BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20170.1
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492851 jgi|Araly1|492851|fgenesh2_kg.7__2284__AT4G20170.1 2488 0.0
Ahg494517 jgi|Araly1|494517|fgenesh2_kg.8__333__AT5G44670.1 1127 0.0
> Ahg492851 jgi|Araly1|492851|fgenesh2_kg.7__2284__AT4G20170.1
Length=1753
Score = 2488 bits (1347), Expect = 0.0
Identities = 1627/1756 (93%), Gaps = 44/1756 (3%)
Strand=Plus/Plus
Query 60 ttcttcttcttcctccgtttttttcatcttcttctctgtttcGAGAGATCCACTAGTGA- 118
||||||||||||| || ||||||| |||||||||||||||| ||||||||||||||||
Sbjct 29 TTCTTCTTCTTCCACC-ATTTTTTCTTCTTCTTCTCTGTTTCAAGAGATCCACTAGTGAC 87
Query 119 --AAGAGTCAGCACCATGGCCATGGTCAAAGAGAAAGAACAAAACACTAAAGACAAAAAA 176
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 TGAAGAGGCACCACCATGGCCATGGTCAAAGAGAAAGAACAAAACACTAAAGACAAAAAG 147
Query 177 CTCCTCGTCGGCGTCATTTGGAACTTCTCCGCCGAGCTCAAGCTCACTTTCATGGCGTTA 236
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 CTCCTCGTCGGCGTCATATGGAACTTCTCCGCCGAGCTCAAGCTCACTTTCATGGCGTTA 207
Query 237 CTTGTTCTCTGCACTTTAGCT-ACTCTCTTACCTTTCATACCTTCTTCATTCTCTCTCTC 295
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 208 CTTGTTCTATGCACTTTAG-TCACTCTCTTACCTTTCATACCTTCTTCATTCTCTCTCTC 266
Query 296 CACTTCCGATTTCCGCTTCTGCATCTCACGCTTCTCCTCCGCCGTCCCTCTCAACACCAC 355
||||||||||||||| ||||||||||||||||||||||||||| | || | | || |
Sbjct 267 CACTTCCGATTTCCGTTTCTGCATCTCACGCTTCTCCTCCGCCAT-CC-C-CGTCA--A- 320
Query 356 CACCACCGTAGAAGAATCATCATCCTCACCGTCACCGGAGAAGAACCTAGATCGAGTTTT 415
||||||||||||||| |||||||| | || ||||| | |||||||||||
Sbjct 321 CACCACCGTAGAAGATTCATCATCAT--CC-TCACC------G------GATCGAGTTTT 365
Query 416 GGATAACGGAGTTATTAAACGGACGTTTACTGGCTACGGCTCAGCAGCTTATAACTTCGT 475
||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 366 GGATAACGGAGTTGTTAAACGGACGTTTACTGGTTACGGCTCTGCAGCTTATAACTTCGT 425
Query 476 CTCAATGAGTGCTTACAGAGGCGGCGTTAACTCATTCGCCGTTATCGGATTATCATCAAA 535
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 426 TTCAATGAGTGCTTACAGAGGCGGCGTTAACTCTTTCGCCGTTATCGGATTATCATCAAA 485
Query 536 ACCATTACACGTGTACGGTCATCCTTCGTATAGATGCGAATGGGTCTCATTAGACCCGAC 595
||| ||||||||||||||||||||||| || ||||||||||||||||| || ||| ||||
Sbjct 486 ACCCTTACACGTGTACGGTCATCCTTCCTACAGATGCGAATGGGTCTCGTTTGACTCGAC 545
Query 596 TCAAGATCCGATTTCAACAACCGGGTTTAAAATCTTAACCGATTGGGGTTACGGACGGAT 655
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 546 TCAAGATCCGCTTTCAACAACCGGGTCTAAAATCCTAACCGATTGGGGTTACGGACGGAT 605
Query 656 CTACACAACAGTCGTCGTTAACTGTACTTTCTCATCAATCTCCGCCGTGAATCCACAAAA 715
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CTATACAACAGTCGTCGTTAACTGTACTTTCTCATCAATCTCCGCCGTGAATCCACAAAA 665
Query 716 CTCCGGTGGAACTCTCATCCTCCACGCCACCACCGGAGATCCAACTCTCAATCTCACCGA 775
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 666 CTCCGGCGGAACTCTCATCCTCCACGCCACCACCGGAGATCCAAATCTCAATCTCACCGA 725
Query 776 TTCAATCTCAGTCCTAACCGAACCTCCCAAATCCGTCGATTTCGATCTCTATAACTCCAC 835
||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 726 TTCAATCCCAGTCCTAACCGAATCTCCCAAATCCGTCGATTTCAATCTCTATAACTCCAC 785
Query 836 GAAGAAGACGAAGAAGTACGATTATCTCTATTGCGGATCGTCCT-TATACGGTAACCTAA 894
| | | ||||||||||||||| |||||||| || |||| || | ||||| ||| ||
Sbjct 786 ---G-A-A-GAAGAAGTACGATTACCTCTATTGTGGCTCGT-CTCTCTACGGAAACTTAT 838
Query 895 GTCCGCA-ACGAGTTAGAGAATGGATCGCTTACCACGTTAGATTCTTCGGTGAACGGTCA 953
||| || | || | |||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 839 CTCCACAGA-GAATCAGAGAATGGATCGCTTACCATGTTCGATTCTTCGGAGAACGGTCA 897
Query 954 CATTTCGTGCTACACGACGCCGGAGGGATTCATGAGGAAGTGTTCGAGGTTTTAAAGCCA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CATTTCGTGCTACACGACGCCGGAGGGATTCATGAGGAAGTGTTCGAGGTTTTAAAGCCA 957
Query 1014 TGGATTGAGCTAGGGAGAGTGACGTTACATGATATTAGAGATCAAGAACGATTCGATGGA 1073
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 TGGATTGAGCTAGGGAGAGTGACGTTACATGATATAAGAGATCAAGAACGATTCGATGGA 1017
Query 1074 TATTATCATAATCAGTTCATGATAGTGAATGATTGTTTGCATAGGTATAGATTCATGACG 1133
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 TATTATCATAATCAGTTCATGATTGTGAATGATTGTTTGCATAGGTATAGATTCATGACG 1077
Query 1134 AAGTGGATGTTCTTCTTTGATGTTGATGAGTTTTTACATGTTCCAGTGAAAGAGACGATT 1193
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1078 AAGTGGATGTTCTTCTTTGATGTTGATGAGTTTTTACATGTTCCGGTGAAAGAGACGATT 1137
Query 1194 TCGTCTGTGATGGAATCTTTGGAGGAATATTCTCAGTTTACTATTGAACAGATGCCTATG 1253
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1138 TCGTCGGTGATGGAATCTTTGGAGGAGTATTCTCAGTTTACTATTGAACAGATGCCTATG 1197
Query 1254 AGTAGTCGGATTTGTTATTCCGGTGATGGTCCGGCGAGAACTTACAGGAAATGGGGAATT 1313
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1198 AGTAGTCGGATTTGTTATTCCGGTGATGGTCCGGCCAGAACTTACAGGAAATGGGGAATT 1257
Query 1314 GAGAAACTGGCATATAGAGACGTCAAGAAGGTTCCAAGACGGGATCGAAAATACGCTGTC 1373
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1258 GAGAAACTGGCATATAGAGATGTCAAGAAGGTTCCAAGACGGGATCGAAAATACGCGGTC 1317
Query 1374 CAGCCGGAGAATGTATTCGCGACAGGCGTACACATGTCTCAGAATCTACAAGGGAAAACA 1433
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1318 CAGCCGGAGAATGTATTCGCGACAGGCGTTCACATGTCTCAGAATCTACAAGGGAAAACT 1377
Query 1434 TACCACAAGGCTGAAAGCAAAATCCGTTACTTCCACTACCATGGTTCGATCTCTCAGCGC 1493
||||| ||||| || |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1378 TACCATAAGGCCGAGAGCAAAATCCGTTACTTCCATTACCATGGTTCGATCTCTCAACGT 1437
Query 1494 CGCGAGCCTTGTCGTCAACTTTTTAACGATTCTCGAGTCGTGTTCGAGAACACTCCTTAT 1553
||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||
Sbjct 1438 CGCGAGCCTTGTCGTCACCTTTTTAACGATTCTCGAGTGGTATTCGAGAACACTCCCTAT 1497
Query 1554 GTGCTAGACACTACAATATGTGATGTTGGCCTTGCTGTGAGAACGTTCGAGTTGAGAACG 1613
||||| |||||||| || | || || |||||||||||||| ||||||||||||||||||
Sbjct 1498 GTGCTTGACACTACCATCCGCGACGTAGGCCTTGCTGTGAGGACGTTCGAGTTGAGAACG 1557
Query 1614 ATCGGTGATCGGCTGCTACGGACAAGACAATGAAGAGATGGCAAAAATGAATAGTGAATG 1673
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1558 ATCGGTGATCGGCTGCTTCGGACAAGACAATGAAGAGATGAAAAAAATGAATAGTGAATG 1617
Query 1674 TAATCAATCTTT-AG---A-AAGAAGAATTAGAAGGTGTTAAGATGAGTTACTTTGTATT 1728
|||||||||||| | | ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1618 TAATCAATCTTTTATTTTAGAAGAAGAATTAGAAGTTGTTAAGATGAGTTACTTTTTATT 1677
Query 1729 ATTTTCTTTTGGGGGTATATTCTTTTATTGTATCATATA-A-TTTGGGTAATGGGTTCAT 1786
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1678 GTTTTCTTTTGGGGGTATATTCTTTTATTGTATCATATATAATTTGGGTAATGGGTTCAT 1737
Query 1787 TAATACAGCTTGAAAA 1802
||||||||||| ||||
Sbjct 1738 TAATACAGCTTTAAAA 1753
> Ahg494517 jgi|Araly1|494517|fgenesh2_kg.8__333__AT5G44670.1
Length=1931
Score = 1127 bits (610), Expect = 0.0
Identities = 1054/1261 (84%), Gaps = 60/1261 (5%)
Strand=Plus/Plus
Query 419 TAACGGAGTTATTAAACGGACGTTTACTGGCTACGGCTCAGCAGCTTATAACTTCGTCTC 478
|||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 424 TAACGGCGTTATTAAACGGACGTTTACTGGTTACGGCTGGGCAGCTTATAACTTCGTCTT 483
Query 479 AATG-AGTGCTTACAGAGGCGGCGTTAACTCATTCGCCGTTATCGGATTATCATCAAAAC 537
|||| | | | |||||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 484 AATGAACT-CATACAGAGGCGGCGTTAACACATTCGCCGTTATCGGTTTATCATCTAAAC 542
Query 538 CA-TTACACGTGTACGGTCATCCTTCGTATAGATGCGAATGG-GTCTCATTAGACCCGAC 595
|| || ||||| |||| |||||| | || | ||||||||| || || || | || |
Sbjct 543 CACTT-CACGTCTACGCTCATCCAACTTACCGTTGCGAATGGATTC-CACTA-AACC-AA 598
Query 596 T-CAAGATCC-GATTTCAA-CAACCGGGT-TTAAAATCTTAACCGATTGGGGTTACGGAC 651
| | | | || ||||| || | | | ||| |||||||||||||||||||| |||||
Sbjct 599 TCCGATAACCGGATTTTAACCGA-C-GGTACCAAAATCTTAACCGATTGGGGATACGG-T 655
Query 652 GGA-TCTACACAACAGTCGTCGTTAACTGTAC-TTTCTCATCAATCTCCGCCG-TGAATC 708
|| | |||||||| |||||||| |||||||| |||| | |||| | ||| | | || |
Sbjct 656 AGAGTTTACACAACCGTCGTCGTAAACTGTACTTTTC-CGTCAACCACCG-TGATAAACC 713
Query 709 C-ACAAAACTCCGGTGGAACTC-TCATCCTCCACGCCACCACCGGAGATCCA-ACTCTCA 765
| | ||||| |||| || |||| || |||||||||| |||||||||||| | | || |
Sbjct 714 CTA-AAAACACCGGAGGTACTCTTC-TCCTCCACGCAACCACCGGAGATTTAGA-TCGGA 770
Query 766 ATC-TCACCGATTCAATCTCAGTCCTAACCGAACCTCCCAAA-TCCGTCGATTTCGA-TC 822
| | |||||||||||||| ||||||| |||||| || ||||| ||||||||||| | |
Sbjct 771 A-CATCACCGATTCAATCCCAGTCCTCACCGAAACT-CCAAACACCGTCGATTTC-ACCC 827
Query 823 TCTA-TAACT-CCA-CGAAGAAGACGAAGAAGTACGATTATCTCTATTGCGGATCGTCCT 879
|||| || | ||| || | | |||| |||||||||||||||||||||||||||| ||
Sbjct 828 TCTACGAA-TCCCATCGTCGCCG-CGAA-AAGTACGATTATCTCTATTGCGGATCGT-CT 883
Query 880 -TATACGGTAACCTAAGTCCGCA-ACGAGTTAGAGAATGGATCGCTTACCACGTTAGATT 937
| ||||| ||| || ||| || | || | |||||||||||||||||||| ||||||||
Sbjct 884 CTCTACGGAAACTTATCTCCACAGA-GAATCAGAGAATGGATCGCTTACCATGTTAGATT 942
Query 938 CTTCGGTGAACGGTCACATTTCGTGCTACACGACGCCGGAGGGA-TTCATGAGGAAGTGT 996
|||||| ||| | || ||||| || || |||||||||||||||| |||| ||||||||||
Sbjct 943 CTTCGGAGAAAGATCTCATTTTGTTCTTCACGACGCCGGAGGGATTTCA-GAGGAAGTGT 1001
Query 997 TCGAGGTTTTAAAGCCATGGATTGAGCTAGGGAGAGTGACGTTACATGATATTAGAGATC 1056
| |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||
Sbjct 1002 TTGAGGTTTTAAAGCCATGGATTGAGCTTGGGAGAGTGACGATACATGATATTAAAGATC 1061
Query 1057 AAGAACGATTCGATGGATATTATCATAATCAGTTCATGATAGTGAATGATTGTTTGCATA 1116
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1062 AAGAACGATTCGATGGTTATTATCATAATCAGTTCATGATTGTGAATGATTGTTTGCATA 1121
Query 1117 GGTATAGATTCATGACGAAGTGGATGTTCTTCTTTGATGTTGATGAGTTTTTACATGTTC 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GGTATAGATTCATGACGAAGTGGATGTTCTTCTTTGATGTTGATGAGTTTTTACATGTTC 1181
Query 1177 CAGTGAAAGAGACGATTTCGTCTGTGATGGAATCTTTGGAGGAATATTCTCAGTTTACTA 1236
| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1182 CGGTGAAGGAGACGATTTCGTCGGTGATGGAATCTTTGGAGGAATATTCTCAGTTTACTA 1241
Query 1237 TTGAACAGATGCCTATGAGTAGTCGGATTTGTTATTCCGGTGATGGTCCGGCGAGAACTT 1296
|||||||||||||||||||||||| | ||||||| ||||||||||||||| |||||||
Sbjct 1242 TTGAACAGATGCCTATGAGTAGTCAGCTTTGTTACGACGGTGATGGTCCGGCCAGAACTT 1301
Query 1297 ACAGGAAATGGGGAATTGAGAAACTGGCATATAGAGACGTCAAGAAGGTTCCAAGACGGG 1356
|||||||||||||| |||||||| |||| |||||||| || ||||| || ||| ||||||
Sbjct 1302 ACAGGAAATGGGGATTTGAGAAATTGGCGTATAGAGATGTGAAGAAAGTACCACGACGGG 1361
Query 1357 ATCGAAAATACGCTGTCCAGCCG-GAGAATGTATTCGCGACAGGCGTACACATGTCTCAG 1415
|| | |||||||| || || ||| | |||||||| |||||||| || ||||||||||||
Sbjct 1362 ATAGGAAATACGCGGTTCAACCGCGT-AATGTATTTGCGACAGGAGTTCACATGTCTCAG 1420
Query 1416 AATCTACAAGGGAAAACATACCACAAGGCTGAAAGCAAAATCCGTTACTTCCACTACCAT 1475
|||||||||||||| ||||| || | ||| ||| | || ||||| || || ||||||||
Sbjct 1421 AATCTACAAGGGAAGACATATCATAGGGCGGAAGGGAAGATCCGGTATTTTCACTACCAC 1480
Query 1476 GGTTCGATCTCTCAGCGCCGCGAGCCTTGTCGTCAACTTTTTAACGATTCTCG-AGTCGT 1534
||||| ||||| ||||| || |||||||||||||| |||| ||| | | |||| | ||||
Sbjct 1481 GGTTCAATCTCGCAGCGTCGTGAGCCTTGTCGTCATCTTTATAATGGTACTCGTA-TCGT 1539
Query 1535 GT--TCGAGAACACTCCTTATGTGCTAGACACTACAATATGTGATGTTGGCCTTGCTGTG 1592
| | || |||| |||||| || || || || ||||| | ||| |||| ||||| |||
Sbjct 1540 -TCAT-GAAAACAATCCTTACGTTCTTGATACCACAATGCGCGATATTGGTCTTGCGGTG 1597
Query 1593 A-GAACGTTCGAG-TTGAGAACGATCGGTGATCGGCT-GCT-ACGGACAAGACAATGAAG 1648
| || |||| ||| || || ||||| || ||||| || ||| | ||||||| || |||||
Sbjct 1598 AAGA-CGTTTGAGATT-AGGACGATTGGAGATCG-CTTGCTTA-GGACAAGGCAGTGAAG 1653
Query 1649 A 1649
|
Sbjct 1654 A 1654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74923511915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5