BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19640.1 Length=1014 Score E Sequences producing significant alignments: (Bits) Value Ahg492904 jgi|Araly1|492904|fgenesh2_kg.7__2337__AT4G19640.1 1245 0.0 Ahg494466 jgi|Araly1|494466|fgenesh2_kg.8__282__AT5G45130.1 734 0.0 Ahg907926 jgi|Araly1|907926|Al_scaffold_0002_1007 693 0.0 Ahg915023 jgi|Araly1|915023|Al_scaffold_0001_5277 689 0.0 Ahg911297 jgi|Araly1|911297|Al_scaffold_0001_1551 676 0.0 Ahg326708 jgi|Araly1|326708|fgenesh1_pm.C_scaffold_6001928 291 9e-78 > Ahg492904 jgi|Araly1|492904|fgenesh2_kg.7__2337__AT4G19640.1 Length=955 Score = 1245 bits (674), Expect = 0.0 Identities = 862/944 (91%), Gaps = 47/944 (5%) Strand=Plus/Plus Query 83 TGTCTCCGTCGTCTTTTGATCTTCAATCTCAGTTTTGAGCTGAAGATTATCGTATCGACC 142 |||||||||| ||||||||||||||||||||||||||||||||||||||||| | | Sbjct 43 TGTCTCCGTCTTCTTTTGATCTTCAATCTCAGTTTTGAGCTGAAGATTATCG----G-CA 97 Query 143 TGCGATTCTCTTCAGATCGATAATCCATGGCTGCAGCTGGAAACAAGAGCATTAACGCCA 202 | |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 98 TCCGATTCTCTTCAGATCCATAAT-CATGGCTGCAGCTGGAAACAAGAGCATTAACGCCA 156 Query 203 AATTGGTGTTGCTTGGAGATGTTGGTGCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCA 262 |||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 157 AATTGGTGTTACTTGGAGATGTTGGAGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCA 216 Query 263 AAGATCAGTTTGTTGAATTCCAGGAATCAACCATTGGTGCTGCTTTTTTCTCACAAACGT 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 217 AAGATCAGTTTGTTGAATTCCAGGAATCAACCATTGGTGCTGCTTTTTTCTCACAAACAT 276 Query 323 TAGCTGTGAACGATGCCACTGTGAAGTTTGAGATTTGGGATACAGCGGGTCAGGAACGGT 382 ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 277 TAGCTGTCAACGATGCTACTGTCAAGTTTGAGATTTGGGATACAGCGGGTCAGGAACGGT 336 Query 383 ACCATAGTTTGGCTCCAATGTACTACAGAGGTGCTGCTGCTGCAATCATTGTTTTTGATG 442 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 337 ACCATAGTTTGGCTCCAATGTACTACAGGGGTGCTGCTGCTGCAATCATTGTCTTTGATG 396 Query 443 TTACGAATCAGGCTTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAG 502 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 397 TTACGAATCAGGCCTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAG 456 Query 503 GTAACCCTAATATGGTCATGGCCCTTGCTGGAAACAAATCTGATTTATTAGATGCAAGGA 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 457 GTAACCCTAATATGGTCATGGCCCTTGCTGGAAACAAATCTGATTTATTAGATGCAAGGA 516 Query 563 AGGTGACAGCAGAGGATGCACAAACATATGCTCAGGAAAACGGTCTTTTCTTCATGGAAA 622 ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 517 AGGTGACTGCAGAGGAGGCACAAACATATGCTCAAGAAAACGGTCTTTTCTTCATGGAAA 576 Query 623 CTTCAGCAAAAACCGCTACTAATGTCAAAGAGATATTCTATGAAATCGCAAGAAGGCTAC 682 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 577 CATCAGCAAAAACCGCCACTAATGTCAAAGAGATATTCTATGAAATCGCAAGAAGGCTAC 636 Query 683 CGCGAGTACAGCCAACAGAAAACCCAACAGGAATGGTTCTGCCAGACAGGGCCATGGATA 742 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 637 CGCGAGTACAGCCAACAGAAAACCCAACAGGAATGGTTCTCCCAGACAGGGCCATGGATA 696 Query 743 GGGCAGTGAGCTCATCTTGTTGTGCTTAGTTATATTGTGTAATGGCACACACTTCTCTTA 802 ||||||||||||||||||||||||||||||||||| | | || | | Sbjct 697 GGGCAGTGAGCTCATCTTGTTGTGCTTAGTTATAT----------C------T-CT-T-A 737 Query 803 AAAAGAGATCTTTTGGTCA----CTTTA-AAGTTATGGACTTCTGTGTTTGCGTCTCTTT 857 |||||| |||||||||||| |||| ||||||||||||||||||||||||| ||||| Sbjct 738 AAAAGAAATCTTTTGGTCAGTGACTTTTGAAGTTATGGACTTCTGTGTTTGCGTTTCTTT 797 Query 858 GCTTTGTTTTACGTATTTGAGATTTGATCTCCACTATTTTGTAAATAAATCTAATACTCA 917 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 798 GCTTTGTTTTGCGTATTTGAGATTTGATCTCCACTCTTTTGTAAATAAATCTAATACTCA 857 Query 918 A-C-T-AAGTAA-CTAAGTG-CGTGAGGGGGCTATGGATCCATTTGTCATAACGCAAATA 972 | | || || | |||| | | | ||||||||||| ||||| |||| |||||| Sbjct 858 TGCGTGAA--AAGC-AAGTTTC-T-ATAAATCTATGGATCCAGTTGTCTTAACACAAATA 912 Query 973 TTTTCAAGTTATAGAA--A----CTCTAAAATAAACTCAAACAT 1010 ||| |||||||||||| | ||||||||||||||||||||| Sbjct 913 TTT-CAAGTTATAGAATTAGAAACTCTAAAATAAACTCAAACAT 955 Score = 78.7 bits (42), Expect = 8e-14 Identities = 42/42 (100%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 17 GAGGAGGAGGAGATTGGTTGTTGTTGACGACGCGTTTCCGCT 58 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAGGAGGAGGAGATTGGTTGTTGTTGACGACGCGTTTCCGCT 42 > Ahg494466 jgi|Araly1|494466|fgenesh2_kg.8__282__AT5G45130.1 Length=1068 Score = 734 bits (397), Expect = 0.0 Identities = 549/623 (88%), Gaps = 8/623 (1%) Strand=Plus/Plus Query 154 TCAGATCGATAATCCATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTT 212 ||| ||| || || ||||||| || |||||||||||| ||| ||||||||||||||||| Sbjct 176 TCA-ATCAATCAT-CATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTGTT 232 Query 213 GCTTGGAGATGTTGGTGCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTT 272 || ||||||||||| ||||||||||||||||||||| | || ||||| ||||||||||| Sbjct 233 ACTAGGAGATGTTGGGGCTGGAAAATCAAGTCTTGTGCTGCGTTTTGTTAAAGATCAGTT 292 Query 273 TGTTGAATTCCAGGAATCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAA 332 |||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||| Sbjct 293 TGTTGAATTCCAGGAATCAACCATAGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAA 352 Query 333 CGATGCCACTGTGAAGTTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTT 392 ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| || Sbjct 353 TGATGCGACTGTGAAGTTTGAGATATGGGATACAGCTGGTCAGGAACGGTACCATAGCTT 412 Query 393 GGCTCCAATGTACTACAGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCA 452 |||||||||||||||||| ||||| |||||||| || ||||| ||||| |||| ||||| Sbjct 413 GGCTCCAATGTACTACAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACAAATCA 472 Query 453 GGCTTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAA 512 || || ||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 473 AGCGTCATTTGAGAGGGCGAAGAAATGGGTTCAAGAACTGCAGGCACAAGGTAACCCTAA 532 Query 513 TATGGTCATGGCCCTTGCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACAGC 572 |||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| | || Sbjct 533 TATGGTGATGGCTCTTGCTGGAAACAAAGCTGATTTATTAGATGCAAGGAAGGTGTCTGC 592 Query 573 AGAGGATGCACAAACATATGCTCAGGAAAACGGTCTTTTCTTCATGGAAACTTCAGCAAA 632 |||||| ||| | | ||||||||| || ||| | ||||||||||||||||| ||||| || Sbjct 593 AGAGGAGGCAGAGATATATGCTCAAGAGAACAGCCTTTTCTTCATGGAAACCTCAGCGAA 652 Query 633 AACCGCTACTAATGTCAAAGAGATATTCTATGAAATCGC-AAGAAGGCTACCGCGAGTAC 691 ||||| || ||||||||||| |||||||| |||||||| || |||||||||||| |||| Sbjct 653 GACCGCAACAAATGTCAAAGACATATTCTACGAAATCGCGAA-AAGGCTACCGCGTGTAC 711 Query 692 AGCCAACAGAAAACCCAACAGGAATGGTTCTGCCAGACAGGGCCATGGA-TAGGGCAGTG 750 ||||| | ||||||||||||||||||||||| ||| || |||||| || || |||||| Sbjct 712 AGCCAGCTGAAAACCCAACAGGAATGGTTCTCCCAAAC-GGGCCAGGGGCTACAGCAGTG 770 Query 751 AGCTCATCTTGTTGTGCTTAGTT 773 || ||||| |||||||||||||| Sbjct 771 AGTTCATCGTGTTGTGCTTAGTT 793 > Ahg907926 jgi|Araly1|907926|Al_scaffold_0002_1007 Length=435 Score = 693 bits (375), Expect = 0.0 Identities = 389/396 (98%), Gaps = 0/396 (0%) Strand=Plus/Plus Query 169 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGT 228 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGGA 60 Query 229 GCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 288 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 GCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 120 Query 289 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTGTGAAG 348 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 121 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTCAACGATGCAACTGTCAAG 180 Query 349 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 240 Query 409 AGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCTTCGTTTGAGAGG 468 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 241 AGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCCTCGTTTGAGAGG 300 Query 469 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 360 Query 529 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 564 |||||||||||||||||||||||||||||||||||| Sbjct 361 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 396 > Ahg915023 jgi|Araly1|915023|Al_scaffold_0001_5277 Length=441 Score = 689 bits (373), Expect = 0.0 Identities = 395/406 (97%), Gaps = 0/406 (0%) Strand=Plus/Plus Query 169 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGT 228 ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 1 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAATTTGGTGTTACTTGGAGATGTTGGA 60 Query 229 GCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 288 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 GCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 120 Query 289 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTGTGAAG 348 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 121 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTCAACGATGCAACTGTCAAG 180 Query 349 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 240 Query 409 AGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCTTCGTTTGAGAGG 468 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 241 AGAGGTGCTGCTGCTGCAATCATTGTCTTTGATGTTACGAATCAGGCCTCGTTTGAGAGG 300 Query 469 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 528 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 301 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGATAACCCTAATATGGTCATGGCCCTT 360 Query 529 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACAGCAG 574 ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 361 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACTGCAG 406 > Ahg911297 jgi|Araly1|911297|Al_scaffold_0001_1551 Length=435 Score = 676 bits (366), Expect = 0.0 Identities = 386/396 (97%), Gaps = 0/396 (0%) Strand=Plus/Plus Query 169 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGT 228 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGGA 60 Query 229 GCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 288 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 GCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 120 Query 289 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTGTGAAG 348 ||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||| Sbjct 121 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTATCAACGATGCAACTGTCAAG 180 Query 349 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC 240 Query 409 AGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCTTCGTTTGAGAGG 468 ||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 241 AGAGGTGTTGCTGCTGCAATCATTGTCTTTGATGTTACGAATCAGGCCTCGTTTGAGAGG 300 Query 469 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT 360 Query 529 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 564 |||||||||||||||||||||||||||||||||||| Sbjct 361 GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG 396 > Ahg326708 jgi|Araly1|326708|fgenesh1_pm.C_scaffold_6001928 Length=312 Score = 291 bits (157), Expect = 9e-78 Identities = 169/175 (97%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 169 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGT 228 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGGA 60 Query 229 GCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 288 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 GCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA 120 Query 289 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTG 343 ||||||||||||||||||||||||||||||||||||||| | |||||||| |||| Sbjct 121 TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTATCAACGATGCAACTG 175 Score = 224 bits (121), Expect = 9e-58 Identities = 127/130 (98%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 376 GAACGGTACCATAGTTTGGCTCCAATGTACTACAGAGGTGCTGCTGCTGCAATCATTGTT 435 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 175 GAACGGTACCATAGTTTGGCTCCAATGTACTACAGAGGTGTTGCTGCTGCAATCATTGTC 234 Query 436 TTTGATGTTACGAATCAGGCTTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAG 495 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 235 TTTGATGTTACGAATCAGGCCTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAG 294 Query 496 GCACAAGGTA 505 |||||||||| Sbjct 295 GCACAAGGTA 304 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37703564913 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5