BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19820.1
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492888 jgi|Araly1|492888|fgenesh2_kg.7__2321__AT4G19820.1 1177 0.0
Ahg329582 jgi|Araly1|329582|fgenesh1_pm.C_scaffold_7001809 819 0.0
> Ahg492888 jgi|Araly1|492888|fgenesh2_kg.7__2321__AT4G19820.1
Length=1113
Score = 1177 bits (637), Expect = 0.0
Identities = 788/858 (92%), Gaps = 22/858 (3%)
Strand=Plus/Plus
Query 1 ATGTCTTCCACAAAACTCAT--T-TCCATCACTTTCTTCTTATCTCTCCTCCTACGATTC 57
||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCCTCAAAACTCATCATCTCCATCACTTTCTTCTTATCTCTCCTCCTACGATTC 60
Query 58 TCCTCCGCCCAAACAGTCGTGAAAGCTACCTACTGGTTTGCGGAGAGTGAATCTCCGTTG 117
|||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| |
Sbjct 61 TCCTCCGCCCAAACCGCCGTGAAAGCTACGTACTGGTTTGCGGAGAGTGAATCTCCGGTC 120
Query 118 GCCCAAATTGACTCATCTCTCTTCACTCACCTTTTTTGCGCTTTCGCCGATATCAACACT 177
|| | |||||||||||||||||||| ||||| |||||||||||||| || |||||| ||
Sbjct 121 GCGGACATTGACTCATCTCTCTTCACCCACCTATTTTGCGCTTTCGCTGACATCAACCCT 180
Query 178 CTAACCTATCAAGTCATTGTCTCCTCCAGAAACAAACCCAAATTCTCAACATTTACACAA 237
||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 181 CTAACATATCAAGTCATTGTCTCCTCCAGGAACAAACCCAAATTCTCCACCTTTACACAA 240
Query 238 ACCGTCCGACGGAGAAACCCTACCGTGAAAACCCTTTTGTCTATCGGCGGTGATTTCACA 297
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 ACCGTCCAACGGAGAAACCCTACCGTGAGAACCCTTTTGTCTATCGGCGGTGATTTCACA 300
Query 298 TATAATTTCGCGTTTGCGTCTATGGCAAGTAACCCCACCTCTAGAAAACTGTTCATTAG- 356
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 301 TATAATTTCGCGTTTGCGTCTATGGCAAGTAACCCCACCTCTAGAAAATTGTTCATT-GC 359
Query 357 TTCTTCTATTAAGCTCGCTAGATCGTGCGGATTCCACGGTCTCGATCTAAATTGGAAGTA 416
|||||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||
Sbjct 360 TTCTTCTATTAATCTCGCTAGATCATATGGATTCCACGGTCTCGATCTATATTGGAAGTA 419
Query 417 TCCGAGCATTACGACGGAGATGGACAATTTCGGGAAGCTACTTCGAGAATGGCGATTGGC 476
||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 420 CCCGAGCACTACGACAGAGATGGACGATTTCGGGAAGCTACTTCAAGAATGGCGATGGGC 479
Query 477 GGTTGA-AGCAGAGGCTAGAAGCAGCGGTAAACCGCGTTTGCTTTTGACGGCTGCGGTAT 535
|||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 480 GGTT-ATAGCAGAGGCTAGAAGCAGCGGTAAACCGCGTTTGCTTTTGATGGCTGCGGTTT 538
Query 536 TCTACTCCTACAGTTATTATTCGGT-CTTACACCCAGTT-AATGCCGTTGCCGATAGCTT 593
|||||||||| || |||| || ||||| ||| || |||||||||||||||||
Sbjct 539 TCTACTCCTA---TT------CGGTACTG-CACCCGGTTCAA-GCCGTTGCCGATAGCTT 587
Query 594 AGATTGGGTTAATCTTGTTGCCTACGATTTTTATGAATCGGGTTCGTCTAGAGTAACTTG 653
||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 588 GGATTGGGTTAATCTTGTTGCCTATGATTTTTACGATTCGGGTTCGTCTAGAGTAACTTG 647
Query 654 CTCACCAGCTCCTCTCTACGATCCTATAACCACAGGTCCAAGCGGCGACGCCGGAGTGAG 713
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 648 CTCACCAGCTCCTCTCTACGATCCTATAACCGCAGGTCCAAGCTGCGACGCCGGAGTGAG 707
Query 714 AGCGTGGACTCAAGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCATTA-TACG 772
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 708 AGCGTGGACTCAAGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCAT-ACTACG 766
Query 773 GCTACGCATGGTGTCTCACAGACGCCAAGAATCATAACTACTACGCGAATAGCAGCGGAC 832
||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 767 GCTACGCGTGGCGTCTCACAGACTCCAAGAATCATAACTACTACGCTAATAGCAGCGGAC 826
Query 833 CGGCGATATCACCAGACG 850
| ||||||||||| ||||
Sbjct 827 CAGCGATATCACCTGACG 844
Score = 303 bits (164), Expect = 1e-81
Identities = 199/216 (92%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 886 GTGGATAACAAAGCAACGATGGTTTATAATTCGAATTTGGTTCAGAATTACTGTTATGCC 945
|||| ||||||||||| || |||||||| ||||| ||||| ||||| |||||||| |||
Sbjct 844 GTGGGTAACAAAGCAATGAAGGTTTATAGTTCGACGTTGGTCCAGAACTACTGTTACGCC 903
Query 946 AAGAAGACTTGGATTGGTTACGATGATAATCAAAGTATTGTTA-TGAAAGTGAAATACGC 1004
|||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||||
Sbjct 904 AAGAAGACTTGGATTGGTTACGATGATAATCAGAGTATTGTTACT-AAAGTGAGATACGC 962
Query 1005 TAAGCAAAGAGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCTGACGATAATTCTCG 1064
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 963 TAAGCAGAGAGGTCTACTTGGTTATTTCTCGTGGCACATTGGAGCTGACTATAATTCTCT 1022
Query 1065 TCTATCTCGTGCAGGTTCGGTTTTATTCCAATTCTA 1100
|||||||||||||||||||||||||| |||||||||
Sbjct 1023 TCTATCTCGTGCAGGTTCGGTTTTATCCCAATTCTA 1058
> Ahg329582 jgi|Araly1|329582|fgenesh1_pm.C_scaffold_7001809
Length=1140
Score = 819 bits (443), Expect = 0.0
Identities = 877/1082 (81%), Gaps = 48/1082 (4%)
Strand=Plus/Plus
Query 22 TCCATCACTTTCTTCTTATCTCTCCTCCTACGATTCTCCTCCGCCCAAACAGTCGTGAAA 81
||||| || |||||| ||||| |||| | || ||||| || ||||| ||||| |||
Sbjct 34 TCCATAACATTCTTC--CTCTCT-CTCC--C-ATCCTCCTATGCACAAACCGTCGTAAAA 87
Query 82 GCTA-CCTACTGGTTTGCGGAGAGTGAATCTCC-GTTGGCCCAAATTGACTCATCTCTCT 139
|| | | || ||||| | | |||||||| ||| ||| || | ||||||||||||||||
Sbjct 88 GC-ATCGTATTGGTTCCCTGCGAGTGAATTTCCGGTT-ACCGACATTGACTCATCTCTCT 145
Query 140 TCACTCACCTTTTTTGCGCTTTCGCCGATATCAACACTCTAACCTATCAAGTCATTGTCT 199
||||||| || |||||||||||||| ||| ||||| ||| |||| ||||||||| ||||
Sbjct 146 TCACTCATCTCTTTTGCGCTTTCGCTGATCTCAACTCTCAAACCAATCAAGTCACTGTCG 205
Query 200 CCTCCAG-AAACAAACCCAAATTCTCAACATTTACACAAACCGTCCGACGGAGAAACCCT 258
||||| | ||| |||| ||||||||||| ||||||||||| |||| ||| |||||||||
Sbjct 206 CCTCC-GCGAACCAACCTAAATTCTCAACCTTTACACAAACTGTCCAACGCAGAAACCCT 264
Query 259 ACCGTGAAAACCCTTTTGTCTATCGGCGGT-GATTTCACATATAATTTCGCGTTTGCGTC 317
| || |||||||||||||||||||||||| || || | |||| ||||| ||| ||
Sbjct 265 TCTGTTAAAACCCTTTTGTCTATCGGCGGTGGA-ATCGCGGATAAAACCGCGTATGCTTC 323
Query 318 TATGGCAAGTAACCCCACCTCTAGAAAACT-GTTCATTAG-TTCTTCTATTAAG-CTCGC 374
||||||||| |||||||| ||| ||||| | ||||||| | |||||| | |||| |||||
Sbjct 324 TATGGCAAGCAACCCCACTTCTCGAAAA-TCGTTCATT-GATTCTTCGA-TAAGACTCGC 380
Query 375 TAGATCGTGCGGATTCCACGGTCTCGATCTAAATTGGAAGTATCCGAGCATTACGACGGA 434
|||||| | |||||||||||||| |||||| | ||| |||||||||||| |||||||
Sbjct 381 TAGATCATATGGATTCCACGGTCTTGATCTAGACTGGGAGTATCCGAGCAGCGCGACGGA 440
Query 435 GATGGA-CAATTTCGGGA-AGCTACTTCGAGAATGGCGATTGGCGGTTGAAGCAGAGGCT 492
||| || ||| ||||||| | ||||||||||||||||||| || |||| ||| || |||
Sbjct 441 GAT-GACCAACTTCGGGACA-CTACTTCGAGAATGGCGATCAGCTGTTGTAGCCGAAGCT 498
Query 493 AGAAGCAGCGGTAAACCGCGTTTGCTTTTGACGGCTGCGGTATTCTACTCCTACAGTTAT 552
|| ||||||||||||||||||||||||||| | |||||||| ||||||||| ||| |||
Sbjct 499 AGTAGCAGCGGTAAACCGCGTTTGCTTTTGGCAGCTGCGGTTTTCTACTCCAACAATTAC 558
Query 553 TATTCGGT-CTTACACCCAGTT-AATGCCGTTGCCGA-TAGCTTAGATTGGGTTAATCTT 609
|||||||| | | |||| ||| ||| |||||| | | ||| | |||||||||||||||
Sbjct 559 TATTCGGTAC-TGTACCCGGTTCAAT-CCGTTG-CTAGCAGCCTGGATTGGGTTAATCTT 615
Query 610 GTTGCCTACGATTTTTATGAATCGGGTTCGTCTAGAGTAACTTGCT-CACCAGCTC-CTC 667
| || || |||||||| | | |||||| ||| ||||| || | | ||||||| | |||
Sbjct 616 ATGGCTTATGATTTTTACGGACCGGGTTGGTCCAGAGTGAC-CGGTCCACCAGC-CGCTC 673
Query 668 TCTACGATCCTAT-AACCACAGGTCCAAGCGGCGACGCCGGAGTGAGAG-CGTGGACTCA 725
| | |||||| | || | ||||||||||||| ||||| |||| || | | |||| |||
Sbjct 674 TGTTTGATCCT-TCAAACGCAGGTCCAAGCGGAGACGCGGGAGCAAG-GTCATGGATTCA 731
Query 726 AGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCATTA-TACGGCTACGCATGGT 784
||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 732 AGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCAT-ACTACGGCTACGCGTGGC 790
Query 785 GTCTCACAGACGCCAAGAATCATAACTACTACGCGAATAGCAGC-GGACCGGCGATATCA 843
|||||||| |||| || | ||| | |||||||||| || || | ||| | |||||||||
Sbjct 791 GTCTCACAAACGCTAACAGTCACAGCTACTACGCGCCTACCA-CAGGAGCTGCGATATCA 849
Query 844 CCAGACGGTTCTATCGGATACGATCAGATAAG-AAGGTTCATAGTGGATAACAAAGCAAC 902
|| || ||||| || || |||| ||||||||| ||| || ||||| |||||| ||||||
Sbjct 850 CCGGATGGTTCGATAGGTTACGGTCAGATAAGGAAGTTT-ATAGTAGATAACGGAGCAAC 908
Query 903 GATGGTTTATAATTCGAATTTGGTTCAGA-ATTACTGTTATGCCAAGAAGA-CTTGGATT 960
| ||||||||| |||| |||| | || |||| ||||| ||| | | | ||||||||
Sbjct 909 AACGGTTTATAACTCGACGGTGGT-CGGAGATTATTGTTACGCCG-GCACAACTTGGATT 966
Query 961 GGTTACGATGATAATCAAAGTATTGTTATGAAAGTGAAATACGCTAAGCAAAGAGGTCTA 1020
||||| || |||||||| |||||||| | |||||| | |||||||||||| ||||||||
Sbjct 967 GGTTATGACGATAATCAGAGTATTGTGACGAAAGTTAGATACGCTAAGCAGAGAGGTCTT 1026
Query 1021 CTTGGTTATTTCTCGTGGCACATTGGAGCTGACGATAATTCTCGTCTATCTCGTGCAGGT 1080
|| ||||| ||||||||||| |||| ||||||||||||||| || |||||||||||| |
Sbjct 1027 CTCGGTTACTTCTCGTGGCATGTTGGTGCTGACGATAATTCTGGTTTATCTCGTGCAGCT 1086
Query 1081 TC 1082
||
Sbjct 1087 TC 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41020258692
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5