BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G20830.1 Length=1975 Score E Sequences producing significant alignments: (Bits) Value Ahg492803 jgi|Araly1|492803|fgenesh2_kg.7__2236__AT4G20830.1 2887 0.0 Ahg492802 jgi|Araly1|492802|fgenesh2_kg.7__2235__AT4G20840.1 1923 0.0 Ahg470076 jgi|Araly1|470076|fgenesh2_kg.1__30__AT1G01980.1 185 9e-46 > Ahg492803 jgi|Araly1|492803|fgenesh2_kg.7__2236__AT4G20830.1 Length=1951 Score = 2887 bits (1563), Expect = 0.0 Identities = 1806/1918 (94%), Gaps = 37/1918 (2%) Strand=Plus/Plus Query 30 CAAAATGCTCACGACACCTCCACGAAcctttgtctctgtccctttcttcttcttcttcct 89 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 46 CAAAATGCTCACGACACCTCCACGAACCTTTGTCTCTGTCCCTTTCTTCTTCTTCCTCCT 105 Query 90 cctcttc-ct-t---tctct-a-c-ctctct----catct--ttctctcAATCGAACTCT 135 | ||||| || | ||||| | | |||||| ||||| ||| ||| |||| |||| Sbjct 106 CTTCTTCTCTCTACCTCTCTCATCTCTCTCTCAACCATCTCCTTC-CTC-GTCGAGCTCT 163 Query 136 GTATACAACTCTTTCCTCAAGTGTTTCTCCGACAAGACGAAATCTCCACAATCCCAAATC 195 |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 164 GTATACAACTCTTTCCTCAAATGTTTCTCCGACAAGACGAAATCTCCACAAACCCAAATC 223 Query 196 ACTGACAATGTCTTCTCTCAGA-CAAACCCTGCTTTCTCCTCCGTTCTTCGTGCTTACAT 254 |||||||||||||||||||||| | || ||| ||||||||||||| || ||||||||||| Sbjct 224 ACTGACAATGTCTTCTCTCAGAGC-AATCCTTCTTTCTCCTCCGTCCTCCGTGCTTACAT 282 Query 255 CCGCAATGCGAGGTTCAACACTTCCTCTACTCTTAAACCCACCATCATAATCACTCCTCG 314 |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 283 CCGCAATGCGAGGTTCAACACTTCATCTACTCCAAAACCCACCATCATAATCACTCCTCG 342 Query 315 CTCCGAGAGCCACGTCAGCGCCGCCGTCACTTGCTCAAAAACCCTAAATTTCCTCCTCAA 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343 CTCCGAGAGCCACGTCAGCGCCGCCGTCACTTGCTCAAAAACCCTAAATTTCCTCCTCAA 402 Query 375 AATCCGAAGCGGCGGCCATGACTACGATGGTCTCTCTTACATTTCCGACAAACCATTTTT 434 ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 403 AATCCGAAGCGGCGGTCATGATTACGATGGTCTCTCTTACATTTCCGATAAACCCTTTTT 462 Query 435 CATCCTCGACATGTCGAATATCCGTGACGTCTCTGTAGATATCGCCTCGAATTCGGCATG 494 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 463 CATCCTCGACATGTCGAATATCCGTGATGTCTCTGTAGATATCGCCTCGAATTCGGCTTG 522 Query 495 GATCTCCGCCGGAGCGACTCTCGGAGAGGTTTATTATCGGATTTGGGAGAAAAGCAGAGT 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 523 GATCTCCGCCGGAGCGACTCTCGGAGAGGTTTATTATCGGATTTGGGAGAAAAGCAAAGT 582 Query 555 CCATGGATTCCCCGCCGGAGTTTGTCCGACGGTTGGTGTTGGTGGGCATTTAAGCGGCGG 614 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 583 CCATGGATTCCCTGCCGGAGTTTGTCCGACGGTTGGTGTTGGTGGCCATTTAAGCGGCGG 642 Query 615 TGGTTACGGTAACATGGTGAGGAAGTTTGGATTATCTGTGGATTACGTTGAGGATGCCAA 674 |||||||||||||||| |||| || || ||||||||||||||||||||||||||||| || Sbjct 643 TGGTTACGGTAACATGTTGAGAAAATTCGGATTATCTGTGGATTACGTTGAGGATGCGAA 702 Query 675 GATCGTCGATGTAAACGGTCGGGTTTTAGATCGGAAAGCAATGGGTGAGGATCTTTTCTG 734 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 703 GATCGTCGATGTAAACGGTCGGGTTTTAGATCGGAAATCAATGGGTGAGGATCTTTTCTG 762 Query 735 GGCGATTACCGGTGGAGGAGGAGGTAGCTACGGCGTCGTTTTGGGATACAAAGTCAAGCT 794 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 763 GGCGATTACCGGTGGAGGAGGAGGTAGCTACGGCGTCGTTTTGGGATACAAGGTCAAGCT 822 Query 795 TGTTCCTGTGCCATCGGTCGTTACGGTGTTTAGAGTGGAGCAGTATATGGATTCAGGAGC 854 |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 823 TGTTCCTGTGCCATCGATCGTTACGGTTTTTAGAGTGGAGCAGTATATGGATTCAGGAGC 882 Query 855 TGTGGATATGGTTCACAAATGGCAATCGGTTGGTCCGAAAACTGATCC-GAATCTGTTTA 913 ||||||||||||| | |||||||||||||||||||||||||| || || ||||||||||| Sbjct 883 TGTGGATATGGTTTATAAATGGCAATCGGTTGGTCCGAAAACCGA-CCGGAATCTGTTTA 941 Query 914 TGAGAATGTTGATTCAACCAGTGACGAGGAAGAAGGTAAAGACTGTGAGAGCTTCTGTGG 973 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 942 TGAGAATGTTGATTCAACCAGTTACGAGGAAGAAGGTGAAGACTGTGAGAGCTTCTGTGG 1001 Query 974 TTGCTCTGTTTTTAGGCAGAGCAGATGA-AGTTGTTGCTTTGCTTAGTAAGGAGTTTCCT 1032 |||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| Sbjct 1002 TTGCTCTGTTTTTAGGCAGAGCAGAT-ACAGTTGTTGCTTTGCTTCGTAAGGAGTTTCCT 1060 Query 1033 GAATTGGGTTTAAAGAAGGAGAATTGTTCGGAGATGACTTGGTTTCAGTCTGCTTTATGG 1092 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1061 GAATTGGGTTTAAAGAAGGAGAATTGTACGGAGATGACTTGGTTTCAGTCTGCTTTATGG 1120 Query 1093 TGGGACAATCGTCTTAATGCTACTCAGGTTGATCCTAAAGTGTTTCTTGATCGGAATCTC 1152 ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1121 TGGGATAATCGTGTTAACGCTACTCAGGTTGATCCTAAAGTGTTTCTTGATCGGAATCTT 1180 Query 1153 GATACCTCGAGTTTCGGTAAGAGGAAATCGGATTACGTCGCGACTGCGATTCCGAAGAAA 1212 ||||| |||||||||| |||||||||||||| || ||||||||||||||||| | |||| Sbjct 1181 GATACAGCGAGTTTCGGGAAGAGGAAATCGGACTATGTCGCGACTGCGATTCCTAGGAAA 1240 Query 1213 GGGATTGAGTCTTTGTTCAAGAAGATGATTGAGTTAGGGAAAATCGGGCTTGTTTTCAAT 1272 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1241 GGTATTGAGTCTTTGTTCAAGAAGATGATCGAGTTAGGGAAAATCGGGCTTGTTTTCAAT 1300 Query 1273 CCGTATGGAGGGAAAATGGCGGAGGTTGCGGTTAACGCGAAGCCGTTTCCACATCGAAAC 1332 |||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| Sbjct 1301 CCGTATGGAGGGAAAATGGCGGAGGTTGCGGTTAACGCGACGCCATTTCCTCATCGAAAC 1360 Query 1333 AAGCTTTTCAAGATTCAGTACTCTGTGAACTGGAAAGAAAACTCTGCAGAGATAGAGAAG 1392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1361 AAGCTTTTCAAGATTCAGTACTCTGTGAACTGGAAAGAAAACTCTGCAGAGATAGAGAAG 1420 Query 1393 GGGTACTTGAATCAGGCTAAGGTGCTTTACAGTTTCATGACCGGGTTTGTGAGCAAGAAT 1452 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1421 GGGTACTTGAATCAGGCTAAGGTGCTTTACAGTTTCATGACCGGTTTTGTGAGCAAGAAC 1480 Query 1453 CCTAGGAGTTCTTACTTCAATTACCGGGATGTCGATATCGGTGTGAATGATCATGGGGCG 1512 ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 1481 CCTAGGAGTGCGTACTTCAATTACCGGGATGTGGATATCGGTGTGAATGATCATGGGGTG 1540 Query 1513 AATAGTTACAAGGAAGGAGAGGTGTATGGAAGGAAGTATTTCGGAGAGAATTTCGATCGA 1572 ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 1541 AATAGTTACAAGGAAGGAGAGGTGTATGGAAAGAAGTATTTTGGAGAGAATTTCGATCGA 1600 Query 1573 TTAGTGAAGATTAAAACCGCGGTTGATCCCGGGAATTTCTTCAGGAATGAACAGAGTATA 1632 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1601 TTAGTGAAGATTAAAACCGCGGTTGATCCCGGGAATTTCTTCAGGAATGAACAGAGTATA 1660 Query 1633 CCTACCTTGAAAAATG-AGAAGGGAATGTTGTTGCCTGAGCCGGGAAAGGCCAGACGGTG 1691 |||||||||||||||| | ||||||| |||||||||||||||||||||||| | |||||| Sbjct 1661 CCTACCTTGAAAAATGCA-AAGGGAACGTTGTTGCCTGAGCCGGGAAAGGCGAAACGGTG 1719 Query 1692 GTCACGAGTTGGAGGAGCCACCGTAGTTGCGACGGTGGTCTTACATGTCTTCTAGAATCT 1751 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1720 GTCACGAGCTGGAGGAGCCACCGTAGTTGCGACGGTGGTCTTACATGTCTTCTAGAATCT 1779 Query 1752 TAAGATTGCTTTTTGTATTGTTTTGTTTTGAATGGTTGAGTGATGATATCTCTTCATAAG 1811 | |||||| ||||| | |||||||||||||| |||||||||||||||||||||||||| Sbjct 1780 TGAGATTG-TTTTT-T---GTTTTGTTTTGAATTGTTGAGTGATGATATCTCTTCATAAG 1834 Query 1812 ATGAACAGAGTCTCACTCTTTTAGATCTTTCCAA-T---CTGAAGT--T-GCGAGAGTTT 1864 |||||||||| |||||||||| ||||||||| || | ||||||| | || || |||| Sbjct 1835 ATGAACAGAGCCTCACTCTTTCAGATCTTTCTAAGTTATCTGAAGTAGTTGCAAGTGTTT 1894 Query 1865 TTAAAGGTTCGAGATTTGCATTAGAAACAGAGCATACAATGAATTGTTAGTCAGTGGG 1922 ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 1895 TTAAAGGTT-GAGATTTGCATTAGAAACAGAGCATACAATGAAGTGTTAGTGAGTGGG 1951 > Ahg492802 jgi|Araly1|492802|fgenesh2_kg.7__2235__AT4G20840.1 Length=1620 Score = 1923 bits (1041), Expect = 0.0 Identities = 1426/1610 (89%), Gaps = 33/1610 (2%) Strand=Plus/Plus Query 50 CACGAAcctttgtctctgtccctttcttct-tcttcttcc---t-cctcttcctttctct 104 ||| ||| ||||||||||||| |||||| | || |||||| | |||| |||||||| Sbjct 11 CACAAACATTTGTCTCTGTCCTTTTCTT-TGTCCTCTTCCTTATATCTCTCCCTTTCTCC 69 Query 105 ac-ctctct-catctttctc-tcAATCGAACTCTGTATAC-AACT-CTTTCCTCAAGTGT 159 || || || || | || | || ||| ||||| | ||| || | |||| |||| ||| Sbjct 70 ACATTCGCTGCA-C-CTC-CGTC-GTCGGACTCTATCTACGAA-TCCTTTGTTCAA-TGT 123 Query 160 TTCTCCGACAAGACGAAATCTCCACAATCCCAAATCACTGACAATGTCTTCTCTCAGACA 219 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 124 TTCTCTGACAAGACGAAATCTCCACAAACCCAAATCACTGACAATGTCTTCTCTCAGACA 183 Query 220 AACCCTGCTTTCTCCTCCGTTCTTCGTGCTTACATCCGCAATGCGAGGTTCAACACTTCC 279 |||||| ||||||||||||| |||||||||||||| || |||| ||||||||||||||| Sbjct 184 AACCCTTCTTTCTCCTCCGTCCTTCGTGCTTACATTCGAAATGGGAGGTTCAACACTTCA 243 Query 280 TCTACTCTTAAACCCACCATCATAATCACTCCTCGCTCCGAGAGCCACGTCAGCGCCGCC 339 ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 244 TCTACTCCAAAACCCACTATCATCGTCACTCCTCGCTCCGAGAGCCACGTCAGCGCCGCC 303 Query 340 GTCACTTGCTCAAAAACCCTAAATTTCCTCCTCAAAATCCGAAGCGGCGGCCATGACTAC 399 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||| Sbjct 304 GTCACTTGCTCAAAAACACTAAATTTCCTCCTCAAAATCCGAAGTGGTGGCCATGATTAC 363 Query 400 GATGGTCTCTCTTACATTTCCGACAAACCATTTTTCATCCTCGACATGTCGAATATCCGT 459 || |||||||||||||| ||||| ||||| ||||| || ||||||||||||||| ||||| Sbjct 364 GAAGGTCTCTCTTACATCTCCGATAAACCCTTTTTTATACTCGACATGTCGAATCTCCGT 423 Query 460 GACGTCTCTGTAGATATCGCC--TCGAATTCGGCATGGATCTCCGCCGGAGCGACTCTCG 517 || |||||||| ||||||||| || ||| |||| ||||||||||||||||| ||||||| Sbjct 424 GATGTCTCTGTCGATATCGCCGATC-AAT-CGGCGTGGATCTCCGCCGGAGCAACTCTCG 481 Query 518 GAGAGGTTTATTATCGGA-TTTGGGAGAAAAGCAGAGTCCATGGATTCCCCGCCGGAGTT 576 | ||||||||||| | || ||||||||||||||| |||||||||||| |||||||||||| Sbjct 482 GCGAGGTTTATTA-CAGAATTTGGGAGAAAAGCAAAGTCCATGGATTTCCCGCCGGAGTT 540 Query 577 TGTCCGACGGTTGGTGTTGGTGGGCATTTAAGCGGCGGTGGTTACGGTAACATGGTGAGG 636 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |||| Sbjct 541 TGTCCGACGGTTGGTGTTGGTGGACATATAAGCGGCGGTGGTTACGGTAATATGTTGAGA 600 Query 637 AAGTTTGGATTATCTGTGGATTACGTTGAG-GATGCCAAGATCGTCGATGTAAACGGTCG 695 || || |||||||| || ||| || |||| ||||| || |||||||||||||| |||| Sbjct 601 AAATTCGGATTATCAGTTGATAAC-TTGATCGATGCGAAAATCGTCGATGTAAATGGTCA 659 Query 696 GGTTTTAGATCGGAAAGCAATGGGTGAGGATCTTTTCTGGGCGATTACCGGTGGAGGAGG 755 | ||||||| |||||||||||||||||||||||||| ||||||||| ||| || ||||| Sbjct 660 GATTTTAGACCGGAAAGCAATGGGTGAGGATCTTTTTTGGGCGATTTGCGGCGGCGGAGG 719 Query 756 AGGTAGCTACGGCGTCGTTTTGGGATACAAAGTCAAGCTTGTTCCTGTGCCATCGG-TCG 814 || ||||| |||||||||||||||||||| |||||||| |||||||||||| | | Sbjct 720 AGCTAGCTTTGGCGTCGTTTTGGGATACAAGGTCAAGCTCGTTCCTGTGCCAGAAACT-G 778 Query 815 TTACGGTGTTTAGAGTGGAGCAGTATATGGATTCAGGAGCTGTGGATATGGTTCACAAAT 874 ||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 779 TTACGGTTTTTAGAGTGGAGAAGTATATGGATTCAGGAGCGGTGGATATGGTTCACAAAT 838 Query 875 GGCAATCGGTTGGTCCGAAAACTGATCCG-AATCTGTTTATGAGAATGTTGATTCAACCA 933 ||||||| |||||||||||||| || ||| ||||||||| |||||||||||||||||| | Sbjct 839 GGCAATCCGTTGGTCCGAAAACCGA-CCGGAATCTGTTTTTGAGAATGTTGATTCAACAA 897 Query 934 GTGACGAGGAAGAAGGTAAAGACTGTGAGAGCTTCTGTGGTTGCTCTGTTTTTAGGCAGA 993 | ||| ||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||| Sbjct 898 GCGACAAGGAAGAAGGTGAAGACGGTGAGAGCTACTGTGGTGGCTCTGTTTTTAGGCAGA 957 Query 994 GCAGATGAAGTTGTTGCTTTGCTTAGTAAGGAGTTTCCTGAATTGGGTTTAAAGAAGGAG 1053 ||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 958 GCAGACGAAGTTGTTGCGTTGCTTCGTAAGGAGTTTCCTGAATTGGGTTTAAAGAAGGAG 1017 Query 1054 AATTGTTCGGAGATGACTTGGTTTCAGTCTGCTTTATGGTGGGACAATCGTCTTAATGCT 1113 |||||| |||||||| |||||||||||||||||||||||||||| |||||| |||||||| Sbjct 1018 AATTGTACGGAGATGTCTTGGTTTCAGTCTGCTTTATGGTGGGATAATCGTGTTAATGCT 1077 Query 1114 ACTCAGGTTGATCCTAAAGTGTTTCTTGATCGGAATCTCGATACCTCGAGTTTCGGTAAG 1173 |||||| ||||||||||||||||||||||||||||||| |||| ||| |||||| ||| Sbjct 1078 ACTCAGATTGATCCTAAAGTGTTTCTTGATCGGAATCTTGATAGAGCGAATTTCGGGAAG 1137 Query 1174 AGGAAATCGGATTACGTCGCGACTGCGATTCCGA-AGAAAGGGATTGAGTCTTTGTTCAA 1232 ||||||||||||||||| | || || |||||| | ||| |||||||||||||||||||| Sbjct 1138 AGGAAATCGGATTACGTTGTGAGTGAGATTCCTAGAGAT-GGGATTGAGTCTTTGTTCAA 1196 Query 1233 GAAGATGATTGAGTTAGGGAAAATCGGGCTTGTTTTCAATCCGTATGGAGGGAAAATGGC 1292 ||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1197 GAAGATGATTGAGTTGGGGAAAATCGGGCTTGTTTTTAATCCGTATGGTGGGAAAATGGC 1256 Query 1293 GGAGGTTGCGGTTAACGCGAAGCCGTTTCCACATCGAAACAAGCTTTTCAAGATTCAGTA 1352 ||||||| ||||| | |||| |||||||| || |||||||||||||||||||||||||| Sbjct 1257 GGAGGTTTCGGTTGATGCGACCCCGTTTCCGCACCGAAACAAGCTTTTCAAGATTCAGTA 1316 Query 1353 CTCTGTGAACTGGAAAGAAAACTCTG-CAGAGATAGAGAAGGGGTACTTGAATCAGGCTA 1411 ||| |||| |||| |||||||||||| | |||||||||||||| | |||||||||||||| Sbjct 1317 CTCGGTGACCTGGCAAGAAAACTCTGTC-GAGATAGAGAAGGGTTTCTTGAATCAGGCTA 1375 Query 1412 AGGTGCTTTACAGTTTCATGACCGGGTTTGTGAGCAAGAATCCTAGGAGTTCTTACTTCA 1471 | || ||||| ||||||||||||||||||||||||||||| || || | | ||||||| | Sbjct 1376 ACGTTCTTTATAGTTTCATGACCGGGTTTGTGAGCAAGAACCCCAGAAATGCTTACTTGA 1435 Query 1472 ATTACCGGGATGTCGATATCGGTGTGAATGATCATGGGGCGAATAGTTACAAGGAAGGAG 1531 ||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct 1436 ATTACCGAGATGTGGATATCGGTGTGAACGATCATGGTGCGAATAGTTATGAGGAAGGAG 1495 Query 1532 AGGTGTATGGAAGGAAGTATTTCGGAGAGAATTTCGATCGATTAGTGAAGATTAAAACCG 1591 |||||||||||||||||||||| ||||| ||||| ||||||||||| ||| ||||||||| Sbjct 1496 AGGTGTATGGAAGGAAGTATTTTGGAGATAATTTTGATCGATTAGTAAAGGTTAAAACCG 1555 Query 1592 CGGTTGATCCCGGGAATTTCTTCAGGAATGAACAGAGTATACCTACCTTG 1641 |||||||||||| |||||||||| ||||||||| ||||||||||||||| Sbjct 1556 CGGTTGATCCCGATAATTTCTTCATGAATGAACAAAGTATACCTACCTTG 1605 > Ahg470076 jgi|Araly1|470076|fgenesh2_kg.1__30__AT1G01980.1 Length=1793 Score = 185 bits (100), Expect = 9e-46 Identities = 1037/1470 (71%), Gaps = 141/1470 (10%) Strand=Plus/Plus Query 250 TACATCCGCAATGCGAGGTTCAACACTTCCTC-TACTCTTAAACC-CACCATCATAATCA 307 ||||||||||| || | |||||||||||| | | ||| ||||| | | || | ||| Sbjct 196 TACATCCGCAACGCTCGTTTCAACACTTCCACGT-CTCCCAAACCTCTGC-TCGTTATCG 253 Query 308 CTCCTCGCTCCGAGAGCCACGT-CAGCGCCGCCGTCACT-TGCTCAAAAACCCTAAATTT 365 | | || || ||| ||||||| ||| ||| ||||| || ||| | ||| | || || || Sbjct 254 CGGCGCGTTCTGAGTGCCACGTCCAG-GCCACCGTC-CTCTGCACCAAATCTCTCAACTT 311 Query 366 CCTCCTCAA-AATCCGAAGCGGCGGCCATGACTACGATGGTC-TCTCTTACATTTCCGAC 423 || ||||| | | || |||||||||||||||||||| || | | || ||||| || || Sbjct 312 CCAGCTCAAGACT-CGCAGCGGCGGCCATGACTACGACGG-CGTTTCCTACATCTCTAAC 369 Query 424 AAACCATTT-TTCATCCTCGACATGTCGAATATCCGTGACGTCTCTGTAGATA--T-CG- 478 || ||| ||| ||||||||||||| | ||||| || || | || |||| | || Sbjct 370 -TGCCCTTTCTTCGTCCTCGACATGTCCTGTCTCCGTAACATCACCGTCGATATGTCCGA 428 Query 479 CCTC-GA-ATTCGGCATGGATCT-CCGCCGGAGCGACTCTCGGAGAGGTTTATTATC-GG 534 | | || || || ||| | | ||||| || |||||||| ||||||||||| | Sbjct 429 CAACGGAGGCTCTGCCTGGGT-TGGAGCCGGCGCTACTCTCGGCGAGGTTTATTA-CAAC 486 Query 535 ATTT-G--G-G-AG-AAAA-GCA--G-AGTCCATGGATTCCCCGCCGGAGTTTGTCCGAC 584 |||| | | | || |||| || | | | || || || ||||||||||||||||| || Sbjct 487 ATTTGGCAGAGCAGCAAAACTCACGGCACT-CACGGGTTTCCCGCCGGAGTTTGTCCCAC 545 Query 585 GGTTGGTGTTGGTGGG-CA-TTTAAGCGGCGGTGGTTACGGTAACATGGTGAGGAAGT-T 641 || || | || ||| || || |||||||| || ||||| |||||| | || |||| Sbjct 546 CGTCGGAGCCGG-GGGTCACATT-AGCGGCGGAGGCTACGGCAACATGATCAGAAAGTAC 603 Query 642 TGGATTATCTGTGGATTACGTTGA-GGATGCCAAGATCGTCGATGTAAACGGTCGGGTTT 700 || || || || ||||||| | | ||| ||||||||||| || || ||||| ||| || Sbjct 604 GGGCTT-TCCGTTGATTACG-TCACGGACGCCAAGATCGTAGACGTGAACGGACGGATTC 661 Query 701 TAGATCGGAAAGCAATGGGTGAGGATCTT-TTCTGGGCGATTACCGGTGGAGGAGGAG-G 758 | ||||| ||| | ||||| |||||| || || ||||| ||| || || || || | | Sbjct 662 TCGATCGTAAATCGATGGGAGAGGAT-TTCTTTTGGGCAATTGGAGGCGGTGGTGGTGCG 720 Query 759 TAGCTACGGCGTCG-TTTTGGGATACAAAGTCAAGCTTGTTCCTGTGCCAT-CG-GTCGT 815 |||| |||||| | | || | |||| |||| || || ||||| || | || | || Sbjct 721 -AGCTTCGGCGT-GATCTTATCTTTCAAAATCAAACTCGTGCCTGTTCC-TCCGAG-GGT 776 Query 816 TACGGTGTTT-AGAGTGGAGCAGTA-TATGGATTCAGGA-GCTGTGGATATGGTTCACAA 872 || || ||| ||||||||| | | | || | | || | || ||||| || || Sbjct 777 GACTGT-TTTCAGAGTGGAG-AAAACCCTCGA-GGAAAACGCACTTGACATGGTCCATAA 833 Query 873 ATGGCAATCGGTTGGTCCGAA-AACTGATCCGAATCTGTTTATGA-G--AATGTTGATTC 928 |||||| | |||| ||| || | | | ||| |||| || |||| | ||||||| | Sbjct 834 ATGGCAGTTTGTTGCTCCCAAGACCAG-CCCGGATCTCTTCATGAGGCTAATGTTG---C 889 Query 929 AACCAGTGACGAGGAAGAAG-GTAAAGACTGTGAGAGCTTCTGTGGTTGCTCTGTTTTTA 987 | || ||||| |||| | | | ||||||| |||| || |||||||||||||| || Sbjct 890 AGCCGGTGACCCGGAACACGACT-CAGACTGTTCGAGCGTCGGTGGTTGCTCTGTTCTT- 947 Query 988 GGCAGAGCAGATGAAG-T-TGTTG-CTTTGCTTAGTAAGGAGTTTCCTGA-ATTGGGTTT 1043 || | | |||| | | | | || || |||| | || ||||| || || || ||| | Sbjct 948 GGGAAAACAGA-G-CGATCTCATGTCTCTGCTGACCAAAGAGTTCCCGGAGCTT-GGTCT 1004 Query 1044 AAAGAAGGAGAATTGTTCGGAGATGACTTGGTTTCAGTCTGCT-TTATGGTGGG---ACA 1099 ||| ||||||||| |||||||||| ||| | ||||| | | | ||||||| ||| Sbjct 1005 GAAGCCGGAGAATTGCACGGAGATGACGTGGATACAGTC-GGTGATGTGGTGGGCCAACA 1063 Query 1100 ATCGTCTTAATGCTACTCAGGTTGATCCTAAAG-TGTTTCTTGATCGGAATCTC-GATAC 1157 | || | || || || || || | || || | | || || | ||| | | ||| | Sbjct 1064 A-CGAC--AACGCCACGGAGATTAAACC-GGAGATCCTGCTGGA-CCGAAACCCGGATTC 1118 Query 1158 CTCGAGTTTCGGT-AAGAGGAAATCGGATTACGTCGCGACTGCGATTCCG-AAGAAAGGG 1215 || |||| | || || |||||||||||||| | ||| | |||| | || | | || Sbjct 1119 GGCGTCTTTC-TTGAAAAGAAAATCGGATTACGTGGAGACAGAGATT-AGCAA-AGACGG 1175 Query 1216 ATTGAG-TCTT--TGTTCAAGAAGATGATTGA-GTTAGGGAAAATCGGGCTTGTTTTCAA 1271 || || | || |||| |||||| |||| || | | ||||| | |||||||||||||| Sbjct 1176 -TTTAGAT-TTCCTGTTTAAGAAGTTGATGGAGGCT-GGGAAGCTAGGGCTTGTTTTCAA 1232 Query 1272 TCCGTATGGAGGGAAAATG-GCGGAGGTTGCGGTTAACG-CGAAGCCGTTTCCACATC-G 1328 ||||||||||||||||||| ||| || |||| || || ||| || || ||||| | | Sbjct 1233 TCCGTATGGAGGGAAAATGAGCGAAG-TTGCTACTA-CGGCGACTCCATTCCCACA-CAG 1289 Query 1329 AAACAAGCTTTTCAAGATTCAGTACTCTG-TGAACTGGAAAGAAAA---CTCTGCAGAGA 1384 || | |||||||||| | ||| | || | ||||||||||||| | ||| || | Sbjct 1290 GAAGAGGCTTTTCAAGGTCCAGCATTC-GATGAACTGGAAAGACCCGGGCACTGAAGCGG 1348 Query 1385 TAGAGAAGGGGTACTTG-AATCAGG-CTAAGGTGCTT-TACAGTTTCATGAC-CGGGTTT 1440 |||| || | | || || ||| | | | |||| ||||| | |||| | | ||| Sbjct 1349 -AGAGCAGTT-T-CATGGAA--AGGACGA-GAAGCTTCTACAGCTACATGGCTCC--TTT 1400 Query 1441 -GTGAGCAAGAATCCTAGG-AGTTCTTA-CTTCAATTACCGGGATGTCGATATCGGTG-T 1496 |||| ||||||||| || | | || || ||||||| ||||| | |||||||| | | Sbjct 1401 CGTGACCAAGAATCCAAGACACA-CGTATCT-CAATTACAGGGATCTTGATATCGG-GAT 1457 Query 1497 GAATGATC-ATGGGGCGAATAGTTACA-AGGAAGGAGAGGTGTATGGAAGGAAGTATTTC 1554 || | | |||| |||| ||||||| || ||| ||||| || || || ||||||||| Sbjct 1458 CAAC-AGCCATGGCCCGAAAAGTTACAGAG-AAGCTGAGGTTTACGGGAGAAAGTATTTC 1515 Query 1555 GGAGAGAATTTCGATCGATTAGTGAAGATT-AAAACCGCGGTTGATCCCGGGAA-TTTCT 1612 ||||||||||| ||||| || || || | | ||||| || || ||||| | || ||| | Sbjct 1516 GGAGAGAATTTTGATCGGTTGGTCAA-AGTCAAAACAGCCGTGGATCCAGAAAACTTT-T 1573 Query 1613 TCAG-GAATGAACAGAGTATACCTACCTTG 1641 |||| || |||||||||||||||||||||| Sbjct 1574 TCAGAGA-TGAACAGAGTATACCTACCTTG 1602 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74237887505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5