BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G20860.1 Length=1846 Score E Sequences producing significant alignments: (Bits) Value Ahg354696 jgi|Araly1|354696|fgenesh1_pg.C_scaffold_7001869 2470 0.0 > Ahg354696 jgi|Araly1|354696|fgenesh1_pg.C_scaffold_7001869 Length=1644 Score = 2470 bits (1337), Expect = 0.0 Identities = 1482/1554 (95%), Gaps = 2/1554 (0%) Strand=Plus/Plus Query 145 TTCTATGTGTCAAATCTGTTTATTCTACTCCGACAAGAGAACAATTCCAAAATTGCTTGT 204 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 92 TTCAATGTGTCAAATCTGTTTATTCTACTCCCACAAGAGAACAATTCCAAAATTGCTTGT 151 Query 205 CCACAAAACAATTCAATTCTACCCTCAAAAACCCTATAAATCTCACCACTCATACACTAG 264 ||||||||||||||||||| ||| || ||||||||||||||||||||||||||| || || Sbjct 152 CCACAAAACAATTCAATTCAACCTTCCAAAACCCTATAAATCTCACCACTCATAAACCAG 211 Query 265 ATTCCCGAGTTC-ACACCGACTTTTCCGAGTCTTCATCTCCAAATTCTAGTTTCCTCAAC 323 ||||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 212 ATTCCCGAG-TCTACACCGACTTTTCCGAATCTTCATCTCCAAATTCTACTTTCCTCAAC 270 Query 324 TTGAATTTCACAAGCTTGAAGCCGATTCTCATCGTTAAGCCAAAATCCGAATCCGAAATA 383 ||||||||||| || |||||||||||||| ||||| || || ||||||||||||||||| Sbjct 271 TTGAATTTCACCAGTTTGAAGCCGATTCTGATCGTAAAACCGAAATCCGAATCCGAAATC 330 Query 384 AAACAATCGATTTTATGCAGCAGGAAACTTGGAGTGCAAGTAAGAACAATGAGTGGTGGT 443 |||||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 331 AAACAATCAATTCTATGCAGCAGGAAACTTGGAGTACAAGTAAGAACCATGAGTGGTGGT 390 Query 444 CATGACTACGAAGGTCTATCTTACCTCTCACTATCACCTTTCATAATCGTCGACCTCGTT 503 ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| Sbjct 391 CATGACTACGAAGGTCTATCTTACCTCTCACAATCACCATTCATAATCGTTGACCTCGTT 450 Query 504 AACCTCAGATCAATCAGCATCAACCTCACAGACGAGACCGCTTGGATCCAATCGGGCGCA 563 ||||||||||| |||| | |||||||||||||||| | |||||||||||||||||||||| Sbjct 451 AACCTCAGATCGATCAACCTCAACCTCACAGACGACAACGCTTGGATCCAATCGGGCGCA 510 Query 564 ACACTCGGCGAAGTCTACTACAAGATCGCCAAAACCAGCAAGATCCATGCCTTTGCCGCA 623 |||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 511 ACACTCGGCGAACTCTATTACAAAATCGCCAAAACCAGCAAGATCCATGCCTTTGCCGCA 570 Query 624 GGGATATGTCCAAGTGTTGGTGTTGGTGGACATATTAGCGGAGGAGGATTCGGTACAATA 683 |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 571 GGGATATGTCCAAGTGTTGGTGTTGGCGGGCATATTAGCGGTGGAGGATTCGGTACAATA 630 Query 684 ATGAGGAAATACGGTTTAGCGTCTGATAACGTTGTGGACGCACGTTTGATGGATGTAAAT 743 ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct 631 ATGAGGAAACACGGTTTAGCGTCTGATAACGTTGTAGACGCGCGTTTGATGGACGTAAAT 690 Query 744 GGGAAAACTCTTGACCGGAAAACGATGGGAGAGGATTTGTTTTGGGCGCTTAGAGGCGGT 803 ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 691 GGGAAAATTCTTGACCGGAAAACGATGGGGGAGGATTTGTTTTGGGCGCTAAGAGGCGGT 750 Query 804 GGAGCTGCGAGTTTTGGCGTTGTCTTGTCGTGGAAGGTTAAGCTTGCTAGGGTTCCTGAA 863 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 751 GGAGCTGCAAGTTTTGGCGTTGTCTTGTCATGGAAGGTTAAGCTTGCTAGGGTTCCTGAA 810 Query 864 AAGGTAACTTGTTTCATAAGTCAACATCCGATGGGACCTAGCATGAACAAGCTTGTTCAT 923 ||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 811 AAGGTTACTTGTTTCATAAGTCAACATACGATGGGACCGAGCATGAACAAGCTTGTTCAT 870 Query 924 AGATGGCAATCCATAGGATCAGAGCTAGACGAAGATTTATTCATCAGAGTCATTATTGAC 983 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 871 AGATGGCAATCCATAGGATCAGAGCTAGACGAAGATTTATTCATCAGAGTTATTATTGAT 930 Query 984 AACAGTCTAGAAGGGAATCAAAGAAAAGTGAAATCAACATTTCAAACTCTATTTCTTGGT 1043 ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| Sbjct 931 AACAGTCTAGAAGGGAATCAAAGAAGAGTGAAATCTACATTTCAAACTCTTTTTCTTGGT 990 Query 1044 GGAATCGATAGACTGATTCCTCTGATGAACCAGAAGTTTCCGGAACTCGGCTTACGATCT 1103 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 991 GGAATCGATAGATTGATTCCTCTGATGAACCAGAAGTTTCCGGAACTCGGTTTACGATCT 1050 Query 1104 CAAGACTGTTCGGAAATGAGCTGGATCGAATCGATAATGTTCTTCAACTGGAGATCAGGA 1163 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1051 CAAGACTGCTCGGAAATGAGCTGGATCGAATCGATAATGTTCTTCAACTGGAGATCAGGA 1110 Query 1164 CAGCCGTTAGAGATTTTGCTCAACAGAGACCTAAGATTCGAGGATCAGTATTTCAAAGCA 1223 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1111 CAGCCGTTAGAGATTTTGCTCAACAGAGACCTAAGATTCGAAGATCAGTATTTCAAAGCA 1170 Query 1224 AAGTCAGATTATGTTCAAAAACCCGTTCCTGAAAACGTTTTCGAAGAAGTAACCAAGAGA 1283 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1171 AAATCAGATTATGTTCAAAAACCCGTTCCTGAAAACGTTTTCGAAGAAGTAACCAAGAGA 1230 Query 1284 TTTCTCGAGCAAGATACTCCACTGATGATCTTTGAGCCATTGGGTGGGAAAATCAGCAAG 1343 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1231 TTTCTCGAGCAAGATACTCCATTGATGATCTTCGAGCCATTGGGTGGGAAAATCAGCAAG 1290 Query 1344 ATTTCAGAAACAGAATCTCCATATCCACACAGAAGAGGTAATCTGTATAATATACAGTAC 1403 |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1291 ATTTCAGAAACAGAGTCTCCATATCCACACAGGAGAGGGAATCTGTATAATATACAGTAC 1350 Query 1404 ATGGTGAAATGGAAAGTGAATGAAGTCGAGGAGATGAACAAACATGTCAGGTGGATGAGA 1463 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1351 ATGGTGAAATGGAAAGTGAATGAAGTCGAGGAGATGAACAAACATGTTAGGTGGATGAGA 1410 Query 1464 TCGTTACACGATTACATGACTCCGTATGTTTCTAAATCGCCGAGAGGAGCTTATTTGAAT 1523 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1411 TCGCTACACGATTACATGACTCCGTATGTTTCTAAATCGCCGAGAGGAGCTTATTTGAAT 1470 Query 1524 TACAGAGATCTTGATTTGGGCTCGACCAAAGGGATTAACACGAGTTTCGAAGATGCAAGG 1583 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 1471 TACAGAGATCTTGATTTGGGCTCGACCAAAGGGATCAACACAAGTTTCGAAGATGCGAGG 1530 Query 1584 AAATGGGGTGAGACTTATTTCAAAGGTAATTTCAAGAGATTAGGTTTGGTTAAAGGGAAG 1643 |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1531 AAATGGGGTGAGACATATTTCAAAGGTAACTTCAAGAGATTGGGTTTGGTTAAAGGGAAG 1590 Query 1644 ATTGATCCAACAAATTTCTTCAGGAACGAACAGAGTATTCCTCCTCTGTTTTGA 1697 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1591 ATTGATCCCACAAATTTCTTCAGGAACGAACAGAGTATTCCTCCTCTGTTTTGA 1644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69324245900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5