BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19670.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492898 jgi|Araly1|492898|fgenesh2_kg.7__2331__AT4G19670.2 2789 0.0
> Ahg492898 jgi|Araly1|492898|fgenesh2_kg.7__2331__AT4G19670.2
Length=1984
Score = 2789 bits (1510), Expect = 0.0
Identities = 1717/1817 (94%), Gaps = 13/1817 (1%)
Strand=Plus/Plus
Query 28 GATCCGATATGGGTTT-CATTGGTGTGTTGCTAAGTTAAGAAAGTTTGTACCTTTTTGTA 86
|||||||| ||||||| | || || |||||||||||||||||||||||||||||||||||
Sbjct 175 GATCCGATTTGGGTTTGC-TTAGTTTGTTGCTAAGTTAAGAAAGTTTGTACCTTTTTGTA 233
Query 87 GTTTAGATAGGTTTGTTTCCAGACATGGAAAATCAAGAGGATTCTTGTGAATGTGAGGAG 146
|||||| | || ||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 234 GTTTAG-TTGGGTTGTTGCCAAACATGGAAAATCAAGAGGATTCTTGTGGATGTGAGGAG 292
Query 147 CTTCCATTGAATCACT-TAGGAGATGAGGAAGAGTTTAGAAGTTGTTGTGGTGATGAAGA 205
|||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 293 CTTCCATTGAATCA-TATAGGAGATGAGGAAGAGTTTAGAAGCTGTTGTGGTGATGAAGA 351
Query 206 ACTTTGGTTAAAGG-GTAGTGATGATATAGCTAAAGTTGTAGAGGAGGAGAAAAAAGATG 264
| |||||||||||| | |||||||||| || |||||||| ||||||||||||||||||||
Sbjct 352 AGTTTGGTTAAAGGAG-AGTGATGATACAGTTAAAGTTGCAGAGGAGGAGAAAAAAGATG 410
Query 265 ATCTTGATGATGAGTTCTCTGTTAAGATGGTCTTTAAAGGAGTCTCGATATTCGAAAGAG 324
| |||||||||||||||||||||||| | ||||||||||||| ||||||| ||||| ||
Sbjct 411 AACTTGATGATGAGTTCTCTGTTAAGGTTTTCTTTAAAGGAGTTTCGATATCCGAAAAAG 470
Query 325 GAGATTTGGGTTCTGGTTATTCGGGAATTGGTGTTGTGTTGGAGAGGTCAGGAGATTTGG 384
|||||| |||||| ||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 471 GAGATTCGGGTTCCGGTTACTCGGGAATTGGTGTTGTGTTGGAGAGATCTGGAGATTTTG 530
Query 385 AGTTGATTCAGGTTCAGAAGAAGTTGGATTTTTATGTC-GAAGAGTCTGTAGCTAACTAT 443
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 531 AGTTGATTCAGGTTCAGAAGAAGTTGGATTTTTATG-CTGAAGAGTCTGTAGCTAACTAT 589
Query 444 TTAGCTCTTATGGATGGTCTTGAAGTAGCTTTACAGAACAATCTCAGCTCTGTGGTTGCT 503
|| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 590 TTGGCTCTTATGGATGGTCTTGAAGTAGCTTTACAGAATAATCTCCCCTCTGTGGTTGCT 649
Query 504 GTAACCGACTCCGAGTTGCTCTATAATCAGATAACTCGTGAGGAGCAGCTCGAGATCCCT 563
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GTAACCGACTCCGAATTGCTCTATAATCAGATAACTCGTGAGGAGCAGCTCGAGATCCCT 709
Query 564 CTTTTAGTAGCTCTGAGAGAAAGGGTATTGGAGAAAACAAGTAACCTTAATGGGTTTGTT 623
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 710 CTTTTGGTAGCTCTGAGAGAAAGGGTATTGGAGAAAACAAGTAACCTTGATGGGTTTGTT 769
Query 624 CTAAAGCTTGCTCCTTTCTGTGATCTTGATGAAGCTCTAAGCTTGGCTCAAGTAGCGGTA 683
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 770 CTAAAGCTTGCTCCTTTCTGTGATCTCGATGAAGCTCTAAGCTTGGCTCAAGTAGCGGTA 829
Query 684 GGAATCGTGTCTTCTAATCTTGATGGGGATAAACCGATCGAGAACTGCTCGATCTGCTGT 743
|||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 830 GGAATCGTGTCTTCTAATCTCGATGGGGATAAACCAACCGAGAACTGCTCGATCTGCTGT 889
Query 744 GAAGACCGTCAGTCTGAGATGATGCTATCATTGAAATGCACTCACAAATTCTGTTCGCAC 803
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 890 GAAGACCGTCAGTCTGAGATGATGCTAACATTGAAGTGCACTCACAAATTCTGTTCGCAC 949
Query 804 TGCATGAAAACGTACGTTGAAGGGAAAGTAAAGACTTCAGAGGTTCCCATCAGGTGTCCT 863
|| |||||||| || || ||||||||| || || |||| || ||||||||||||||||||
Sbjct 950 TGTATGAAAACATATGTCGAAGGGAAACTACAGTCTTCGGAAGTTCCCATCAGGTGTCCT 1009
Query 864 CAAGTGCAATGCAAGCATTATCTCTCAG-CAGCGGAATGCAAATCGTTCCTTCCCGTCAC 922
|||||||||||||||||||||||||||| || | |||||||||||||| || ||||| |
Sbjct 1010 CAAGTGCAATGCAAGCATTATCTCTCAGCCA-CAGAATGCAAATCGTTTCTGCCCGTTGC 1068
Query 923 TACTTTCAAATCATTCGAGGAAGCAAATGTGTGTAGTAAAAACAATGGGAAGATTTACTG 982
||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 1069 TACTTTCAAATCATTCGAGGAAGCAAATGTGCGTAGTAAGAACAATGGCAAGATTTACTG 1128
Query 983 CCCATATCCCAATTGCTCTTTTCTGTTAGACCCGCAAGAATGTCTATCATCAGGAAGGGC 1042
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1129 CCCATATCCCAATTGCACTTTTCTATTAGACCCGCAAGAATGTCTATCATCAGGAAGGGC 1188
Query 1043 TAGCTCAAGCTCGTCTACTCAGTCAGAGAATAGCTGCtgtgtggagtgtccagtctgtga 1102
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1189 AAGCTCAAGCTCGTCTACTCAGTCAGAGAATAGCTGCTGTGTGGAGTGTCCGGTCTGTGA 1248
Query 1103 gaggtttgtgtgtgtggactgtggtgtTCCTTGGCATGCTTCTATGAGCTGTGAAGAGTT 1162
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GAGGTTTGTTTGTGTAGACTGTGGTGTTCCTTGGCATGCTTCTATGAGCTGTGAAGAGTT 1308
Query 1163 TCAGATTCTTCCAGTTGATGAAAGATACCCAGATGATATTACATTGCATCGCTTGGCAAG 1222
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1309 TCAGATTCTTCCGGTTGATGAAAGATATCCAGATGATATTACATTGCATCGCTTGGCAAG 1368
Query 1223 GTATAAGAGGTGGAGGCGGTGTCAGCAATGCCGTATAATGATCGAGCTTGCTCAAGGCTG 1282
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 GTATAAGAGGTGGAGACGATGTCAGCAATGCCGTATAATGATCGAGCTTGCTCAAGGCTG 1428
Query 1283 CAACCACATGACTTGCCGATGCGGGCATGAGTTTTGCTACTCGTGTGGAGCAGAGTACAG 1342
|||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 1429 CAACCACATGACTTGCCGGTGCGGGCACGAGTTTTGCTACTCGTGTGGAGTAGAGTACAG 1488
Query 1343 AGAAGGGCAACAGACTTGCACGTGTGCTTTTTGGGACGATGATGAAGAAGAACAAGAAAA 1402
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 1489 AGAAGGGCAACAGACTTGCACTTGTGCTTTTTGGGACGATGACGAAGAAGATCAAGAAAA 1548
Query 1403 CGCAGTAGAGGAAAACACAATTCAAGAAGTTGAGCAATGGCCTTGGGACACATTTAACTC 1462
| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CTCAGTTGAGGAACACACAATTCAAGAAGTTGAGCAATGGCCTTGGGACACATTTAACTC 1608
Query 1463 AATTCCAACTGTAATGGACGCGTACTCAGAGCAAGAAAGATCTCAGCTTGCTCTGATCCA 1522
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1609 AATTCCAACTGTAATGGACGCTTACTCAGAGCAAGAAAGATCTCAGCTTGCTCTGATCCA 1668
Query 1523 AAGGTTCTTAGCAGGTGGAGGGTTTAGTCTCAGTGATCACCATACTACTTATCAGTCACC 1582
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1669 AAGGTTCTTAGCAGGTGGAGGGTTTAGTCTCAGTGATCACCATACTTCTTATCAGTCACC 1728
Query 1583 GCCGCCTCCATGTACAGAGTCATCATATGTTGAAGCCGCAATGAAAGATCTTCATCAGCT 1642
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1729 GCCGCCTCCATGTACAGAGTCATCATATGTTGAAGCCGCCATGAAAGATCTTCATCAGCT 1788
Query 1643 TCCTTGGCTTGAGAGGTTTGTGTCTGTTATAAGTGATGATTACTATGAAGAGTATAATAG 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 TCCTTGGCTTGAGAGGTTTGTGTCTGTTATAAGTGATGATTACTATGAAGAGTATAATAG 1848
Query 1703 CCAGTGAAAGTAGTAGAATTGTAATTTAATAGCCTTGAGGATCCGGCTTGGTTTGGTTCA 1762
|||||||||| |||||||| ||||||||||||| |||||||| ||| ||||||||||||
Sbjct 1849 CCAGTGAAAGGAGTAGAATGGTAATTTAATAGCTTTGAGGATTCGGTTTGGTTTGGTTCG 1908
Query 1763 GAGAGGCCAAACGAGAGTATCTCACTCTCGAAAGTAATTGTTGGGAGGGTTTT-AGATTC 1821
| ||||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||||
Sbjct 1909 GCGAGGCCAAACGAGAGTATCTCGCTCTCGAAAGAAATTGTTGGG-GGGTTTTTAGATTC 1967
Query 1822 TTGATGAACTCAAACAA 1838
|||||||||||||||||
Sbjct 1968 TTGATGAACTCAAACAA 1984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5