BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19960.1
Length=2804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492879 jgi|Araly1|492879|fgenesh2_kg.7__2312__AT4G19960.1 2135 0.0
> Ahg492879 jgi|Araly1|492879|fgenesh2_kg.7__2312__AT4G19960.1
Length=2678
Score = 2135 bits (1156), Expect = 0.0
Identities = 1364/1462 (93%), Gaps = 23/1462 (2%)
Strand=Plus/Plus
Query 38 TTTGGTTTAGCTTTTTTATCCAATTCCATCAGAACCAGAGTTGTTTGTTGCTGCTCTGTA 97
||| |||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct 1 TTTTGTTTAGCTTTATTATCCATTTCCATCAGAACCAGAGTTGTTCGTTGTTGCTCTGTA 60
Query 98 AT----A-TACTCGAGTCAA-TCTTTATACTTAAGGaaaaaaaaaGTTTCAATCTTTGGT 151
|| | ||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 61 ATAACAACAACTCGAGTCAATTC-TTATACTTAAGGAAAAAAAAAGTTTCAATTTTTGGT 119
Query 152 TTCATCTCAGGCGAAAATTGCTAC-AAATGGTAATCGATTTCTAGGGCTCTGACTGGTTT 210
||||||||| |||||||| || | |||| || |||||||||||||||||||||||||||
Sbjct 120 CTCATCTCAGTCGAAAATTTCT-CAAAATAGTTATCGATTTCTAGGGCTCTGACTGGTTT 178
Query 211 TGATTAAAGGAATCAATTCAGGGGA-ATTTCGAGTTC--TT-TTGTTACAAAAATGGCGG 266
||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 179 TGATTAAAGGAATCAATTCAGGGGAGATTTCGAGTTCTGTTGTTGTTACAAAAATGGCGG 238
Query 267 AAAGAGTCGAAGCATCATCTGTACCAGAAGGAGAAAATACAATAGAAGAAAGAGAAGTAG 326
|||| ||||||| |||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 239 AAAGGGTCGAAG---CATCTGTAACAGAAGGAGAAAATACTATTGAAGAAAGAGAAGTAG 295
Query 327 GAGCTATGTGGGAATTAGAGCAGAAACTTGATCAACCCATGGATGAAGAAGCTAATAAGC 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GAGCTATGTGGGAATTAGAGCAGAAACTTGATCAACCCATGGATGAAGAAGCTAATAAGC 355
Query 387 TCAACAACATGTATAG-AGA-AAA-GGGATTATCAATGTTGATGCTTCTAAGGCTCTCTT 443
| |||||||||||||| ||| ||| ||| || ||||||||||||||||||||||||||||
Sbjct 356 TTAACAACATGTATAGTAGAGAAAAGGGCTTGTCAATGTTGATGCTTCTAAGGCTCTCTT 415
Query 444 TTCAAAGTCTAGGGATAGTTTATGGAGATTTAGGGACGTCTCCATTGTATGTGTTTTACA 503
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 416 TTCAAAGTTTAGGGATAGTTTATGGAGATTTAGGGACTTCTCCATTGTATGTGTTCTACA 475
Query 504 ATACATTCCCTGACGGAATTGATGATAGTGAAGATGTAATCGGAGCTCTTTCTTTGATCA 563
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ATACATTCCCTGATGGAATTGATGATAGTGAAGATGTAATCGGAGCTCTTTCTTTGATCA 535
Query 564 TTTACTCTCTTTTGCTTATTCCTCTCATCAAGTATGTGTTCATTGTCTGCAAAGCTAATG 623
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTTACTCTCTGTTGCTTATACCTCTCATCAAGTATGTGTTCATTGTCTGCAAAGCTAATG 595
Query 624 ATAATGGTCAAGGTGGGACTTTAGCTATATATTCGTTGCTTTGTAGACATGCTAAAGTGA 683
|||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||||
Sbjct 596 ATAATGGTCAAGGTGGGACTCTAGCGATATACTCTTTGCTTTGTAGACATGCTAAAGTGA 655
Query 684 AACTAATCCCGAATCAGCACCGTAGTGATGAGGATCTCACGACTTATAGTCGAACTGTAT 743
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 656 AACTAATCCCGAATCAGCACCGCAGTGATGAGGATCTCACGACTTATAGTCGAACTGTAT 715
Query 744 CCGCTGAAGGGTCTTTTGCTGCTAAAACCAAGAAATGGTTGGAGGGTAAAGAATGGAGGA 803
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 716 CCGCTGAAGGGTCTTTTGCTGCTAAAACCAAGAAGTGGTTGGAGGGTAAAGATTGGAGGA 775
Query 804 AGAGAGCTCTTCTTG-TCGTTGTTCTTCTCGGTACTTGTATGATGATCGGTGATGGTATC 862
||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 776 AGAGAGCTCTT-TTGGTCGTTGTTCTTCTCGGGACTTGTATGATGATCGGTGATGGTATC 834
Query 863 TTAACTCCAGCTATCTCCGTTCTTTCAGCAACTGGTGGGATCAAAGTAAACAATCCAAAA 922
||||||||||| |||||||||||||| |||||||||||||||||| | | ||| |||||
Sbjct 835 TTAACTCCAGCCATCTCCGTTCTTTCCGCAACTGGTGGGATCAAAATCATCAAACCAAAT 894
Query 923 ATGAGCGGCGATATCGTCGTGCTTGTGGCAATTGTCATTTT-GATAGGATTGTTCAGTAT 981
||||||||||||||||| ||||||||| ||||||||||||| | | ||||||||| || |
Sbjct 895 ATGAGCGGCGATATCGTTGTGCTTGTGTCAATTGTCATTTTAG-TGGGATTGTTCTGTTT 953
Query 982 GCAACACTATGGTACAGACAAAGTCGGATGGCTCTTTGCACCTATCGTGCTTATTTGGTT 1041
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 954 GCAACACTACGGTACAGACAAAGTCGGATGGCTCTTTGCGCCTATCGTGCTTATTTGGTT 1013
Query 1042 CCTCTTCATTGGAGCCACTGGGATGTACAACATCTGCAAGTATGACACAAGCGTTTTAAA 1101
|||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct 1014 CCTCTTCATTGGAGCCACTGGGTTATACAACATCTGCAAACATGACACAAGCGTTTTAAA 1073
Query 1102 AGCGTTTTCGCCTACATATATATACTTGTACTTCAAAAGACGAGGTCGAGATGGTTGGAT 1161
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1074 AGCGTTTTCGCCCACATATATATACTTGTACTTCAAAAGACGAGGTCTAGATGGTTGGAT 1133
Query 1162 ATCGCTCGGTGGCATTCTTCTCAGCATAACAGGCACGGAGGCACTATACGCAGACATTGC 1221
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1134 TTCGCTTGGTGGCATTCTTCTCAGCATAACAGGCACGGAGGCACTCTACGCAGACATTGC 1193
Query 1222 CTATTTCCCCTTACTAGCGATACAGCTCGCCTTTACGTTTTTTGTGTTCCCTTGTCTTCT 1281
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1194 TTATTTCCCGTTACTAGCAATACAGCTCGCCTTTACGTTGTTTGTGTTCCCTTGTCTTCT 1253
Query 1282 TCTAGCATACTGTGGACAAGCTGCTTATCTTGTGATTCATAAGGAACATTATCAAGACGC 1341
|||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 1254 TCTAGCATACTGCGGACAAGCTGCGTATCTTGTAAATCATAAGGAACATTATCAAGACGC 1313
Query 1342 GTTCTATGCATCTATCCCGGATAGTGTCTATTGGCCAATGTTTATAGTCGCGACAGGAGC 1401
||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1314 GTTCTATGCATCTATCCCGAATAGTGTATATTGGCCAATGTTTGTAGTCGCGACAGGAGC 1373
Query 1402 TGCTATTGTTGGGAGCCAAGCTACGATCTCCGGGACTTATTCGATCGTCAAGCAGGCCGT 1461
||| || || |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1374 TGCAATCGTCGGGAGCCAAGCTACGATCTCAGGGACTTATTCGATAATCAAGCAGGCCGT 1433
Query 1462 GGCTCATGGATGTTTTCCTCGA 1483
|||||||| ||||||||||||
Sbjct 1434 AGCTCATGGGTGTTTTCCTCGA 1455
Score = 1707 bits (924), Expect = 0.0
Identities = 1071/1141 (94%), Gaps = 14/1141 (1%)
Strand=Plus/Plus
Query 1665 GGACTGCGGTTGTTCTCGTGATGCTTGTGACCACATTACTAATGGTGCTGATAATGCTAC 1724
|||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |
Sbjct 1550 GGACCGCGGTTGTTCTCGTGATGCTTGTGACCACATTGCTAATGGTGTTGATCATGCTGC 1609
Query 1725 TCGTGTGGCATTGCCACTGGATCCTTGTCCTTATATTCACCTTTCTCTCCTTCTTTGTGG 1784
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1610 TCGTGTGGCATTGCCACTGGATCCTTGTCCTTATATTCACCGTTCTCTCCCTCTTTGTGG 1669
Query 1785 AGTTATCGTACTTCTCAGCCGTGATCTTTAAAATCGATGAAGGAGGATGGGTGCCGCTCA 1844
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1670 AATTATCGTACTTCTCAGCCGTGATCTTTAAGATCGATGAAGGAGGATGGGTTCCGCTCA 1729
Query 1845 TCATAGCAGCGATATCTCTTTTAGTAATGTCAGTCTGGCATTACGCAACAGTCAAGAAAT 1904
||||||||| |||||||||| | ||||||||||| |||||||| ||||| ||||||||||
Sbjct 1730 TCATAGCAGTGATATCTCTTCTCGTAATGTCAGTATGGCATTATGCAACTGTCAAGAAAT 1789
Query 1905 ATGAGTTTGAAATGCACAGTAAAGTGTCCATGAGTTGGATACTCGGCCTCGGTCCCAGCC 1964
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1790 ATGAGTTTGAAATGCACAGCAAAGTGTCCATGAGCTGGATACTCGGCCTCGGTCCCAGCC 1849
Query 1965 TCGGGCTTGTCCGTGTCCC-GGGGATCGGGTTAGTCTACACGGAATTAGCAAGTGGTGTT 2023
||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||
Sbjct 1850 TCGGGCTTGTCCGTGTCCCTGGGG-TCGGGTTAGTCTACACGGAGTTAGCAAGTGGTGTC 1908
Query 2024 CCTCACATTTTCTCTCATTTCATCACCAACCTCCCCGCGATTCATTCGGTTGTAGTCTTT 2083
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1909 CCTCACATTTTCTCTCATTTCATCACCAACCTCCCCGCAATTCACTCGGTTGTAGTCTTT 1968
Query 2084 GTCTGCGTCAAGTACCTTCCGGTTTACACCGTCCCTGAAGAAGAGAGGTTTCTTGTGAAG 2143
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1969 GTCTGCGTCAAGTACCTTCCGGTTTACACCGTCCCTGAAGAAGAGAGGTTTCTTATGAAG 2028
Query 2144 AGAATCGGACCAAAAACATTCCGGATGTTCCGATGTGTAGCCAGATATGGTTACAAAGAT 2203
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 2029 AGAATCGGACCAAAAACATTCCGAATGTTCCGCTGCGTAGCCAGATATGGTTACAAAGAT 2088
Query 2204 CTACACAAGAAAGACGATGATTTCGAGAACAAACTGCTGACTAAACTCTCCTCATTCATT 2263
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 2089 CTACACAAGAAAGACGATGATTTCGAGAACAAACTGCTGACTAACCTCTTCTCATTCATT 2148
Query 2264 CGAATCGAAACTATGATGGAGCCAACTTCAAACTCAAGCACCTACAGCAGCACGTATTCC 2323
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2149 CGAATCGAAACTATGATGGAGCCAGCTTCAAACTCAAGCACCTACAGCAGCACGTATTCC 2208
Query 2324 GTCAACCATACACAAGATTCCACCGTAGACTTGATCCacaacaacaacaaccacaaccac 2383
|||||||||||||||| ||||||||||||||||||||||||||||||| || | | | ||
Sbjct 2209 GTCAACCATACACAAGTTTCCACCGTAGACTTGATCCACAACAACAACCACAATAGCAAC 2268
Query 2384 aacaacaacaTGGATATGTTCTCATCGATGGTGGACTACACGGTATCAACTTTAGACACG 2443
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2269 AACAACAACATGGATATGTTCTCATCAATGGTGGACTACACGGTATCAACTTTAGACACG 2328
Query 2444 ATAGTTTCC-GCTGAATCACTGCATAACACGGTGAGTTTCAGTCAGGACAACACGGTAGA 2502
||||| || ||||| |||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 2329 ATAGTC-CCTGCTGATTCACCGCATAACGCGGTGAGTTTCAGTCAGGACAACACGATAGA 2387
Query 2503 GGAGGAGGAGACGGATGAGTTGGAGTTTCTAAAGACTTGTAAAGAGTCAGGTGTTGTTCA 2562
|||||||| | | ||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2388 GGAGGAGGC-A-G-ATGAGTTGGAGTTTCTAAAGACTTGCAAAGAGTCAGGGGTTGTTCA 2444
Query 2563 TATAATGGGGAACACCGTGGTGAAAGCAAGAACTGGATCATGGCTTCCAAAAAAGATTGC 2622
||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2445 TATTATGGGGAACACTGTGGTGAAAGCAAGAAATGGATCATGGCTTCCAAAAAAGATTGC 2504
Query 2623 GATTGATTATGTTTATGCATTTCTTGCTAAGATTTGTAGGGCCAATAGTGTTATCTTACA 2682
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 2505 GATTGATTATGTTTATGCATTTCTTGCTAAGGTTTGTAGGGAGAATAGTGTTATCTTACA 2564
Query 2683 TGTTCCTCATGAAACCCTTTTAAACGTTGGACAAGTCttttatgtttagtttagttttta 2742
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2565 TGTCCCTCATGAAACCCTTTTAAACGTTGGACAAGTCTTTTATGTTTAGTTTC-TTTTT- 2622
Query 2743 ttattttGCTTTGTAAAACAATTACAGAGAAAGGGTAATAAAAGGATACCAAATTTAAGA 2802
|| |||| | |||||||||||||||| |||||| |||||| |||||||| ||||||||
Sbjct 2623 TT-TTTT--T--GTAAAACAATTACAGATAAAGGGGAATAAAGGGATACCAGATTTAAGA 2677
Query 2803 T 2803
|
Sbjct 2678 T 2678
Score = 137 bits (74), Expect = 4e-31
Identities = 86/92 (93%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1523 ATCTATTGTCCTGATATTAACTGGATACTCATGCTCGGCTGCATCGCGGTTACTGCTAGT 1582
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1456 ATCTATTGCCCTGATATTAATTGGATACTCATGCTCGGCTGCATCGCGGTTACTGCTAGT 1515
Query 1583 TTCAAAAAGCAGAGCCAAATAGGAAATGCATA 1614
||||| || || |||||||| |||||||||||
Sbjct 1516 TTCAAGAATCAAAGCCAAATCGGAAATGCATA 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105814700610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5