BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20330.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492835 jgi|Araly1|492835|fgenesh2_kg.7__2268__AT4G20330.1 1557 0.0
Ahg890092 jgi|Araly1|890092|Al_scaffold_0007_2078 713 0.0
Ahg942944 jgi|Araly1|942944|scaffold_603488.1 121 1e-26
> Ahg492835 jgi|Araly1|492835|fgenesh2_kg.7__2268__AT4G20330.1
Length=1096
Score = 1557 bits (843), Expect = 0.0
Identities = 982/1049 (94%), Gaps = 9/1049 (1%)
Strand=Plus/Plus
Query 104 CGTTGTATTCTTTCTCCAAGGAAGATGGCTCTAAAGGAACAGCTAGATAAATTCAACAAA 163
||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||||||
Sbjct 53 CGTTGTATTCTTTCTCCAAAGAAGATGGCTTTAAAGGAGCAGCTGGATAAATTCAACAAA 112
Query 164 CAGCAAGTGAAATGCCAATCTACTCTTTCGAGCATTGCTTCTTCCAGAGAAAGAACGA-G 222
||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| | |
Sbjct 113 CAGCAAGTGAAATGCCAATCTACGCTATCGAGCATTGCTTCTTCAAGAGAAAGAAC-AGG 171
Query 223 TTCTTCGAGGCAGAATGTGCCTTTGCCTGCGGCAATCACG-CAGAAGAAGCCTGATGCAG 281
|||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 172 GTCTTCGAGGCAGTCTGTGCCTTTGCCTGCGGCAATCA-GTCAGAAGAAGCCTGATGCAG 230
Query 282 CTCCTGTCAAGTTTTCAAGCGATACCGAGCGACTTCAGAACATTAACAACATTAGAAAAG 341
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 231 CTCCTGTCAAGTTTTCAAACGATACCGAGCGACTTCAGATTATTAACAACATTAGAAAAG 290
Query 342 CTCCTGTTGGAGCTCAAATCAAGCGTGTCATTGATCTTCTCTATGAGAGAAGGCTAGCCT 401
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 291 CTCCTGTTGGAGCTCAAATCAAGCGTGTCATTGATCTTCTCTTTGAGAAAAGGCTAGCCT 350
Query 402 TGACGCCAGAGCAAATAAATGAATGGTGTCATGTAGATATGCATGCTAATAAGGCTGTTT 461
| || ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||
Sbjct 351 TAACTCCAGAGCAAATAAATGAATTGTGTCATGTTGATATGCATGCCAATAAGGCTGTTT 410
Query 462 TTGATAGTTTAAGGAAGAATCCGAAAGCACATTATGATGGAAGAAGGTTCTCTTATAAGG 521
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 411 TTGATAGTTTGAGGAAGAATCCGAAAGCGCATTATGATGGAAGAAGGTTCTCTTATAAGG 470
Query 522 CTACGCACGATGTTAATGATAAGAACCAGCTTCTTTCATTGGTGAGAAAATACCTTGATG 581
|||| |||||||| || || ||||||||||||||||| |||||||| ||||||| |||||
Sbjct 471 CTACACACGATGTCAAGGACAAGAACCAGCTTCTTTCGTTGGTGAGTAAATACCCTGATG 530
Query 582 GGATTGCGGTGGTTGATCTCAAAGACGCTTACCCTAATGTAATGGAGGATTTGAAGGCTC 641
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 531 GGATTGCGGTGGTTGATCTCAAAGACGCTTACCCGAATGTAATAGAGGATTTGAAGGCTC 590
Query 642 TGAGTGCTTCAGGGGACATCTACTTGCTATCAAATTCACAAGAGGACATTGCATACCCAA 701
|||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 591 TGAGTGCTTCAGAGGACATCTGGTTGCTATCAAATTCACAAGAGGACATTGCGTACCCAA 650
Query 702 ATGATTTCAAGTGTGAGATTAAGGTTGATGACGAATTTAAAGCTCTATTCCGTGACATAA 761
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 ATAATTTCAAGTGTGAGATTAAGGTTGATGACGAATTTAAAGCTCTATTCCGTGACATAG 710
Query 762 ACATCCCGAACGACATGCTGGACGTGGAGAAGGAGCTGCTGAAAATCGGTTTGAAGCCGG 821
||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 711 ACATCCCGAGCGACATGCTGGACGTGGAGAAGGAGCTGCTGAAGATTGGTTTGAAGCCGG 770
Query 822 CGACAAACACTGCAGAGAGGAGAGCTGCTGCACAGACGCATGGCATATCGAATAAACC-A 880
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct 771 CGACAAACACTGCAGAGAGGAGAGCTGCTGCACAGACCCATGGCGTATCGAATAAACCGA 830
Query 881 AAGGATAAGAAGAAGAAGAAACAAGAGATCAGCAAGAGAACCAAACTCACCAATGCCCAT 940
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AA-GATAAGAAGAAGAAGAAACAAGAGATCAGCAAGAGAACCAAACTCACCAATGCCCAT 889
Query 941 CTTCCCGAGCTTTTCCAGAACCTTAACGGCAGCAGTTCCCGGAACTGAACCTCATAAATG 1000
||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 890 CTTCCCGAGCTTTTCCAGAGCCTTAATGCCAGCAGTTCCCGGAACTGAACCTCATAAATG 949
Query 1001 GATGATCATGCGGTTCTAAATTCATATTGAGCCTGAATTTTCTTGTAATTGTAATAATTG 1060
|||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||| | |
Sbjct 950 GATGATCATGCGGTTCAAAACTCAAATTGATCCTGAATTTTCTTGTAATTGTAAT--T-G 1006
Query 1061 TTACAATCTTTAGTTTACAAATTACAATGATTCTCATGTATTCTCACGACATTTGCTAGA 1120
|||| ||||| || ||||||||||||||| || |||||||||||||| ||||||| ||||
Sbjct 1007 TTACGATCTTGAGCTTACAAATTACAATGGTTTTCATGTATTCTCACAACATTTGTTAGA 1066
Query 1121 AATATAGAATAAACACATTTGGGAGTTGG 1149
|||||||||||||||||||| |||||||
Sbjct 1067 AATATAGAATAAACACATTTATGAGTTGG 1095
Score = 93.5 bits (50), Expect = 3e-18
Identities = 64/70 (91%), Gaps = 3/70 (4%)
Strand=Plus/Plus
Query 4 TCTATCGTCGATAAAGCAAAAAATCAAATCAAGcttcttcttcgatcttcttc-ttcgat 62
||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 1 TCTCTCGTCGATAAAGCAAAAAATCAAATCAAGCTTCTTCTTCGATCTTCTTCGTT-G-T 58
Query 63 cttcttcCTC 72
||||| |||
Sbjct 59 ATTCTTTCTC 68
> Ahg890092 jgi|Araly1|890092|Al_scaffold_0007_2078
Length=858
Score = 713 bits (386), Expect = 0.0
Identities = 732/889 (82%), Gaps = 63/889 (7%)
Strand=Plus/Plus
Query 128 ATGGCTCTAAAGGAACAGCTAGATAAATTCAACAAACAGCAAGTGAAATGCCAATCTACT 187
||||||||| |||| |||||| |||| ||||| |||||||||| |||||||||||||||
Sbjct 1 ATGGCTCTACAGGAGCAGCTAAATAAGTTCAATAAACAGCAAGAGAAATGCCAATCTACG 60
Query 188 CTTTCGAGC---ATTGCTTCTTCCAGAGAAAGAACGAGTTCTTCGAGGCAGAATGTGCCT 244
||||||||| |||||||||| | ||||||| | |||||||| | | ||
Sbjct 61 CTTTCGAGCATTATTGCTTCTT-C-----AAGAACGGGGCCTTCGAGG--TCA--T-CC- 108
Query 245 TTGCCTGCGGCAATC-ACGCAG-AAGAAGCCTGATGCAGCTCCTGTCAAGTTTTCAAG-C 301
| ||||| |||| | || ||| |||||||| |||||| || || ||||||||| ||
Sbjct 109 GTACCTGCAGCAA-CAAC-CAGTCAGAAGCCTAATGCAGTTCGTGGCAAGTTTTC-AGAA 165
Query 302 GATACCGAGCGA-CTTCAGAACATTAACAACATTAGAAA-AGCTCCTGTTGGAGCTCAAA 359
|||| ||| | |||||| ||||||||||||| ||||| || | |||||||||||||||
Sbjct 166 AATACAAAGC-AGCTTCAGCACATTAACAACATAAGAAACAG-TGCTGTTGGAGCTCAAA 223
Query 360 TCAAGCGTGTCATTGATCTTCTCTATGAGAGAAGGCTAGCCT-TGACGCCAGAGCAAATA 418
| |||| ||||||||||| | | | || ||| |||| || | ||| | |||||||||
Sbjct 224 TGAAGCTTGTCATTGATC-T-T-T-TG-CTTAAGCCTAG-CTAT-ACGGCGGAGCAAATA 276
Query 419 AATGAATG-GTGTCATGTAGATATGCA-TGCTAATAAGGCTGTTTTTGATAGTTTAAGGA 476
|||||| | ||| |||| |||||| | ||| ||||||||||||||| ||||||| ||||
Sbjct 277 AATGAA-GCTTGTTATGTTGATATG-ACTGCCAATAAGGCTGTTTTTAATAGTTTGAGGA 334
Query 477 AGAATCCGAAAGCACATTATGATGGAAG---AAGGTTCTCTTATAAGGCTACGCACGATG 533
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 335 AGAATCCGAAAGTGCATTATGACGGAAGATCAAGGTTCTCTTATAAGGCTACGCACGATA 394
Query 534 TTAATGATAAGAACCAGCTTCTTTCATTGGTGAGA-AAATACCT-TGATGGGATTGCGGT 591
| || || ||||| ||||||||||| || |||| | |||| ||| | ||| ||||| ||
Sbjct 395 TCAAGGACAAGAAGCAGCTTCTTTCGTTTGTGA-ATAAAT-CCTCTAATGTGATTGATGT 452
Query 592 GGTTGATCTCAAAGACGCTTACCCTAATGTAATGGAGGATTTGAAGGCTCTGAGTGCTTC 651
||||||||||||||| |||||||||||||| ||||| |||||| ||||| ||| |||||
Sbjct 453 GGTTGATCTCAAAGATGCTTACCCTAATGTCATGGAAGATTTGCAGGCTTTGAAAGCTTC 512
Query 652 AGGGGACATCTAC---TTGCTATC-AA-A----TTCACAAGAGGACATTGCATACCCAAA 702
||| ||||||| | |||| ||| || | |||| |||||| |||| || |||||
Sbjct 513 AGGAGACATCTTCTGGTTGCCATCAAACACTGGTTCAAAAGAGGGTATTGTGTATCCAAA 572
Query 703 TGATTTCAAGTGTGAGATTAAGGTTGATGACGAATTTAAAGCTCTATTCCGTGACATAAA 762
|||||| |||| | | ||| ||||||||||| |||||||||| ||||| |||||| |
Sbjct 573 TGATTTAAAGTATCCG---AAGATTGATGACGAACTTAAAGCTCTTTTCCGCGACATAGA 629
Query 763 CATCCCGAACGACATGCTGGACGTGGAGAAGGAGCTGCTGAAAATCGGTTTGAAGCCGGC 822
||| |||| ||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 630 CATTCCGAGCGACATGCTTGACGTGGAGAAGGAGCTGCTGAAGATTGGTTTGAAGCCGGC 689
Query 823 GACAAACACTGCAGAGAGGAGAGCTGCTGCACAGACGC-ATGGCATATCGAATAAACC-A 880
|||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||| |
Sbjct 690 GACAAACACTGCAGAGAGGAGAGCTGCTGCACAG-CTCCATGGCGTATCGAATAAACCGA 748
Query 881 AAGGATAAGAAGAAGAAGAA-A--CAAGAGATCAGCAAGAGAACCAAACTCACCAATGCC 937
||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 749 AAG-ATAAGAAGAAGAAGAAGAAACAAGAGATCAGCAAGAGAACCAAACTCACCAATTCC 807
Query 938 CATCTTCCCGAGCTTTTCCAGAACCTTAACGGCAGCAGTTCCCGGAACT 986
||| |||||||||| ||||||| |||||||| ||||||||| ||||||
Sbjct 808 CATATTCCCGAGCTCTTCCAGAGCCTTAACGCCAGCAGTTCTGGGAACT 856
> Ahg942944 jgi|Araly1|942944|scaffold_603488.1
Length=278
Score = 121 bits (65), Expect = 1e-26
Identities = 83/92 (90%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 899 AAACAAGAGATCAGCAAGAGAACCAAACTCACCAATGCCCATCTTCCCGAGCTTTTCCAG 958
|||||| |||||||||||||||||||||||||||||| ||||||| | ||||| ||||||
Sbjct 123 AAACAACAGATCAGCAAGAGAACCAAACTCACCAATGTCCATCTTGCAGAGCTCTTCCAG 64
Query 959 AACCTTAACGGCAGCAGTTCCCGGAACTGAAC 990
||||||| || ||||||||||||| ||| |||
Sbjct 63 AACCTTACCGCCAGCAGTTCCCGGGACTAAAC 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5