BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20970.1
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329503 jgi|Araly1|329503|fgenesh1_pm.C_scaffold_7001730 891 0.0
> Ahg329503 jgi|Araly1|329503|fgenesh1_pm.C_scaffold_7001730
Length=576
Score = 891 bits (482), Expect = 0.0
Identities = 540/569 (95%), Gaps = 0/569 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCCGAGCCATTCAAACACAGGTCAATCAAGATCTGTAGATCGCAAAACGGTTGAG 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGAGCCGAGCCATTCAAACACTGGTCAATCAAGATCTGTAGATCGCAAAACGATTGAG 60
Query 61 AAAAATAGAAGGATGCAAATGAAGTCTCTCTACTCAGAACTCATCTCTCTTCTTCCTCAT 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAATAGAAGGATGCAAATGAAATCTCTCTACTCAGAACTCATCTCTCTTCTTCCTCAT 120
Query 121 CATTCTTCTACGGAGCCTTTAACACTACCTGATCAGCTAGATGAAGCTGCAAACTACATC 180
|| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CAGTCTTCTAGGGAGCCTTTAACACTACCTGATGAGCTAGATGAAGCTGCAAACTACATC 180
Query 181 AAGAAGCTACAAGTGAACGTGGAGAAAAAGAGAGAAAGGAAAAGGAACCTCGTTGCGACT 240
||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 181 AAGAAGCTACAAGTGAACGTGGAGAAAAAGAGAGAAAGGAAGAGGAAACTTGTTGCGACT 240
Query 241 ACAACTTTGGAGAAACTGAATTCCGTCGGATCTTCATCGGTTTCGTCGAGCGTCGATGTC 300
|||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 241 ACAACTTTTGAGAAATTGAATTCCGTCGGATCTTCATCGGTTTCTTCGAGTGTCGATGTC 300
Query 301 TCCGTGCCAAGAAAGCTGCCAAAAATCGAGATTCAAGAAACTGGTTCCATTTTTCACATC 360
|||||||| |||| ||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 301 TCCGTGCCTAGAAGGCTCCCAAAAATTGAGATTCAAGAGACTGGTTCCATTTTTCACATC 360
Query 361 TTTCTTGTGACAAGCTTGGAACACAAGTTTATGTTTTGTGAGATCATTCGTGTTCTCACC 420
||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct 361 TTTCTTGTGACAAGCTTGGAACACAAGTTTATGTTCTGTGAGATCGTTCGTCTTCTCACT 420
Query 421 GAGGAATTAGGAGCTGAGATCACTCATGCTGGATACTCCATTGTTGATGATGCTGTCTTC 480
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 GAAGAATTAGGAGCTGAGATCACTCATGCTGGATACTCCATTGTTAATGATGCTGTCTTC 480
Query 481 CACACCCTTCACTGCAAGGTGGAAGAACACGATTATGGAGCTAGGAGTCAAATTCCTGAA 540
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 481 CACACCCTTCACTGCAAGGTGGAAGAATGTGATTATGGAGCTAGGAGCCAAATTCCTGAA 540
Query 541 AGACTGGAGAAGATTGTGAACAGTGTTCA 569
|||||||||||| ||||||||||||||||
Sbjct 541 AGACTGGAGAAGTTTGTGAACAGTGTTCA 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20947418361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5