BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20340.1
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354720 jgi|Araly1|354720|fgenesh1_pg.C_scaffold_7001893 1764 0.0
Ahg918994 jgi|Araly1|918994|scaffold_100275.1 1306 0.0
Ahg946115 jgi|Araly1|946115|scaffold_702344.1 422 5e-117
> Ahg354720 jgi|Araly1|354720|fgenesh1_pg.C_scaffold_7001893
Length=1452
Score = 1764 bits (955), Expect = 0.0
Identities = 1074/1129 (95%), Gaps = 17/1129 (2%)
Strand=Plus/Plus
Query 120 ATGGACAAATCAATCACGGTGGTGCGGAAAACCGTTGTGCTCGAGCCGTTTGTCAAGCTG 179
||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGAAAAATCAATCACGGTGGTGCAGAAAACCGTTGTGCTCGAGCCGTTTATCAAGCTG 60
Query 180 GTGAGGCTTTTAGTAAGGATTTTCTATGACAATTATACTCCGGAAAGCGATAATCAGCAG 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGAAGCTTTTAGTAAGGATTTTCTATGACAATTATACTCCGGAAAGCGATAATCAGCAG 120
Query 240 AAATCTGTGAAAAATGTTAAAGGTAGTGCTGTTATCGTGCTGGACGCGCTTACGAGGCGG 299
||||||| |||||||| | ||| | ||||||||||||||||||||||||| ||||||||
Sbjct 121 AAATCTGCAAAAAATGTCAGAGGGACTGCTGTTATCGTGCTGGACGCGCTTGCGAGGCGG 180
Query 300 CAATGGGTTAGAGAAGAAGACTTGGCAAAAGAGGTGAAGCGGAATGCCAAGGAGCTTCGA 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 181 CAATGGGTTAGAGAAGAAGACTTGGCAAAAGAGTTGAAGCGGAATGCCAAGGAACTTCGA 240
Query 360 AAATTAATAAGACATTTTGAAGAACAAAAATTTGTCATGCGTTACCACAGGAAAGAGACT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAATTAATAAGACATTTTGAAGAACAAAAATTTGTCATGCGTTACCACAGGAAAGAGACT 300
Query 420 GCAAAGCGTGCGAAGATGTATAGTTATGCAGTGGGTGGTACAACTGATGGCCGAGCAGAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCAAAGCGTGCGAAGATGTATAGTTATGCAGTGGGTGGTACAACTGATGGCCGAGCAGAG 360
Query 480 GACAATGTTAAGTTCCACACGCACTCGTATTGCTGTCTTGATTATGCACAGATATATGAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GACAATGTTAAGTTCCACACGCACTCGTATTGCTGTCTTGATTATGCACAGATATATGAT 420
Query 540 ATTGTTCGTTATAAACTGCACCGGCTCAAGAAAAAGTTCAAAGATGAACTAGAAGA-CAG 598
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |
Sbjct 421 ATTGTTCGTTATAAACTGCACCGGCTCAAAAAAAAATTCAAAGATGAACTAGAAGATC-G 479
Query 599 AAATACTGTTCAGGAGTATGGCTGTCCTAACTGCAAAAGAAAATATAATGCACTGGATGC 658
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 AAATACTGTTCAGGAGTATGGCTGTCCTAACTGCAAAAGAAAGTATAATGCACTGGATGC 539
Query 659 CCTGAGATTAATTTCTATGGAAGACGATTCTTTTCATTGTGAAAATTGCAATGGTGAACT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCTGAGATTAATTTCTATGGAAGACGATTCTTTTCATTGTGAAAATTGCAATGGTGAACT 599
Query 719 TGTTATGGAATGTAACAAGCTAATTTCCGAAGAAGTAGTAGATAGAGGTGACAATGCAAG 778
|||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||
Sbjct 600 TGTTATGGAATGTAACAAACTAACTTCCGAAGAAGTAGTAGATGGAGGTGACAATGCAAG 659
Query 779 GAGACGGCAGCGGGAGAAAGTAAAAGTTTGGCTTCAGGATTTGGAGGGTGAACTGAAACC 838
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 660 GAGACGGCAGCGGGAGAAAGTAAAAGTTTGGCTTCAGGATTTGGAGGTTGAACTGAAACC 719
Query 839 CCTGATGGAACTAATAAATAGAGTAAAAGACCTACCGTTCCCTGCCTTTGAACCTTTTCC 898
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 TCTGATGGAACTAATAAATAGAGTAAAAGACCTACCATTCCCTGCCTTTGAACCTTTTCC 779
Query 899 GGCATGGGAAGCTCGTGCAGCTAAGGCTGCTCGTGAAAATGGTGATTTTAACCCTGA-TG 957
||||||||||| |||||| ||||||||||||||||||||||||||| ||||| | | ||
Sbjct 780 GGCATGGGAAGTTCGTGCTGCTAAGGCTGCTCGTGAAAATGGTGATCTTAACT-TAAATG 838
Query 958 ATCCTTCAAGGTCTTTGGGCGGATATGGTTCAACACCAATGCCATTTCTGGGAGAGACAA 1017
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 ATCCTTCAAGGTCACTGGGCGGGTATGGTTCAACACCAATGCCATTTCTGGGAGAGACAA 898
Query 1018 AGGTTGAGGTTAACCTTGGTGAAGGAAATGAAGATGTCACATCTACAGGTGGAGATTCTA 1077
|||||||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||
Sbjct 899 AGGTTGAGGTTAACCTTGGTGAAGGAAAAGAAGATGTCAAATCGAAAGGTGGAGATTCTA 958
Query 1078 GCCTGAAAATGTTGCCTCCATGGATGATCAAGCAAGGCATGAAGCTGACCGAGGAACAAA 1137
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 GTCTGAAAATGTTGCCTCCATGGATGATCAAGCAAGGCATGAATCTGACCGAGGAACAAA 1018
Query 1138 GAGGAGAGATGAGACAGGAAGCAAATGTTGATGGAGAAGCAGCAAAACTTTCAGATGACA 1197
||||||||||||||||||||||||||| ||||||| | ||||||||||||
Sbjct 1019 GAGGAGAGATGAGACAGGAAGCAAATGCTGATGGA----C--------TTTCAGATGACA 1066
Query 1198 AGAAATCAGTCATGGAAAATGGCGATGATAATAAAGATTTGAAGG-ATG 1245
|||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1067 AGAAATCAGTCATGGAAAATGGCGATGATAATAAGGATTTGAAGGCATG 1115
Score = 455 bits (246), Expect = 5e-127
Identities = 290/310 (94%), Gaps = 8/310 (3%)
Strand=Plus/Plus
Query 1242 GATGAGTATCTCAAAGCTTACTACGCCGCTATAATGGAGCAGCAAAAGCTTGCTGCAAAG 1301
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1147 GATGAGTATCTCAAAGCTTACTACGCCGCTATACTGGAGCAGCAAAAGCTTGCTGCAAAA 1206
Query 1302 CTGAATGAGCAAGAATCCGCAGGCGAATCAACAACCACTGACATTGAATCGGCTACTACA 1361
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 CTGAATCAGCAAGAATCCGCAGGCGAATCAACAACCACTGACATTGAATCGGCTACTACA 1266
Query 1362 TACTCAGATCGTCAAGTTGGTATGAAGTCCAAACGCGAAGA-G--GAAGAAGAAGATGTT 1418
| |||||||||||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1267 TCCTCAGATCGTCAGGTTGGTATGAAGTCCAAACGCGAAGAGGAAGAAGAAGAAGATGTT 1326
Query 1419 GAATGGGAAGAAGGAGCTTCTGTTG-CAGCAAATGGAAACTACAAGGTGGATTTGAATGT 1477
|||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1327 GAATGGGAAGAACAAGCTTCTG-TGACAGCAAATGGAAACTACAAGGTGGATTTGAATGT 1385
Query 1478 GGAAGCAGAAGAGGCAGAAGAAAAAGAAGATGGAGACGAAGATGACGACATCGACTGGGA 1537
|||||||||||||||||||||||||||||| | ||| || |||||| | |||| |||||
Sbjct 1386 GGAAGCAGAAGAGGCAGAAGAAAAAGAAGAAGAAGATGACGATGAC-A--TCGATTGGGA 1442
Query 1538 AGAAGGCTGA 1547
||||||||||
Sbjct 1443 AGAAGGCTGA 1452
> Ahg918994 jgi|Araly1|918994|scaffold_100275.1
Length=1488
Score = 1306 bits (707), Expect = 0.0
Identities = 1235/1481 (83%), Gaps = 72/1481 (5%)
Strand=Plus/Plus
Query 110 GTTATATTCCATGGACAAATCAATCACGGTGGTGCGGAAAACCGTTGTGCTCGAGCCGTT 169
|||| | |||||||| |||||| | | | |||| |||| ||||||||||| |||| ||
Sbjct 17 GTTA-AGTCCATGGAAAAATCAGGC-C-CT-GTGCAGAAAGCCGTTGTGCTCCAGCCATT 72
Query 170 TGTCAAGCTGGTGAGGCTTTTAGTAAGGATTTTCTATGACAATTATACTCCGGAAAGCGA 229
||||||||||||||||||| | | ||| ||||||||| |||||||| || |||||||
Sbjct 73 TGTCAAGCTGGTGAGGCTTGTCGCGAGGGCTTTCTATGATGATTATACTACGAAAAGCGA 132
Query 230 TAATCAGCAGAAATCTGTGAA-AAATG-TTA-A-AGGTAGTGCTGTTATCGTGCTGGACG 285
| ||||||||||||||| || || || | | ||| | ||| | | | ||||| ||||
Sbjct 133 TCATCAGCAGAAATCTG-CAAGAAGTGACAACAGAGGGATTGCCGCTGTGGTGCTAGACG 191
Query 286 CGCTTACGAGGCGGCAATGGGTTAGAGAAGAAGACTTGGCAAAAGAGGTG-AAGCGGAAT 344
| || |||||||||||||||||||||||||||| ||||||||||| || || | |
Sbjct 192 CCCTGGCGAGGCGGCAATGGGTTAGAGAAGAAGATTTGGCAAAAGATTTGCAA-TTGCAC 250
Query 345 GCCAAGGAGCTTCGAAAATTAATAAGACAT-TTTGAAGAACAAAAATTTG-TCATGCGTT 402
|||||| | ||||||||| ||||||||| | ||||||||| |||| ||| | ||||||
Sbjct 251 GCCAAGCAACTTCGAAAAATAATAAGAC-TCTTTGAAGAA-GAAAAGTTGATTATGCGTG 308
Query 403 ACCACAGGAAAGAGACTGCAAAGCGTGCGAAGATGTATAGTTATGCAGTGGGTGGTACAA 462
||||| ||||||||||||||||| | || |||||||||||| |||||||| || |||||
Sbjct 309 ACCACCGGAAAGAGACTGCAAAGGGGGCAAAGATGTATAGTGCTGCAGTGGCTGCTACAA 368
Query 463 CTGATGGCCGAGCAGAGGACAATGTTAAG-TTCCACACGCACTCGTATTGCTGTCTTGAT 521
|||||||||||||||||||||| |||||| || ||||| ||||||||||| ||||| |||
Sbjct 369 CTGATGGCCGAGCAGAGGACAAAGTTAAGCTT-CACACCCACTCGTATTGTTGTCTCGAT 427
Query 522 TATGCACAGATATATGATATTGTTCGTTATAAACTGCACCGGCTCAAGAAAAA-GTTCAA 580
||||||||||||| |||| ||||||||| || |||||| ||| | || ||||| | ||||
Sbjct 428 TATGCACAGATATGTGATGTTGTTCGTTTTAGACTGCATCGGATGAA-AAAAAGGCTCAA 486
Query 581 AGATGAACTAGAAGA-CAGAAATACTGTTCAGGAGTATGGCTGTCCTAACTGCAAAAGAA 639
|||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||
Sbjct 487 AGATGAGCTAGAAGATAAG-AATACTGTTCAGGAGTATGGCTGTCCTAACTGCCAAAGAA 545
Query 640 AATATAATGCACTGGATGCCCTGAGATTAATTTCTATGGAAGACGATTCTTTTCATTGTG 699
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 546 AATATAATGCGCTGGATGCTCTGAGATTAATTTCTATGGAAGACGATTCTTTTCATTGTG 605
Query 700 AAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAGCTAATTTCCGAAGAAGTAGTAG 759
||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || |
Sbjct 606 AAAATTGCAATGGTGAACTTGTTGTGGAATGTAACAAGCTAACTTCCGAAGAAGTTGTTG 665
Query 760 ATAGAGGTGACAATGCAAGGAGACGGCAGCGGGAGAAAGTAAAAGTT-TGGCTTCAGGAT 818
|| ||| ||| |||||||||||||||| |||||| ||| ||||| | || |||||| |
Sbjct 666 ATGGAGATGATAATGCAAGGAGACGGCGGCGGGAAAAACTAAAAAATATG-CTTCAGAAG 724
Query 819 TTGGAGGGTGAACTGAAACCCCTGATGGAACTAAT-AAATAGAGTAAAAGACCTACCG-T 876
||||||| | || ||||||| |||||||| | | | ||||||||||||||||||||| |
Sbjct 725 TTGGAGGTTCAAATGAAACCTCTGATGGATC-AGTTAAATAGAGTAAAAGACCTACCAAT 783
Query 877 TCCCTGCCTTTGAACCTTTTCCGGCATGGGAAGCTCGTGCAGCTAAGGCTGCTCGTGAAA 936
||| || |||| | |||||| ||||||||| ||||||||||||| ||||||||| | |
Sbjct 784 TCC-TGAATTTGGATCTTTTCTGGCATGGGAGGCTCGTGCAGCTATGGCTGCTCGCGCGA 842
Query 937 ATGGTGATTTTAACCCTGATGATCCTTCAAGGTCTTTGGGCGGATATGGTTCAACACCAA 996
|||||||| |||||||| ||||||||| ||||| | | || ||||||||||||||||
Sbjct 843 ATGGTGATCTTAACCCTAATGATCCTTTGAGGTCACAGAGTGGGTATGGTTCAACACCAA 902
Query 997 TGCCATTTCTGGGAGAGACAAAGGTTGAGGTTAACCTTGGTGAAGGAAATGAAGATGTCA 1056
|||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 903 TGCCATTTCTCGGAGAGACAAAGGTTGAGGTTAACCTTGGCGATGGAAACGAAGATGTTA 962
Query 1057 CATCTACAGGTGGAGATTCTAGCCTGAAAATGTTGCCTCCATGGATGATCAAGCAAGGCA 1116
||||| |||||||||||| || |||||| | ||||||||||||||||||||| |||| |
Sbjct 963 AATCTAAAGGTGGAGATTCCAGTCTGAAAGTCTTGCCTCCATGGATGATCAAGGAAGGAA 1022
Query 1117 TGAAGCTGACCGAGGAACAAAGAGGAGAGATGAGACAGGAAGCAAATGTTGATGG----- 1171
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1023 TGAATCTGACCGAGGAACAAAGAGGAGAGATGAGACAGGAAGCAAAGGTTGATGGTGGCT 1082
Query 1172 -A-GA--AGCAGCAAAACTTTCAGATGACAAGAAATCAGTCA-TGGAAAATGGCGATGAT 1226
| || |||||||||||||||||| ||||||||||||| || |||||| ||| |||||
Sbjct 1083 CAAGAGGAGCAGCAAAACTTTCAGAAGACAAGAAATCAGCCAGTGGAAA-TGGAGATGAG 1141
Query 1227 AATAAAGATTTGAAGGATGAGTATCTCAAAGCTTACTACGCCG--CTATAATGGAGCAGC 1284
|| ||||||||||||||||||||||||||||||||| | || | || ||||||
Sbjct 1142 AAG---GATTTGAAGGATGAGTATCTCAAAGCTTACTACTTAGAACT-TC-TGAAGCAGC 1196
Query 1285 AAAAGCTTGCTGCAA-AGCTGAA-TGAGCAAGAATCCGCAGGCGAATCAACAACCACTGA 1342
|| |||||||||||| | | ||| | | ||||||||||| ||||||||| | | |||
Sbjct 1197 AAGAGCTTGCTGCAAGA-C-GAAATCAACAAGAATCCGCTGGCGAATCAGCTTC---TGA 1251
Query 1343 CATTGAATCGGCTACTACATACTCAGATCGTCAAGTTGGTATGAAGTCCAAACGCGAAGA 1402
||| | | || |||||||| ||||| |||||| ||| |||||||| ||||||| |||||
Sbjct 1252 CATCCAGTTGGGTACTACATCCTCAGGTCGTCAGGTTAGTATGAAGGCCAAACGTGAAGA 1311
Query 1403 -G--GA--A-GA--A-GA--A-GA---TGTTGAATGGGAAGAAGGAG-CTTCTGTTGCAG 1446
| || | || | || | || |||||||||||||||| || || |||||||||
Sbjct 1312 AGAAGATGAAGACGAAGATGAAGAAGATGTTGAATGGGAAGAAA-AGGCTCCTGTTGCAG 1370
Query 1447 CAAATGGAAACTACAAGGTGGATTTGAATGTGGAAGCAGAAGAGGCAGAAGAAAAAGAAG 1506
| |||||||||||||||||||| ||||||||||||||||||| | | | ||||||
Sbjct 1371 CTAATGGAAACTACAAGGTGGACTTGAATGTGGAAGCAGAAGCTTCGGGTGGTGAAGAAG 1430
Query 1507 ATGGAGACGAAGATGACGACATCGACTGGGAAGAAGGCTGA 1547
| | ||| ||||| ||||||||| |||||||||||||||
Sbjct 1431 AAGAAGAGGAAGA---CGACATCGATTGGGAAGAAGGCTGA 1468
> Ahg946115 jgi|Araly1|946115|scaffold_702344.1
Length=865
Score = 422 bits (228), Expect = 5e-117
Identities = 349/404 (86%), Gaps = 22/404 (5%)
Strand=Plus/Plus
Query 567 AAGAAAAAGTTCAAAGATGAACTAGAAGA-CAGAAATACTGTTCAGGAGTATGG-CTGTC 624
||||||||||||||| | ||||||||||| || ||| |||||| |||||||| | |||
Sbjct 25 AAGAAAAAGTTCAAACACGAACTAGAAGATAAG-GATAATGTTCAAGAGTATGGAC-GTC 82
Query 625 CTAACTGCAAAAGAAAATATAATGCACTGGATGCCCTGAGATTAATTTCTATGGAAGACG 684
||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| ||
Sbjct 83 CTAACTGCAAAAGAAAATATAGTGCACTGGATGCTCTGAGATTATTTTCTATGGAAGGCG 142
Query 685 ATTCTTTTCATTGTGAAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAGCTAATTT 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 143 ATTCTTTTCATTGTGAAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAGCTAACTT 202
Query 745 CCGAAGAAGTA---GTAGATAGAGGTGACAATGCAAGGAGACGGCAGCGGGAGAAAGTAA 801
|| |||||||| |||||| || ||||||||||||||||||||| | || | | |||
Sbjct 203 CCCAAGAAGTACTAGTAGATGGAAGTGACAATGCAAGGAGACGGC-G-GG-ATCATCTAA 259
Query 802 AAG-TTTGGCTTCAGGATT-TGGAGGGT-GAACTGAAACCCCTGATGGAAC-TAATAAAT 857
||| |||| |||||| ||| |||| | | || |||||||| |||||||| | || ||||
Sbjct 260 AAGATTTG-CTTCAG-ATTATGGAAGTTCGA-CTGAAACCTCTGATGGATCATA-TAAAC 315
Query 858 AGAGTAAAAGACCTACCG-TTCCCT-GCCTTTGAACCTTTTCCGGCATGGGAAGCTCGTG 915
||| |||||||||||||| |||| | || |||||| |||||||||||||||| |||||||
Sbjct 316 AGAATAAAAGACCTACCGGTTCC-TAGC-TTTGAATCTTTTCCGGCATGGGAGGCTCGTG 373
Query 916 CAGCTAAGGCTGCTCGTGAAAATGGTGATTTTAACCCTGATGAT 959
|||||| | ||||||||||||||||||| ||| ||||||||
Sbjct 374 CAGCTACGTATGCTCGTGAAAATGGTGATCGTAATTCTGATGAT 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5