BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G20370.1 Length=799 Score E Sequences producing significant alignments: (Bits) Value Ahg890129 jgi|Araly1|890129|Al_scaffold_0007_2115 826 0.0 Ahg925616 jgi|Araly1|925616|scaffold_201177.1 499 1e-140 > Ahg890129 jgi|Araly1|890129|Al_scaffold_0007_2115 Length=528 Score = 826 bits (447), Expect = 0.0 Identities = 501/528 (95%), Gaps = 0/528 (0%) Strand=Plus/Plus Query 32 ATGTCTTTAAGTCGTAGAGATCCTCTTGTGGTCGGCAGTGTTGTTGGAGATGTTCTTGAT 91 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1 ATGTCTTTAAGTCGTAGAGATCCTCTTGTGGTGGGAAGTGTTGTTGGAGATGTTCTTGAT 60 Query 92 CCTTTCACGAGGTTGGTCTCTCTTAAGGTCACTTATGGCCATAGAGAGGTTACTAATGGC 151 ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 61 CCTTTCACGAGATTGGTCTCTCTTCGGGTCACTTATGGCCAAAGAGAGGTTACTAATGGC 120 Query 152 TTGGATCTAAGGCCTTCTCAAGTTCTGAACAAACCAATAGTGGAGATTGGAGGAGACGAC 211 |||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 121 TTGGATCTAAGGCCCTCTCAAGTTCTGAACAAACCAACAGTGGATATTGGAGGAGACGAC 180 Query 212 TTCAGAAATTTCTACACCTTGGTTATGGTGGATCCAGATGTGCCGAGTCCAAGCAACCCT 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTCAGAAATTTCTACACCTTGGTTATGGTGGATCCAGATGTGCCGAGTCCAAGCAACCCT 240 Query 272 CACCAACGAGAATATCTCCACTGGTTGGTGACTGATATACCTGCCACCACTGGAAATGCC 331 |||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||| Sbjct 241 CACCTCCGAGAATATCTCCATTGGTTGGTGACTGATATACCTGCCACAACTGGAACGGCC 300 Query 332 TTTGGCAATGAGGTGGTGTGCTACGAGAGTCCACGTCCCCCCTCGGGAATTCATCGTATT 391 ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct 301 TTTGGCAATGAAGTGGTGTGCTACGAGAGTCCACGTCCACCCTCAGGAATTCACCGTATT 360 Query 392 GTGTTGGTATTGTTCCGGCAACTCGGAAGACAAACGGTTTATGCACCGGGGTGGCGCCAA 451 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 361 GTGTTGGTATTGTTCCGGCAACTCGGAAGACAAACGGTTTATGCGCCCGGGTGGCGCCAA 420 Query 452 CAGTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTTGGTCTTCCTGTGGCTGCCTCT 511 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 421 CAGTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTTGGTCTCCCTGTGGCTGCATCT 480 Query 512 TACTTCAACTGCCAGAGGGAGAATGGCTGTGGGGGAAGAAGAACGTAG 559 | |||||| ||||||||||||||||||||||| ||||||| ||||||| Sbjct 481 TTCTTCAATTGCCAGAGGGAGAATGGCTGTGGAGGAAGAATAACGTAG 528 > Ahg925616 jgi|Araly1|925616|scaffold_201177.1 Length=568 Score = 499 bits (270), Expect = 1e-140 Identities = 458/548 (84%), Gaps = 15/548 (3%) Strand=Plus/Plus Query 23 AAGAT-AAATATGTCTTTAAGTCGT-AGAGATCCTCTTGTGGTCGGCAGTGTTGTTGGAG 80 ||||| ||| |||||| ||| | | ||||| |||||| | || |||| |||||||||| Sbjct 11 AAGATCAAAGATGTCTATAAAT-ATAAGAGACCCTCTTATAGTAAGCAGAGTTGTTGGAG 69 Query 81 ATGTTCTTGATCC-TTTCACGAGGTTGGTCTCTCTTAA-GGTCACTTATGGCCATAGAGA 138 | |||||||||| ||| | || | | |||||| ||| ||| ||||||||||| ||||| Sbjct 70 ACATTCTTGATCCGTTT-AATAGATCGATCTCTC-TAAGGGTTACTTATGGCCAAAGAGA 127 Query 139 GGTTACTAATGGCTTGGATCTAAGGCCTTCTCAAGTTCTGAACAAACCAATAGTGGAGAT 198 ||| |||||||| ||||||||||||||||||||||| | |||||| |||| ||| ||||| Sbjct 128 GGTGACTAATGGTTTGGATCTAAGGCCTTCTCAAGTCCAGAACAAGCCAAGAGTTGAGAT 187 Query 199 TGGAGGAGACGACTTCAGAAATTTCTACACCTTGGTTATGGTGGATCCAGATGTGCCGAG 258 ||| ||||| ||| |||| || |||||||| ||||||||||||||||||||||| || || Sbjct 188 TGGTGGAGAAGACCTCAGGAACTTCTACACTTTGGTTATGGTGGATCCAGATGTTCCTAG 247 Query 259 TCCAAGCAACCCTCACCAACGAGAATATCTCCACTGGTTGGTGACTGATATACCTGCCAC 318 ||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||| || Sbjct 248 TCCTAGCAACCCTCACCTCCGAGAATATCTCCATTGGTTGGTGACTGATATCCCTGCTAC 307 Query 319 CACTGGAA-ATGCCTTTGGCAATGAGGTGGTGTGCTACGAGAGTCCACGTCCCCCCT-CG 376 ||||||| | |||||||||||||| | ||||| ||||| | |||| || ||| || || Sbjct 308 AACTGGAACA-ACCTTTGGCAATGAGATTGTGTGTTACGAAAATCCAAGT-CCCACTGCG 365 Query 377 GGAATTCATCGTATTGTGTTGGTATTGTTCCGGCAACTCGGAAGACAAACGGTTTATGCA 436 |||||||||||||| ||| || ||||||| || || || || || ||||| || |||||| Sbjct 366 GGAATTCATCGTATCGTGGTGATATTGTTTCGACAGCTTGGGAGGCAAACAGTGTATGCA 425 Query 437 CCGGGGTGGCGCCA-ACAGTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTTGGTCT 495 || ||||||||||| | | ||||||||||||||||||||||||||||||||||| || || Sbjct 426 CCAGGGTGGCGCCAGA-ACTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTCGGCCT 484 Query 496 TCCTGTGGCTGCC-TCTTACTTCAACTGCCAGAGGGAGAATGGCTGTGGGGGAAGAAGAA 554 ||| ||||| || | || || |||||| |||||||||| |||||| || |||||||||| Sbjct 485 TCCCGTGGCCGCGGTTTT-CTACAACTGTCAGAGGGAGAGTGGCTGCGGAGGAAGAAGAA 543 Query 555 CGTAGATG 562 |||||| Sbjct 544 TTTAGATG 551 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29507137758 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5