BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20360.1
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946135 jgi|Araly1|946135|scaffold_702364.1 2425 0.0
Ahg948643 jgi|Araly1|948643|scaffold_800530.1 1242 0.0
> Ahg946135 jgi|Araly1|946135|scaffold_702364.1
Length=1475
Score = 2425 bits (1313), Expect = 0.0
Identities = 1429/1484 (96%), Gaps = 11/1484 (1%)
Strand=Plus/Plus
Query 64 GCTCTCCAATTCCATCTTCCCATGGCGATTTCGGCTCCAGCCGCTTGttcttcctcctct 123
||||||||| ||| |||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 GCTCTCCAAATCCGTCTT-CCATGGCGATTTCGGCTCCAGCCGCTTGTTCTTCTTCCTCT 59
Query 124 agaattctctgttcctactcctctccttctccttctctctGTCCCGCCATTTCCACCTCT 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGACTTCTCTGTTCCTACTCCTCTCCTTCTCCTTCTCTCTGTCCCGCCATTTCCACCTCT 119
Query 184 GGTAAACTCAAAACCCTAACTCTCTCTTCCTCCTTCCTCCCTTCTTACTCATTAACCACC 243
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGTAAGCTCAAAACCCTAACTCTCTCTTCCTCCTTCCTCCCTTCTTACTCATTAACCACT 179
Query 244 ACCTCCGCTTCTCAATCCACTCGTCGCTCCTTCACCGTCCGCGCCGCTCGTGGAAAGTTC 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACCTCCGCTTCTCAATCCACTCGTCGCTCCTTCACCGTCCGCGCCGCTCGTGGAAAGTTC 239
Query 304 GAGAGGAAGAAGCCTCATGTCAACATCGGAACCATCGGTCATGTTGACCATGGGAAAACT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 240 GAGAGGAAGAAGCCTCATGTCAACATCGGAACCATCGGTCATGTTGACCATGGTAAGACT 299
Query 364 ACTTTAACCGCAGCTCTAACCATGGCTCTCGCTTCCATTGGTTCCAGCGTCGCTAAAAAG 423
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 300 ACTTTAACCGCAGCTCTCACCATGGCTCTTGCTTCAATTGGTTCCAGCGTCGCCAAAAAG 359
Query 424 TACGACGAGATTGACGCTGCGCCGGAGGAGAGAGCTCGTGGTATCACAATCAACACTGCT 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TACGACGAGATTGACGCTGCGCCGGAGGAGAGAGCTCGTGGTATCACAATCAACACTGCT 419
Query 484 ACTGTTGAGTACGAGACTGAGAATCGTCACTACGCTCACGTTGATTGTCCTGGTCACGCT 543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACTGTGGAGTACGAGACTGAGAATCGTCACTACGCTCACGTTGATTGTCCTGGTCACGCT 479
Query 544 GATTACGTTAAGAATATGATTACCGGAGCTGCACAGATGGACGGAGCTATCCTCGTTGTT 603
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATTACGTTAAGAACATGATTACCGGAGCTGCACAGATGGACGGAGCTATCCTCGTTGTT 539
Query 604 TCCGGCGCCGATGGTCCTATGCCTCAGACTAAAGAGCATATCCTTTTGGCTAAGCAGGTT 663
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 TCCGGCGCCGACGGTCCTATGCCTCAGACTAAAGAGCATATCCTTTTGGCGAAGCAGGTT 599
Query 664 GGTGTTCCTGATATGGTTGTGTTTCTTAACAAAGAGGATCAAGTAGATGATGCAGAGTTG 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGTGTTCCTGATATGGTTGTGTTTCTTAACAAAGAGGATCAAGTAGATGATGCAGAGTTG 659
Query 724 CTAGAGCTCGTTGAGCTTGAGGTTCGTGAGCTTCTCTCGTCTTATGAATTTAACGGTGAT 783
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 TTAGAGCTCGTTGAGCTTGAGGTTCGTGAGCTTCTCTCGTCGTATGAATTTAACGGTGAT 719
Query 784 GATATTCCGATTATCTCTGGTTCTGCTCTTTTAGCCGTTGAGACTCTTACTGAGAATCCT 843
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 720 GATATTCCGATTATCTCTGGTTCTGCTCTTTTAGCTGTGGAGACTCTCACTGAGAATCCT 779
Query 844 AAGGTTAAGAGAGGTGATAACAAATGGGTAGATAAGATTTATGAACTTATGGATGCTGTT 903
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AATGTGAAGAGAGGTGATAACAAATGGGTAGATAAGATTTATGAACTTATGGATGCTGTT 839
Query 904 GATGA-TTACATCCCTATCCCTCAGAGACAAACTGAATTGCCATTCTTGTTAGCTGTTGA 962
||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAT-AGTTACATCCCAATCCCTCAGAGACAAACTGAATTGCCATTCTTGTTAGCTGTTGA 898
Query 963 GGATGTGTTCTCTATCACTGGACGTGGTACGGTGGCTACAGGGCGTGTCGAGAGAGGTAC 1022
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 899 GGATGTGTTCTCTATCACGGGACGTGGTACTGTGGCTACAGGGCGTGTCGAGAGAGGTAC 958
Query 1023 GGTTAAGGTAGGAGAGACTGTAGATTTAGTGGGTTTGAGGGAGACTAGGAGTTACACTGT 1082
|||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||
Sbjct 959 GGTTAAGGTAGGAGAGACTGTAGATTTAGTTGGTTTAAGGGAAACTAGGAGCTACACAGT 1018
Query 1083 CACTGGGGTTGAAATGTTTCAGAAGATTCTTGATGAGGCTTTAGCTGGTGACAATGTAGG 1142
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1019 CACTGGGGTTGAAATGTTTCAGAAGATTCTCGATGAGGCTTTAGCTGGTGACAATGTAGG 1078
Query 1143 GTTGTTGCTTAGGGGTATTCAAAAGGCTGATATTCAGAGAGGTATGGTTTTAGCTAAGCC 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GTTGTTGCTTAGGGGTATTCAAAAGGCTGATATTCAGAGAGGTATGGTTTTAGCTAAGCC 1138
Query 1203 GGGATCGATTACTCCACATACCAAGTTTGAAGCAATTATCTATGTGTTGAAGAAAGAGGA 1262
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 1139 GGGATCGATTACTCCACATACCAAGTTTGAAGCAATTGTGTATGTGTTGAAGAAAGAAGA 1198
Query 1263 AGGTGGAAGGCATTCTCCATTCTTTGCAGGGTACAGGCCTCAGTTCTACATGAGGACGAC 1322
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1199 AGGTGGAAGGCATTCTCCATTCTTTGCAGGTTACAGGCCTCAGTTCTACATGAGGACGAC 1258
Query 1323 TGATGTTACGGGTAAAGTGACGAAGATCATGAACGACAAAGATGAAGAGTCGAAGATGGT 1382
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1259 TGATGTTACAGGTAAAGTGACAAAGATCATGAACGACAAAGACGAAGAGTCGAAGATGGT 1318
Query 1383 TATGCCCGGTGATCGAGTGAAGATTGTTGTTGAGCTTATTGTGCCGGTGGCTTGTGAACA 1442
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1319 TATGCCTGGTGATCGAGTGAAGATAGTTGTTGAGCTTATTGTGCCGGTGGCTTGTGAACA 1378
Query 1443 AGGGATGAGGTTTGCTATCAGAGAAGGAGGAAAGACTGTTGGTGCTGGAGTTATTG-GGA 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1379 AGGGATGAGGTTTGCTATCAGAGAAGGAGGAAAGACTGTTGGTGCTGGAGTTATTCAGG- 1437
Query 1502 CGATCCTCGAATGATTATAAGGTTTTAGAGAGTTTCATATAGTG 1545
| ||| |||||| | | ||||||||||||||||||||||||
Sbjct 1438 CTATCATCGAAT-A--A---GGTTTTAGAGAGTTTCATATAGTG 1475
> Ahg948643 jgi|Araly1|948643|scaffold_800530.1
Length=1479
Score = 1242 bits (672), Expect = 0.0
Identities = 1073/1266 (85%), Gaps = 30/1266 (2%)
Strand=Plus/Plus
Query 265 CGTCGCTCCTTCACCGTCCGCGCCGCTC-GTGGAAAGTTCGAGA-GGAAGAAGCCTCATG 322
|||||| |||||||||| |||||||| | | ||||| ||||| | | ||||| ||||| |
Sbjct 209 CGTCGCGCCTTCACCGTACGCGCCGC-CAGAGGAAAATTCGA-ACGCAAGAAACCTCACG 266
Query 323 TCAACATCGGAACCATCGGTCATGTTGACCATGGGAAAACTACTTTAACCGCAGC-TCTA 381
| ||||| ||||| || ||||| || |||||||| ||||| || |||||||||| | ||
Sbjct 267 TGAACATAGGAACAATAGGTCACGTCGACCATGGCAAAACAACACTAACCGCAGCGT-TA 325
Query 382 ACCATGGCTCTCGCTTCCA-TTGGTTCCAGCGTCGCTAAAAAGTACGACGAGATTGACGC 440
|| |||||| | |||| || | || ||| || || ||||| |||||||| || |||||
Sbjct 326 ACAATGGCTTTAGCTT-CAGTAGGAAACAGTGTAGCCAAAAAATACGACGAAATCGACGC 384
Query 441 TGCGCCGGAGGAGAGAGCTCGTGGTATCACAATCAACACTGCTACTGTTGAGTACGAGAC 500
|| || || || ||||||||||||||||||||||||||||| || || || ||||| ||
Sbjct 385 AGCTCCTGAAGAAAGAGCTCGTGGTATCACAATCAACACTGCAACGGTCGAATACGAAAC 444
Query 501 TGAGAATCGTCACTACGCTCACGTTGATTGTCCTGGTCACGCTGATTACGTTAAGAATAT 560
||||||||||| |||||||| ||||||||||||||||| |||||||| || ||||| ||
Sbjct 445 AGAGAATCGTCATTACGCTCATGTTGATTGTCCTGGTCATGCTGATTATGTCAAGAACAT 504
Query 561 GATTACCGGAGCTGCACAGATGGACGGAGCTATCCTCGTTGTTTCCGGCGCCGATGGTCC 620
|||||| || ||||| || ||||| || || || || ||||| || || || ||||| ||
Sbjct 505 GATTACTGGTGCTGCTCAAATGGATGGTGCGATTCTTGTTGTCTCTGGTGCTGATGGACC 564
Query 621 TATGCCTCAGACTAAAGAGCATATCCTT-TTGGCTAAGCAGGTTGGTGTTCCTGATATGG 679
||||| || |||||||| ||||| ||| ||||| ||||| |||||||||||||||||||
Sbjct 565 AATGCCACAAACTAAAGAACATAT-CTTGTTGGCGAAGCAAGTTGGTGTTCCTGATATGG 623
Query 680 TTGTGTTTCTTAACAAAGAGGATCAAGTAGATGATGCAGAG-TTGCTAGAGCTCGTTGAG 738
||||||||||||| ||||| |||||||| |||||||| ||| || ||||||| ||||||
Sbjct 624 TTGTGTTTCTTAATAAAGAAGATCAAGTTGATGATGCTGAGCTTT-TAGAGCTTGTTGAG 682
Query 739 CTTGAGGTTCGTGAGCTTCTCTCGTCTTATGAATTTAACGGTGATGATATTCCGATTATC 798
||||||||||| |||||| | ||||||||||| ||||| || |||||||||||||||||
Sbjct 683 CTTGAGGTTCGCGAGCTTTTATCGTCTTATGAGTTTAATGGCGATGATATTCCGATTATT 742
Query 799 TCTGGTTCTGCTCTT-TTAGCCGTTGAGACTCTT-ACTGAGAATCCTAAGGTTAAGAGAG 856
|| ||||||||| || ||||| || |||||| || |||||||| ||||| ||||||||||
Sbjct 743 TCCGGTTCTGCT-TTGTTAGCTGTAGAGACT-TTGACTGAGAAACCTAATGTTAAGAGAG 800
Query 857 GTGATAACAAATGGGTAGATAAGATTTATGAACTT-ATGGATGCTGTTGAT-GATTACAT 914
|||| || |||||||| |||||||||||||| || |||||| |||||||| | ||| ||
Sbjct 801 GTGAGAATAAATGGGTTGATAAGATTTATGAG-TTGATGGATTCTGTTGATAG-TTATAT 858
Query 915 CCCTAT-CC--CTCAGAGACAAACTGAATTGCCATTCTTGTTAGCTGTTGAGGATGTGTT 971
||| || || || || | || || || ||||| || ||||| || ||||||||||| ||
Sbjct 859 CCCGATTCCGACT-AG-G-CAGACGGAGTTGCCGTTTTTGTTGGCGGTTGAGGATGTTTT 915
Query 972 CTCTATCACTGGACGTGGTACGGTGGCTACAGGGCGTGTCGAGAGAGGTACG-GTTAAGG 1030
|| || ||||| ||||||||||| ||||| ||||||||||| |||||| | |||||||
Sbjct 916 TTCGATTACTGGTCGTGGTACGGTTGCTACGGGGCGTGTCGAAAGAGGTT-GTGTTAAGG 974
Query 1031 TAGGAGAGACTGTAGATTTAGTGGGTTTGAGGGAGACTAGGAGTTACACTGTCACTGGGG 1090
| || |||||||| ||||| ||||| ||||| |||||||||| ||| || || || ||||
Sbjct 975 TTGGGGAGACTGTTGATTTGGTGGGATTGAGAGAGACTAGGAATTATACGGTTACCGGGG 1034
Query 1091 TTGAAATGTTTCAGAAGATTCTTGATGAGGCTTTAGCTGGTGACAATGTAGGGTTGTTGC 1150
| |||||||||||||||||||||||||| ||| | |||||||| |||||||| |||||||
Sbjct 1035 TGGAAATGTTTCAGAAGATTCTTGATGAAGCTATGGCTGGTGATAATGTAGGATTGTTGC 1094
Query 1151 TTAGGGGTATTCAAAAGGCTGATATTCAGAGAGGTATGGTTTTAGCTAAGCCGGGATCGA 1210
|||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1095 TTAGAGGTATACAAAAGGCGGATATTCAGAGAGGTATGGTTTTGGCTAAGCCGGGTTCGA 1154
Query 1211 TTACTCCACATACCAAGTTTGAAGCAATTATCTATGTGTTGAAGAAAGAGGAAGGTGGAA 1270
||||||||||||| ||||||||||| ||| | ||||||||||||||||| ||||||||||
Sbjct 1155 TTACTCCACATACTAAGTTTGAAGCGATTGTTTATGTGTTGAAGAAAGAAGAAGGTGGAA 1214
Query 1271 GGCATTCTCCATTCTTT-GCAGGGTACAGGCCTCAGTTCTACATGAGGACGACTGATGTT 1329
| ||||| || || ||| || ||||| || |||||||| ||||||||||| || ||||||
Sbjct 1215 GACATTCGCCGTT-TTTCGCTGGGTATAGACCTCAGTTTTACATGAGGACTACGGATGTT 1273
Query 1330 ACGGGTAAAGTGACGAAGATCATGAACGACAAAGATGAAGAGTCGAAGATGGTTATGCCC 1389
|||||||||||||| ||||| ||||| || ||||| || || |||||||||||||||||
Sbjct 1274 ACGGGTAAAGTGACTAAGATTATGAATGATAAAGACGAGGAATCGAAGATGGTTATGCCT 1333
Query 1390 GGTGATCGAGTGAAGATTGTTGTTGAGCTTATTGTGCCGGTGGCTTGTGAACAAGGGATG 1449
|||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1334 GGTGATCGTGTTAAGATTGTTGTTGAGCTTATTGTGCCTGTTGCTTGTGAACAAGGGATG 1393
Query 1450 AGGTTTGCTATCAGAGAAGGAGGAAAGACTGTTGGTGCTGGAGTTATTGGGACGATCCTC 1509
||||||||||| |||||||||||||||||||||||||||||||| ||| | |||| ||
Sbjct 1394 AGGTTTGCTATTAGAGAAGGAGGAAAGACTGTTGGTGCTGGAGTGATTCAGTCGATTATC 1453
Query 1510 GAATGA 1515
||||||
Sbjct 1454 GAATGA 1459
Score = 62.1 bits (33), Expect = 1e-08
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand=Plus/Plus
Query 186 TAAACTCAAAA-CCCTAACTCTCTCTTCCTCCTTCCTCCC 224
||||| ||||| ||||||||||||||||||||||||||||
Sbjct 103 TAAAC-CAAAATCCCTAACTCTCTCTTCCTCCTTCCTCCC 141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65972304340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5