BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G20110.2 Length=2405 Score E Sequences producing significant alignments: (Bits) Value Ahg492857 jgi|Araly1|492857|fgenesh2_kg.7__2290__AT4G20110.1 3085 0.0 Ahg313733 jgi|Araly1|313733|fgenesh1_pm.C_scaffold_1002513 628 4e-179 Ahg321210 jgi|Araly1|321210|fgenesh1_pm.C_scaffold_4001267 488 7e-137 Ahg931204 jgi|Araly1|931204|scaffold_303661.1 230 5e-59 Ahg938176 jgi|Araly1|938176|scaffold_502367.1 213 5e-54 > Ahg492857 jgi|Araly1|492857|fgenesh2_kg.7__2290__AT4G20110.1 Length=2273 Score = 3085 bits (1670), Expect = 0.0 Identities = 1952/2085 (94%), Gaps = 32/2085 (2%) Strand=Plus/Plus Query 328 TTCAGAGATGGGTTTAGTCAACGGGAGAGCTTCGTTGACCTTTCTCCTCGCGGCGTTGAC 387 ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 213 TTCAGTGATGGGTTTAGTCAACGGGAGAGCTTCGTTGACCTTTCTCCTCGCAACGTTGAC 272 Query 388 CATCATCGCTATGGTCGTCGAGGCTAGGTTTGTGGTGGAGAAAGAAAGCATAAGCGTGCT 447 ||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||| Sbjct 273 CATCATCGCGATGGTCGTTGACGCGAGGTTTGTGGTGGAGAAAGAAAGCATAAGCGTGCT 332 Query 448 GAATCCAGAGGAGATGAGGTCGAAGCACGACGGCTCGATAGCCAATTTCGGTTTACCCGA 507 ||||| ||||||||||||||||||| |||||| ||||||||||| ||||| |||||||| Sbjct 333 AAATCCCGAGGAGATGAGGTCGAAGCGCGACGGTTCGATAGCCAACTTCGGGTTACCCGA 392 Query 508 TTACGGTGGGTTTTTAATCGGGTCAGTGGTTTATCCGGATAGTAAAACCGATGGATGCTC 567 |||||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 393 TTACGGCGGGTTTCTAATAGGGTCGGTGGTTTATCCGGATAGTAAAACCGATGGATGCTC 452 Query 568 TGCTTTTGGTAAAACCTTCAAGCCCAAGTTTCCTCGTCCCACTATTCTGCTTCTTGATCG 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 TGCTTTTGGTAAAACCTTCAAGCCCAAGTTTCCTCGTCCCACTATTCTGCTTCTTGATCG 512 Query 628 TGGAGGTTGCTACTTTGCCTTAAAAGCGTGGCACGCGCAGCAAGCAGGCGCGGCTGCAGT 687 ||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct 513 TGGAGGTTGTTACTTTGCCTTAAAAGCGTGGCACGCTCAGCAAGCAGGCGCCGCGGCAGT 572 Query 688 TCTTGTGGCGGATAATGTAGACGAGCCATTGTTGACAATGGATTCACCAGAGGAGAGCAA 747 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 573 TCTTGTGGCGGATAATGTAGATGAGCCATTGTTAACAATGGATTCACCAGAGGAGAGCAA 632 Query 748 AGATGCGGATGGTTTCATAGAGAAGCTAACAATCCCATCGGTGTTAATCGATAAATCATT 807 |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 633 AGATGCAGATGGGTTCATAGAGAAGCTAACAATCCCATCGGTTTTAATCGATAAATCGTT 692 Query 808 TGGAGATGACTTAAGACAAGGGTTTCAGAAAGGGAAAAACATAGT-TATAAAACTAGATT 866 ||||||||||||||| |||||||||||||||| ||||||||||| | | |||||||||| Sbjct 693 CGGAGATGACTTAAGAAAAGGGTTTCAGAAAGGTAAAAACATAGTCT-TGAAACTAGATT 751 Query 867 GGAGAGAGTCTGTGCCTCATCCTGATAAGAGAGTAGAATATGAGCTGTGGACTAATAGCA 926 ||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 752 GGAGAGAATCTGTGCCTCATCCTGATCAGCGAGTAGAATATGAGCTGTGGACTAATAGCA 811 Query 927 ATGATGAGTGTGGTGCACGGTGTGATGAACAGATGGACTTTGTCAAGAACTTTAAAGGTC 986 | || ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| Sbjct 812 ACGACGAGTGTGGTGCACGGTGCGATGAACAGATGGATTTTGTCAAGAACTTTAAGGGTC 871 Query 987 ATGCTCAGATACTCGAAAAAGGCGGTTATACCGCGTTTACGCCGCATTATATTACTTGGT 1046 ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| Sbjct 872 ATGCTCAGATACTCGAAAAAGGCGGTTATACCGCGTTTACGCCACATTATATCACATGGT 931 Query 1047 TTTGCCCTTTTCAGTTTATAAACAGTCCACATTGTAAGTCTCAGTGTATAAACCATGGGA 1106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 932 TTTGCCCTTTTCAGTTTATAAACAGTCCACATTGTAAGTCTCAGTGTATAAACCATGGGA 991 Query 1107 GGTATTGTGCTCCTGACCCTGAGGATAATTTCAGAGAAGGGTATGAAGGGAAAGATGTTG 1166 ||||||||||||||||||||||| | |||||||||||||| |||||||| |||||||||| Sbjct 992 GGTATTGTGCTCCTGACCCTGAGAACAATTTCAGAGAAGGTTATGAAGGCAAAGATGTTG 1051 Query 1167 TGCTTGAGAATCTGAGACAGCTTTGTGTGCATAGAGTTGCGAATGAGAGTAGCAGGCCTT 1226 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1052 TGCTTGAGAATCTGAGACAGCTTTGTGTGCATAGAGTTGCGAATGAGAGTAGCCGGCCTT 1111 Query 1227 GGGTTTGGTGGGATTATGTTACCGATTTTCATTCTCGATGTTCGATGAAGGAGAAGAAAT 1286 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1112 GGGTTTGGTGGGATTATGTTACCGATTTTCATTCGCGATGTTCGATGAAGGAGAAGAAAT 1171 Query 1287 ACAGCATAGATTGTGCTGAGAGTTATGAATCTTTAAGACTTTTTTCAGATTTACCTATTG 1346 |||||||| ||||||||||| || ||| || | | | | | |||||||||||| Sbjct 1172 TTAGCATAGAATGTGCTGAGAG-CAT-CATC---AA-A--TCTATGA-ATTTACCTATTG 1222 Query 1347 AGAAGATCAAGAAATGCATTGGTGATCCTGAGGCTGATACAGAGAACCAAGTTCTGAGAA 1406 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1223 AGAAGATCAAGAAATGCATTGGTGATCCTGAGGCTGATACTGAGAACCAAGTTCTGAGAA 1282 Query 1407 CT-GAGCAAGTATCTCAGATTGGCCGAGGAAACCGGGGAGATGTTACGATATTGCCAACA 1465 | ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1283 -TCGAGCAAGTATCCCAGATTGGCCGAGGTAACCGGGGAGATGTTACGATATTGCCAACA 1341 Query 1466 TTAGTCATCAATAACGCTCAATATCGAGGGAGATTGGAGAGAACCGCGGTTTTAAAGGCG 1525 ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| Sbjct 1342 TTAGTCATCAATAACGCCCAATATCGAGGGAGATTGGAGAGAACCGCTGTTCTAAAGGCG 1401 Query 1526 ATATGCGCTGGTTTTAATGAAACATCGGAGCCTGCCATTTGCTTAAACACAGGTCTAGAG 1585 ||||||||||| || || ||||||||||| ||| |||||||||||||||||||| ||||| Sbjct 1402 ATATGCGCTGGATTCAACGAAACATCGGAACCTCCCATTTGCTTAAACACAGGTTTAGAG 1461 Query 1586 ACAAATGAGTGCCTTGAAAACAATGGTGGTTGCTGGCAGGATACAAAAGCAAACATCACT 1645 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 1462 ACAAATGAGTGCCTTGAAAACAATGGTGGTTGCTGGCAGGACACAAAAGCAAACATAACC 1521 Query 1646 GCTTGTCAAGACACATTCAGAGGAAGACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAA 1705 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1522 GCTTGTCAAGACACATTCAGAGGACGACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAA 1581 Query 1706 TATAAAGGAGACGGGTACACTTCATGTACACCTTATGGGCCTGCGAGGTGTACTATGAAC 1765 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1582 TATAAAGGCGACGGGTACACTTCATGTACACCTTATGGGCCTGCCAGGTGTACTATTAAC 1641 Query 1766 AATGGAGGTTGCTGGTCTGACACAAGGAACGGCTTAACTTTCTCTGCTTGCTCAGACTCT 1825 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1642 AATGGAGGTTGCTGGTCTGACACAAGAAATGGCTTAACTTTCTCTGCTTGCTCAGACTCT 1701 Query 1826 GTATCTACTGGCTGCAAATGTCCTGAAGGTTTCCAAGGCGACGGTTTGACGTGTGAAGAT 1885 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1702 GTGTCTACTGGCTGCAAATGTCCTGAAGGTTTCCAAGGCGACGGTTTCACGTGTGAAGAT 1761 Query 1886 ATTAACGAATGTAAAGAGCGTTCGGTATGTCAATGTAGCGGTTGCAGATGCAAGAACTCA 1945 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1762 ATTAACGAATGTAAAGAGCGTTCGGTGTGTCAATGTAGCGGTTGCAGATGCAAGAACTCA 1821 Query 1946 TGGGGTGGATACAAATGCAGCTGTTCTGGTGACCGGCTTTACATAAACGATCAAGATACT 2005 |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| Sbjct 1822 TGGGGTGGATACAAATGCAGTTGTTCTGGCGACAAGCTTTACATAAACGATCAAGATACT 1881 Query 2006 TGTATAGAGAGATATGGATCCAAAACGGCATGGTGGCTCACATTCTTGATACTGGCTATC 2065 |||||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||| Sbjct 1882 TGTATAGAGAGATATGGATCCAAAACAGCATGGTGGCTCACACTCTTGATCCTAGCTATC 1941 Query 2066 GTTGCAGTAGCCGGTTTAGCTGGTTATATATTCTACAAATACCGGTTCAGGTCTTACATG 2125 || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1942 GTCGCAGTAGCCGGTTTAGCTGGTTATCTATTCTACAAATACCGGTTCAGGTCTTACATG 2001 Query 2126 GACTCAGAGATTATGACGATCATGTCACAGTATATGCCACTTGAGAGCCAAAGAGCTCGT 2185 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2002 GACTCGGAGATTATGACCATCATGTCACAGTATATGCCACTTGAGAGCCAAAGAGCTCGT 2061 Query 2186 GAAGTTCCATCAGAAGCCGAGCCTTTTACACTCTAA--TAGTAT-AT--GACCAAAGTAA 2240 ||||||||||||||||| |||||||||||||||||| || ||| || ||||||||||| Sbjct 2062 GAAGTTCCATCAGAAGCTGAGCCTTTTACACTCTAAACTAATATTATATGACCAAAGTAA 2121 Query 2241 CCAAAACTGTCATACACAAAGAAATGTTTGAGATCAATTAATGTACATATGAATTATACT 2300 |||||||| || |||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 2122 CCAAAACTTTCCTACACAAAGAAATGTTTGAGATCAATTAATGTACATATAAACTATACT 2181 Query 2301 GTAAAAATAAAAGAGTGAGATAGAGTTGTGTATATTTTCATGGCaaaaaaaTAAATAATT 2360 |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2182 GTAAAAATAAAAGAGTGAGATAGAGTTGTGTATATT--CATGGCAAAAAA---------- 2229 Query 2361 TGGATGTAAAGAGACTTTTGAAGAAAATAAAACAAATATTGCTTT 2405 | ||||||||| |||||| |||||||||||||||| |||||||| Sbjct 2230 -G-ATGTAAAGAAACTTTTCAAGAAAATAAAACAAAAATTGCTTT 2272 Score = 300 bits (162), Expect = 4e-80 Identities = 202/220 (92%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 85 TAACAAAAGTCTAACATCTTCCAAATT-TTTTCCATTTTCTAAAATTATGTTTTGAGTTT 143 |||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| | Sbjct 1 TAACAAAAGTCTAACATCTTCC-AATTCTTTTCCATTTTCTAAAA-TATGTTTTGAGTGT 58 Query 144 GACGTTTCTTTGT--TATTTATATAAACTATAGTATGCTATCATCTTCAATCAGAAACAG 201 || ||||||| | ||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 59 GATTTTTCTTTTTCGTATTTATATGAAC--TAGTATGCTATCATCTTCAATCAGAAACAG 116 Query 202 TTCCACAGAAGttttctgttttaacttttcctctgtttttgatttttctctctgaatctc 261 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 117 TTCCACAGAAGTTTTCTGTTTTATCTTTTCCTCTGTTTTTGATTTTTCTCTCTGAATCTC 176 Query 262 tccttcatttcCCCGGGAAATAGTACCAGAAAGGTTATCA 301 |||||||||| || |||||||||||| ||| ||||| ||| Sbjct 177 TCCTTCATTTTCCGGGGAAATAGTACAAGAGAGGTTTTCA 216 > Ahg313733 jgi|Araly1|313733|fgenesh1_pm.C_scaffold_1002513 Length=1896 Score = 628 bits (340), Expect = 4e-179 Identities = 1250/1671 (75%), Gaps = 135/1671 (8%) Strand=Plus/Plus Query 570 CTTTTGGTAAAACCTTCAAGCCCAAGTTTCCTCGTCCCACTATTCTGCTTC-TTGATCGT 628 |||||| |||||| ||||| ||||| || |||||||| || ||| | || | |||||| Sbjct 233 CTTTTGATAAAACTTTCAAACCCAAATTCCCTCGTCCTACCATT-TTAATCATCGATCGT 291 Query 629 GGAG-GTTGCTACTTTGCCTTAAAAGCGTGGCACGCG-CAGCAAGCAGGCGCGGCTGCAG 686 |||| | ||||||||||| ||||| | ||| ||| | || ||| | || || || |||| Sbjct 292 GGAGAG-TGCTACTTTGCATTAAAGGTATGGAACG-GTCAACAATCCGGTGCAGCAGCAG 349 Query 687 TTCTT-GTGGCGGATAATGTAGACGAGCCATTGTTGACAATGGATTCACCAGAGGAGA-G 744 || || || || ||||| || || ||||||||| | || ||||||||||| ||||| | Sbjct 350 TT-TTAGTAGCTGATAACGTTGATGAGCCATTGATAACTATGGATTCACCTGAGGA-ATC 407 Query 745 CAAAGATGCGGATG-GTTTCATAGAGAAGCT-AACAATCCCATCGG-TGTTAATCGA-TA 800 |||||| || |||| ||| |||||||| || ||| || || |||| | |||||||| | Sbjct 408 CAAAGAAGCTGATGACTTT-ATAGAGAAACTCAAC-ATTCCTTCGGCT-TTAATCGACT- 463 Query 801 AATCATTT-G-GAGAT-GACTTAAGACAAGGGT-TTCAGAAAGG-GAAAAACATAGTTAT 855 || ||| | | || ||| ||| ||| | | || | ||||| || || |||| | Sbjct 464 TTTC-TTTCGCCA-ATACACTCAAG-CAA-GCTCTTAAAAAAGGCGAGGAA-GTAGTCCT 518 Query 856 -AAAACTAGATTGGAGAGAGTC-TGTGCCTCATCCTGATAAGAGAGTAGAATATGAGCTG 913 || | |||| ||||| ||||| | | |||||||| ||| ||||||| || |||||| | Sbjct 519 GAAGA-TAGACTGGAGTGAGTCAT-TACCTCATCCGGATGAGAGAGTTGAGTATGAGTTA 576 Query 914 TGGACTAATAGC-AATGATGAGTGTGGTGCACGGTGTGATGAACAGATGGACTTTGTCAA 972 |||||||| | | ||||||||||||||||| ||||| ||||| |||||| | |||||||| Sbjct 577 TGGACTAACA-CGAATGATGAGTGTGGTGCGCGGTGCGATGAGCAGATGAATTTTGTCAA 635 Query 973 GAACTTTAAAGGTCATGCTCAGATACTCGAAAAAGGCGGTTATAC-C-GCGTTTACGCCG 1030 |||||| ||||| ||||| ||||| || |||||||| || |||| | ||| || || Sbjct 636 GAACTTCAAAGGGCATGCGCAGATTCTTGAAAAAGGAGG--ATACTCTTTGTTCACACCT 693 Query 1031 CATTATATTACTTGGTTTTGCCCTTTTCAGTTTAT-AAAC-AGTCCA-CATTGTAAGTCT 1087 ||||| ||||| |||||||| || | || |||| | || | | || ||||||||| Sbjct 694 CATTACATTACATGGTTTTGTCC--TAAAGATTATGTTTCTAG-CAATCAATGTAAGTCT 750 Query 1088 CAGTGTATAAACCATGGGAGGTATTGTGCTCCTGACCCTG-AGGATAATTTCAGAGAAGG 1146 |||||||| ||||| ||||||||||||||||||||||||| | | | ||| |||| || Sbjct 751 CAGTGTATCAACCAAGGGAGGTATTGTGCTCCTGACCCTGAACAAGACTTT-GGAGATGG 809 Query 1147 GTATGAAGGGAAAGATGTTGTGCTT-GAGAATCTGAGACAGCTT-TGTGTGCATAGAGTT 1204 || || || ||||| | || || ||||||||||||||| || ||||| |||||||| Sbjct 810 ATACGATGGCAAAGACATCGT-TTTCGAGAATCTGAGACAG-TTATGTGTTCATAGAGTA 867 Query 1205 GCGAATGAGAGTAGCAGGCCTTGGGTTTGGTGGGATTATGTTACCGATTTTCATTC-TC- 1262 || || |||| || | || |||||||||||||||| ||||| || |||||||| | || Sbjct 868 GCAAAAGAGAATAACCGGTCTTGGGTTTGGTGGGACTATGTGACTGATTTTCA--CATCA 925 Query 1263 GATGTTCGATGAAGGAGAAGAAATACAGCATAGATTGTGCTGAGAGTTATGAATCT-TTA 1321 | ||||| |||||||||||||| || |||| ||| |||||||||| | | | | || Sbjct 926 GGTGTTCAATGAAGGAGAAGAAGTATAGCAAAGAATGTGCTGAGA---A--AGT-TGTT- 978 Query 1322 AGACTTTTTTCAGATTTACCTA-TTGAGAAGATCAAGAAATGCATTGGTGATCCTGAGGC 1380 || | | || | ||| || | |||| ||||||||||||||||||||||||||||| || Sbjct 979 -GA-ATCTCTC-GGTTTGCC-ACTTGACAAGATCAAGAAATGCATTGGTGATCCTGAAGC 1034 Query 1381 TGATACAGAGAACCAAGTTCTGAGAA-CTGAGCAAGTATCT-CAGATTGGCCGAGGAAAC 1438 |||| ||||| ||||| ||| || ||||||||| || ||| | || | ||| || Sbjct 1035 TGATGTGGAGAATGAAGTTTTGA-AAGCTGAGCAAGCG-CTTCAGGTAGGACAAGGTGAC 1092 Query 1439 CG-GGGAGATGTTACGATATTGCCAACATT-AGTCATCAATAACGCTCAATATCGAGGGA 1496 || ||| ||||| || || ||||||||||| | || |||| || |||||||| || || | Sbjct 1093 CGCGGG-GATGTCACAATCTTGCCAACATTGA-TCGTCAACAATGCTCAATACCGCGGTA 1150 Query 1497 GATTGGAGAGAACCGCGGTT-TTAAAGGCGATATGCGCTGGTTTTAATGAAACATCGGAG 1555 | | ||||||| || || |||| ||| ||||| | || ||||| |||| | | || Sbjct 1151 AACTCGAGAGAAATGCAGTACTTAA-GGCTATATGTTCAGGATTTAAGGAAAGAACTGAA 1209 Query 1556 CCTGCCATTTG-CTTAAACACAGGTCTAGAGACAAATGAGTGCCTTGAAAACAA-TGGTG 1613 || | || || || || || | | || ||||| || || || ||| ||| ||| | Sbjct 1210 CCGGGAATCTGTCT-AAGTGGAGATATCGAAACAAACGAATGTCTCGAAG-CAAATGGAG 1267 Query 1614 GTTGCTGGCAGGATACAAAAG-CAAACATCACTGCTTGTCAAG-ACACATTCAGAGGAAG 1671 | || |||||||| | || | | || | || ||||| |||| ||||||| || ||||| Sbjct 1268 GGTGTTGGCAGGACATGAA-GTCTAATGTAACAGCTTG-CAAGGACACATTTAGGGGAAG 1325 Query 1672 ACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAATATAAAGGAGACGGGTACACTTCATG 1731 | |||| || || || |||||||| ||||| || ||||||||||| || || || ||||| Sbjct 1326 AGTCTGTGAATGCCCTGTTGTAAATGGTGTGCAGTATAAAGGAGATGGCTATACCTCATG 1385 Query 1732 T-ACACCTTATGGGCCTGCGAGGTG-TACTATGAA-CAATGGAGGTTGCTGGTCTGACAC 1788 | | ||||||||| ||||| || || | | || || ||| ||||||||||||||||| || Sbjct 1386 TGA-ACCTTATGGCCCTGCCAGATGCT-CGATTAATCAA-GGAGGTTGCTGGTCTGAAAC 1442 Query 1789 -AAGGAACGGCTTAACTTTCTCTGCTTGCTCAGA-CTCTGTAT-C-TACTGGCTG-CAAA 1843 || || |||||||||||||| |||||||| || || || | | | | || || | Sbjct 1443 CAAA-AAGGGCTTAACTTTCTCCGCTTGCTC-GAACT-TGGAGACAT-CGGGATGTCGC- 1497 Query 1844 TGTCCTGAAGG-TTTCCAAGGCGACGGT-TTGACGTGTGAAGATATTAACGAATGTAAAG 1901 || ||| ||| ||| |||| || ||| || | |||||||| ||| | |||||||| | Sbjct 1498 TGCCCTCCAGGGTTTA-AAGGAGATGGTCTTAAA-TGTGAAGACATTGATGAATGTAAGG 1555 Query 1902 AGCGTTCGG-TATGTCAATGT-AGCGGTTGCAGA-TGCAAGAACT-CATGGGGTGGATAC 1957 | | || | | ||||||||| | || |||| | || |||||| | ||||| || | Sbjct 1556 AACAATCAGCT-TGTCAATGTGAT-GGATGCA-ACTGTAAGAACAAC-TGGGGAGGCTTT 1611 Query 1958 AAATGCAGCTGTTCTGGTGACCGGCTTTACAT-AAACGATCAAGATACTTGTATAGAGAG 2016 |||||| || ||||| | || || ||||| ||| || ||||| |||||||| ||||| Sbjct 1612 GAATGCAAATGCTCTGGAAATCGTCTCTACATGAAA-GAACAAGACACTTGTATTGAGAG 1670 Query 2017 ATAT-GGATCCAA-AA-CGGCATGGTGGCTC-ACATTCT-TGATACTGGCTATC-GTTGC 2070 | | ||||| || || ||| ||||| || || || | |||| || ||| | ||||| Sbjct 1671 A-AGCGGATC-AAGAATCGG-ATGGTT-CTTTACGTT-TGTGATTCTAGCTG-CAGTTGC 1724 Query 2071 AGTAGCCGGT-T-TAGCTGGTTATATATTCTACAAATACCGGT-TCAGGTCTTACATGGA 2127 | ||| | | ||| |||||| |||||||||| || || | |||||||||| ||||| Sbjct 1725 A--AGCATATGTGTAGGTGGTTACGTATTCTACAAGTATCG-TCTCAGGTCTTATATGGA 1781 Query 2128 CTCAGAGATTATGACGATCATGTCACAGTATATGCCACTTG-AGAGCCAAA 2177 ||||| || ||| |||| ||||| ||||| |||||| ||| ||||||||| Sbjct 1782 TTCAGAAATCATGGCGATTATGTCTCAGTACATGCCA-TTGGAGAGCCAAA 1831 > Ahg321210 jgi|Araly1|321210|fgenesh1_pm.C_scaffold_4001267 Length=1860 Score = 488 bits (264), Expect = 7e-137 Identities = 1227/1672 (73%), Gaps = 145/1672 (9%) Strand=Plus/Plus Query 578 AAAACCTTCAAGCCCAAGTTTCCTCGTCCCACTATTCTGCTTC-TTGATCGTGGAGGT-T 635 |||||||||| ||||||| |||| |||||| || || | || ||||||||||| || | Sbjct 244 AAAACCTTCACTCCCAAGTCTCCTTATCCCACCATCCT-CCTCATTGATCGTGGA-GTGT 301 Query 636 GCT-ACTTTGCCTTAAAAG-CGTGGCACGCGCAGCAAGCAGGCGCGGCTGCAGTTCTTGT 693 | | |||||| ||| ||| ||| | | ||| ||| | || || || || |||||| | Sbjct 302 G-TAACTTTG-CTTTGAAGATATGGAATGGGCAACAATCCGGAGCAGCGGCTGTTCTTTT 359 Query 694 GGCGGATAATGTAGACGAGCCATTGTTGACAATGGATTCACCAGAGGAGA-GCAAAGATG 752 || ||||| | | ||||||||||| |||||||||||||||||||| | | ||||| Sbjct 360 AGCAGATAACATTGTTGAGCCATTGTTAACAATGGATTCACCAGAGGA-ATCCCAAGATA 418 Query 753 CGGA---TG-GTTTCATAGAGAAGCT-AACAATCCCATCGG-TGTTAATCGATAAATCAT 806 || || ||| ||||| || | || |||||||||| | || ||| | || | Sbjct 419 AAGATCCTGACTTT-ATAGACAAAATCAA-GATCCCATCGGCT-TTGATCCTTCGCTC-T 474 Query 807 TT-GGAGAT-GACTTAAGACAAGGGT-TTCAGAA-AGG-GAAAAACATAGT-TAT-AAAA 859 || || ||| | || ||| || | | || | || ||| || || || | | | || | Sbjct 475 TTCGGTGATAGCCTCAAG--AATGCTCTT-AAAAGAGGCGAGGAA-GTAATCT-TGAAGA 529 Query 860 CTAGATTGGAGAGAGTCTGTGCCTCATCCTGATAAGAGAGTAGAATATGAGCTGTGGACT 919 | |||||||| |||||| | || | |||||| ||||||| || |||||||| ||| || Sbjct 530 -TTGATTGGAGTGAGTCTATACCAAACCCTGATGAGAGAGTTGAGTATGAGCTATGGGCT 588 Query 920 AATAGC-AATGATGAGTGT-G-GTGCACGGTGTGATGAA-CAGA-TGGACTTT-GTCAAG 973 || | | || ||| | ||| | |||||| || || || || | | || ||| | ||| Sbjct 589 AACA-CTAACGATAAATGTGGTGTGCAC--TGCCAT-AAGCA-ATTAGA-TTTCATAAAG 642 Query 974 AACTTTAAAGGTCA-TGCTCAGATACTCGAAAAAGGCGGTTATACCGCGTTTACG-CCGC 1031 |||||| |||| | |||||||| || |||||||| |||||||| ||| | | || | Sbjct 643 AACTTT-AAGGGAACGGCTCAGATTCTTGAAAAAGGTGGTTATACTTTGTTCA-GACCTC 700 Query 1032 ATTATATTACTTGGTTTTG-CCCTTTTCAGTTTATAAACAGTCCA-CATTGTAAGTCTCA 1089 |||| ||| |||||||||| ||| || | | || | | || |||||| |||| Sbjct 701 ATTACATTGCTTGGTTTTGTCCC-AAAGAGCTGCTGCTTAG-CAAGCAGTGTAAGACTCA 758 Query 1090 GTGTATAAACCATGGGAGGTATTGTGCTCCTGACCCTGAG-GATAATTTCAGAGAAGGGT 1148 |||| ||||||| |||||||||||||||||||||||| || | | ||| | ||| || | Sbjct 759 GTGTCTAAACCAAGGGAGGTATTGTGCTCCTGACCCTAAGCAAGACTTTGA-AGATGGAT 817 Query 1149 ATGAA-GGGAAAGATGTTGTGCTT--GAGAATCTGAGACAGCTT-TGTGTGCATAGAGTT 1204 || || |||||||| || || || ||||||||||||||| || ||||| |||||||| Sbjct 818 AT-AATGGGAAAGACGTCGT--TTACGAGAATCTGAGACAG-TTATGTGTTCATAGAGTA 873 Query 1205 GCGAATGAG-AGTAGCAGGCCTTGGGTTTGGTGGGATTATGTTACCGATTTTCATTC-TC 1262 || || ||| || | || |||||||||||||||||||||| || |||||| | | || Sbjct 874 GCTAAGGAGAAG-AACACTTCTTGGGTTTGGTGGGATTATGTGACAGATTTT-A-ACATC 930 Query 1263 -GATGTTCGATGAAGGAGAAGAAATACAGCATAGATTGTGCTGAGAGTTA-TGAATCTTT 1320 | ||||| |||||||||||||||||||||| ||| || || |||| | || || | Sbjct 931 AGGTGTTCTATGAAGGAGAAGAAATACAGCAGAGAATGCGC--AGAG--ACTG--TC-GT 983 Query 1321 AAGACTTTTTTCAGATTTACCTATTGAGAAGATCAAGAAATGCATTGGTGATCCTGAGGC 1380 || | | || | || || |||||||||||||||||||||||||||||||||| || Sbjct 984 -GGA-ATCTCTC-GGGTTGTCTCTTGAGAAGATCAAGAAATGCATTGGTGATCCTGATGC 1040 Query 1381 TGATACAGAGAACCAAGTTCTGAGAA-CTGAGCAAG-TATCTCAGATT-GGCCGAG-GAA 1436 |||| |||||| ||||||| | || | || |||| | | |||| || |||| || ||| Sbjct 1041 TGATGTAGAGAATGAAGTTCTAA-AAGCCGAACAAGCTTT-TCAG-TTAGGCCAAGAGAA 1097 Query 1437 AC-CGGGGAGATGTTACGATATTGCCAACATT-AGTCATCAATAACGCTCAATATCGAGG 1494 | ||||| |||||| || || |||||||| | | ||||| || ||||||||||| || Sbjct 1098 TCGCGGGGT--TGTTACAATCTTTCCAACATTGA-TGATCAACAATGCTCAATATCGCGG 1154 Query 1495 GAGATTGGAGAGAACCGCGGTTTTAAAGGCGATATGCGCTGGTTTTAATGAAACATCGGA 1554 | | |||||||||| ||||| | ||||| ||||| | || || || |||| | | || Sbjct 1155 TAAACTGGAGAGAACTGCGGTGCTGAAGGCTATATGTTCAGGATTCAAGGAAAGAACCGA 1214 Query 1555 GCCTGCCATTTGCTTAAACACAGGTCTAGAGACAAATGAGTGCCTTGA-A-AACAATGGT 1612 ||| | || || || || ||| | ||||||| ||||| || ||| | | || ||||| Sbjct 1215 ACCTTCAATATGTTTGAATGCAGATATAGAGACCAATGAATGTCTT-ATAGAA-AATGGA 1272 Query 1613 GGTTGCTGGCAGGATACAAAAG--CAAACATCACTGCTTGTCAAG-ACACATTCAGAGGA 1669 || || ||||| || |||||| | || | || ||||| |||| ||||||| || ||| Sbjct 1273 GGATGTTGGCAAGA--CAAAAGATCTAATGTAACGGCTTG-CAAGGACACATTTAGGGGA 1329 Query 1670 AGACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAATATAAAGGAGACGGGTACACTTCA 1729 ||| | || ||||| |||||| | || || ||||||||||||||||| || || || || Sbjct 1330 AGAGTATGTGAGTGCCCGGTTTTTAATGGGGTTCAATATAAAGGAGATGGTTATACCTCC 1389 Query 1730 TGTACACCTTATGGGCCTGCGAGGTGTACTAT-GAACAATGGAGGTTGCTGGTCTGACAC 1788 || | ||||||||| ||||| || ||| | || |||||||||||| ||||||||||| || Sbjct 1390 TGCAAACCTTATGGACCTGCTAGATGTTC-ATCGAACAATGGAGGCTGCTGGTCTGAAAC 1448 Query 1789 AAGGAACGGCT-TAACTTTCTCTGCTTGCTCAGACTCTGT-ATC-TACTGGCTG-CAAAT 1844 || ||||| | |||||||||||||||| ||| |||| | | | | | || || | | Sbjct 1449 CAG-AACGGGTCTAACTTTCTCTGCTTGTTCAAACTCAGAGA-CAT-CAGGATGTCGT-T 1504 Query 1845 GTCCTGAAGGTTTCCAAGGCGACGGTTTGACGTGTGAAGATATTAACGAATGTAAAGAGC 1904 ||||| ||| |||| || || ||| ||| |||||||| || | ||||| |||||| Sbjct 1505 GTCCTCTAGGCTTCCGTGGAGATGGTCTGAAATGTGAAGACATCGATGAATGCAAAGAGA 1564 Query 1905 GTTCGG-TATGTCAATGTAGCGGT-TGCAGATGCAAGAACTCAT-GGGGTGGATACAAAT 1961 || | | ||||||||| | | |||| |||||||||| || |||| ||||| ||| Sbjct 1565 AATCAGCT-TGTCAATGT-GATGACTGCAAATGCAAGAACA-ATTGGGGAGGATATGAAT 1621 Query 1962 GCAGCTGTTCTGGTGACCG-GCTTTACAT-AAACGATCAAGATACTTGTATAGAGAGAT- 2018 ||| |||||| | | | | || || ||| || |||| |||||||| |||||| Sbjct 1622 GCAAATGTTCTAACAATAGTG-TCTATATGAAA-GAAGAAGACACTTGTATTGAGAGAAG 1679 Query 2019 A--TGGATCCAA-AA-CGGCATGGTGGCTCACA-TTCTTGAT--ACTGGCTATCGTTGCA 2071 | |||||| || || | | ||||| | ||||| || | | | | | || || | || Sbjct 1680 AAGTGGATC-AAGAAGCAG-ATGGTTGTTCACAATTGTGGTTCTAATCGCCAT--T-GCG 1734 Query 2072 G-TAGC-CGGTTTAGCTGGTTATATATTCTACAAATACCGG-TTCAGGTCTTACATGGAC 2128 | || | | ||||| || ||||||||||||||| |||| ||||| ||||||||||| Sbjct 1735 GGTATCTC--TTTAGGTGCTTATATATTCTACAAGTACCATCTTCAG-TCTTACATGGAT 1791 Query 2129 TCAGAGATTA-TGACG-ATCATGTCACAGTATATGCCACTTGAGAGCCAAAG 2178 |||||||| | || | || ||||| ||||| || ||||| || |||||||| Sbjct 1792 TCAGAGAT-AGTGT-GTATTATGTCTCAGTACATACCACTCGATAGCCAAAG 1841 > Ahg931204 jgi|Araly1|931204|scaffold_303661.1 Length=1927 Score = 230 bits (124), Expect = 5e-59 Identities = 692/954 (73%), Gaps = 87/954 (9%) Strand=Plus/Plus Query 866 TGGAGAGAGTCTGTGCCTCATCCTGATAAGAGAGTAGAATATGAGCTGTGGACTAATAGC 925 ||||||||| |||| || ||||||||| | | || || |||||| |||||||||||||| Sbjct 555 TGGAGAGAGGCTGTTCCGCATCCTGATGACCGTGTTGAGTATGAGTTGTGGACTAATAGC 614 Query 926 AATGATGAGTGTGGTGC-ACGGTGTGA--TGAACAGATGGACTTTGTCAA-GAACTTTAA 981 |||||||||||||| | | | ||||| || |||||| ||||| || || ||||| Sbjct 615 AATGATGAGTGTGGGGTTAAG-TGTGACATGTT--GATGGAGTTTGTGAAAGAT-TTTAA 670 Query 982 AGGT-CATGCTCAGATACTCGAAAAAGGCGGTTATACCGC-GTTTACG-CCGCATTATAT 1038 ||| | ||||||||| || || |||||||||| ||| || ||||| | || |||||||| Sbjct 671 GGGTGC-TGCTCAGATTCTTGAGAAAGGCGGTTTTAC-GCAGTTTA-GACCTCATTATAT 727 Query 1039 TACTTGGTTTTGCCCTTTT-CAGTTT-ATAAACAGTCC-ACATTGTAAGTCTCAGTGTAT 1095 |||||||| ||| ||| | | ||| | || || ||| ||||||||||||||||| Sbjct 728 TACTTGGTATTGTCCTCATGC--TTTCACGTTGAG-CCGACAGTGTAAGTCTCAGTGTAT 784 Query 1096 AAACCATGGGA-GGTATTGTGCTCCTGACCCTGAGGATAA-TTTCAGAGAAGGG-TATGA 1152 || | |||| |||| || |||||||| || || | | ||| || ||| ||||| Sbjct 785 CAATAA-GGGAAGGTACTGCGCTCCTGATCCAGAACAGGACTTT-AGCTC-GGGATATGA 841 Query 1153 AGGGAAAGATGTTGT-GCTTGAGAATCTGAGACAGCTTTGTGTGCATAGAGTTG-CGAAT 1210 || ||||| ||||| | | || ||| |||||||||||||||| | | || || ||||| Sbjct 842 TGGAAAAGACGTTGTTG-TGGAAAATTTGAGACAGCTTTGTGTTTACA-AGGTGGCGAAT 899 Query 1211 GAGAGTAGCAGGCCTTGGGTTTGGTGGGATTATGTTACCGATTTTCAT-TCTCGATGTTC 1269 || | | | || ||||| |||||||||||||| || ||||| || || ||||| | Sbjct 900 GAAACCGGGAAACCCTGGGTCTGGTGGGATTATGTCACTGATTTCCAGATCA-GATGTCC 958 Query 1270 GATGAAGGAGAAGAAATACAGCATAG-ATTGTGCTGAGAGTTATGA-ATCTTTAAGACTT 1327 ||||||||||||||||||| || || | |||||||| || | ||| || | | Sbjct 959 CATGAAGGAGAAGAAATACAACA-AGGAGTGTGCTGA---TTCCGTTATC---AA-A-TC 1009 Query 1328 TTTTCAGATTT-ACCTATTGAGAAGATCAAGA-AA-TGCATTGGTGATCCTGAGGCTGA- 1383 | || || || | || | | || | | || || || || || || || || ||||| Sbjct 1010 TCTTG-GAATTGA--TAGTAAAAA-A-CTTGACAAGTGTATGGGAGACCCCGATGCTGAC 1064 Query 1384 TACAGAGAA-CCAAGTTCTGA-G-AACTGAGCAAGTAT-CTCA-GATTGGCCGAGGAAAC 1438 | || || ||| ||||| | | || || |||| || |||| | ||||| ||| | Sbjct 1065 TTG-GACAATCCA-GTTCTTAAGGAA--GAACAAG-ATGCTCAAG-TTGGCA-AGGGTTC 1117 Query 1439 C-GGGGAGATGTTACGATATTGCCAACATTAGTCATCAATAAC-GCTCAATATCGAGGGA 1496 |||| |||||||| |||||||| || ||||| |||| ||| | || || ||||| | Sbjct 1118 AAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGA-CAGTACCGAGGCA 1176 Query 1497 -GATTGGAGAGAACCGCGGTTTTAAAGGCGATATGCGCTGGTTTTAATGAAAC-ATCGGA 1554 | |||||||| | || || | ||||| ||||| |||||||| | || || | | || Sbjct 1177 AG-TTGGAGAGGAGTGCAGTACTGAAGGCTCTATGCTCTGGTTTTGAGGAGACCA-CTGA 1234 Query 1555 GCCTGCCATTTGCTTAAACACAGGTCTAGAGACAAATGAGTGCCTT-GAAAACAATGGTG 1613 || || || ||| | | ||||| | | ||| |||| |||||| || || |||||||| | Sbjct 1235 ACCAGCTATATGCCTCAGCACAGATGTGGAGTCAAACGAGTGC-TTAGATAACAATGGCG 1293 Query 1614 GTTGCTGGCAGGATACAAA-AGCAAACATCACTGCTTGTCAAG-ACACATT-CAGAGGAA 1670 |||| ||||| |||| || ||| ||||| |||||||| |||| | ||||| | | |||| Sbjct 1294 GTTGTTGGCAAGATA-AATCAGCCAACATAACTGCTTG-CAAGGATACATTTC-GTGGAA 1350 Query 1671 GACTCTGCGAGTGTCCGGTTGTAAAAGGTGTTCAATATAA-AGGAGACGGGTACA-CTTC 1728 || | ||||||||||| || | ||||| |||| | | ||| || || |||| | | Sbjct 1351 GAGTATGCGAGTGTCCTACAGTTGATGGTGTGCAAT-TCACAGGGGATGGTTACAGCCAC 1409 Query 1729 ATGT-ACACCTTAT-GGGCCTGCGAGGTGTACTATGAACAATGGAGGTTGCTGG 1780 ||| | ||| | ||||| | ||| || || || |||||||||||||| ||| Sbjct 1410 -TGTGA-ACCA-AGCGGGCCAGGGAGATGCACAATCAACAATGGAGGTTGTTGG 1460 > Ahg938176 jgi|Araly1|938176|scaffold_502367.1 Length=1913 Score = 213 bits (115), Expect = 5e-54 Identities = 342/447 (77%), Gaps = 34/447 (8%) Strand=Plus/Plus Query 860 CTAGATTGGAGAGAGTCTGTGCCTCATCCTGATAAGAGAGTAGAATATGAGCTGTGGACT 919 |||||||||| ||||| || |||||||||||| || | ||||| ||||| ||||||||| Sbjct 538 CTAGATTGGACTGAGTCGGTTCCTCATCCTGATGAGCGTGTAGAGTATGAACTGTGGACT 597 Query 920 AATAGCAATGATGAGTGTGGTGCACG--GTGTGATGAA-CAGATGGACTTTGTCAAGAAC 976 |||||||||||||||||||| | | | ||||||| | ||||| || ||| |||| || Sbjct 598 AATAGCAATGATGAGTGTGG-GAA-GAAGTGTGAT-ACTCAGATTGAGTTTCTCAAAAA- 653 Query 977 TTT-AAAGGT-CATGCTCAGATACTCGAAAAAGGCGGTTATAC-CGCGTTTACGCCGCAT 1033 ||| ||||| | ||||||||| || || || || || |||| | ||| ||||| ||| Sbjct 654 TTTCAAAGGAGC-TGCTCAGATTCTTGAGAAGGGTGGGCATACTCA-GTTCACGCCACAT 711 Query 1034 TATATTACTTGGTTTTGCCCTTTTCAG-TTTATAAAC--AGTCCACATTGTAAGTCTCAG 1090 ||||| || |||| || ||| || ||| || | ||| ||| || ||||||||| Sbjct 712 TATATCACCTGGTACTGTCCTGA--AGCTTT-TACGCTGAGTAAACAGTGCAAGTCTCAG 768 Query 1091 TGTATAAACCATGGGAGGTATTGTGCTCCTGACCCTGAGGATAATTTCAGAGAAGGGTAT 1150 || || |||||||| ||||| ||||| ||||| |||||| | |||| | | |||||||| Sbjct 769 TGCATCAACCATGGAAGGTACTGTGCGCCTGATCCTGAGCAGGATTTTACAAAAGGGTAT 828 Query 1151 GAAGGGAAAG-ATGTTGT-GCTTGAGAATCTGA-GACAG-CTTTGTGTGC-ATAGAGTTG 1205 || || |||| ||||||| | || ||||||| | | ||| ||| | || | | ||||| | Sbjct 829 GATGG-AAAGGATGTTGTCG-TTCAGAATCT-ACGCCAGGCTT-GCGT-CTACAGAGT-G 882 Query 1206 C-GAATGAGAGTAGCAGGCCTTGGGTTTGGTGGGATTATGTTACCGATTTT-C-ATTCTC 1262 ||||||||| | | ||| ||||| |||||||| ||||| || || ||| | || | | Sbjct 883 ATGAATGAGAGCGGTAAGCCGTGGGTCTGGTGGGACTATGTGACTGACTTTGCCAT-C-C 940 Query 1263 GATGTTCGATGAAGGAGAAGAAATACA 1289 | ||| | |||||||||||||| |||| Sbjct 941 GGTGTCCAATGAAGGAGAAGAAGTACA 967 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90616692855 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5