGATCTTTG-TTAGCATTCCCTTT 2034 |||||||||||||||| || ||||||||||| Sbjct 2032 ATAATTTTGATCTTTGCTT-GCATTCCCTTT 2061 > Ahg494461 jgi|Araly1|494461|fgenesh2_kg.8__277__AT5G45190.1 Length=2090 Score = 1110 bits (601), Expect = 0.0 Identities = 789/881 (90%), Gaps = 8/881 (1%) Strand=Plus/Plus Query 203 AGATAGC-AATGGCTGGAGTATTAGCTGGGGATTGTTCATT-CGGTGAGAGTGGTGTTTC 260 ||||| | ||||||||||||| |||||||||| ||||| || | |||||||||| ||||| Sbjct 155 AGATA-CTAATGGCTGGAGTACTAGCTGGGGAATGTTC-TTACAGTGAGAGTGGAGTTTC 212 Query 261 ATCTTACTCCAGGAATTC-CAATGAAAAGCAGGACGAGGTTGCCCGCTGGTATTTTGGAA 319 ||| |||| |||||||| | |||||||||| || |||||| |||||||||||||||||| Sbjct 213 ATCACACTCGAGGAATTCTC-ATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTGGAA 271 Query 320 GAAAAGAAATTGAAGAAAATTCACCTTCAAGGTTGGATAGTATTGACTTAAAGAAGGAAA 379 |||||||||| ||||| |||||||| |||||||||||| ||||||||||||||||||||| Sbjct 272 GAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGGAAA 331 Query 380 CATACCTCCGCAAGTCATACTGTACATTTTTGCAGGATTTAGGCATGAGATTAAAAGTTC 439 | ||||||||||| || |||||||| ||||||||||| || ||||||||||| ||||||| Sbjct 332 CGTACCTCCGCAAATCCTACTGTACGTTTTTGCAGGACTTGGGCATGAGATTGAAAGTTC 391 Query 440 CTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCATTCGCCAGTCAC 499 | ||||||||||||||||| || || ||||||||||||||||||||| ||||||| |||| Sbjct 392 CCCAGGTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCAC 451 Query 500 ATGCTAGGAATGACAGAAGGACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGG 559 |||| | ||||||||||||||| ||||| || || |||||||||||||| ||||| || | Sbjct 452 ATGCAAAGAATGACAGAAGGACTATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTG 511 Query 560 AAGAAACTCCTA-GGCCGTTAAAAGATGTTATTGTTGTCTCCTATGAGATAATACACAAG 618 | |||||||| | |||| || ||||| |||||| |||||||||||||||||||| ||||| Sbjct 512 AGGAAACTCC-ACGGCCCTTGAAAGACGTTATTTTTGTCTCCTATGAGATAATAAACAAG 570 Query 619 AAGGATCCTACTACTGCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAG 678 ||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 571 AAGGATCCTGGTGCTTCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAG 630 Query 679 CTTATACTAAATGGAGAAAAGATTGTACTTTCTACGCTGGGATTTGACTTCAATGTTTAT 738 |||||| |||| |||||||| ||||| |||||||| | || |||||| |||||||| || Sbjct 631 CTTATATTAAACGGAGAAAAAATTGTTCTTTCTACTTTAGGCTTTGACCTCAATGTTCAT 690 Query 739 CATCCTTATAAGCCTCTTGTAGAAGCGATAAAGAAATTTAAGGTCGCACAGAATGCTCTG 798 ||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 691 CATCCTTATAAACCCCTTGTAGAAGCTATAAAGAAATTTAAGGTTGCACAGAATGCTCTC 750 Query 799 GCCCAAGTTGCATGGAATTTTGTTAACGATGGTCTGCGGACGTCACTCTGCCTGCAATTT 858 |||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||| Sbjct 751 GCCCAAGTTGCATGGAATTTTGTTAATGATGGTCTTCGGACATCTCTCTGCCTGCAATTT 810 Query 859 AAGCCTCACCACATTGCGGCGGGAGCAATTTTTCTTGCTGCGAAGTTCCTTAAAGTGAAA 918 |||||||| || |||||||| || ||||| |||||||| || ||||||||||||||||| Sbjct 811 AAGCCTCATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAG 870 Query 919 TTACCATCAGATGGAGAGAAGGTCTGGTGGCAAGAATTTGATGTCACACCTCGACAACTA 978 |||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||| | Sbjct 871 TTACCATCAGATGGGGAGAAGGTTTGGTGGCAAGAATTTGACGTCACACCCCGACAATTG 930 Query 979 GAGGATGTTAGCAACCAAATGCTTGAGCTCTATGAGCAAAACCGTGTTCCTGCATCTCAA 1038 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 931 GAGGATGTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAACCGTGTCCCTGCATCTCAA 990 Query 1039 GTAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGATCAGCTCA 1079 | |||||||||||||||||||||||||||||| |||| ||| Sbjct 991 GGAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGGTCAGTTCA 1031 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76675663185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5