BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21110.1
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492776 jgi|Araly1|492776|fgenesh2_kg.7__2209__AT4G21110.1 1014 0.0
> Ahg492776 jgi|Araly1|492776|fgenesh2_kg.7__2209__AT4G21110.1
Length=626
Score = 1014 bits (549), Expect = 0.0
Identities = 604/630 (96%), Gaps = 6/630 (1%)
Strand=Plus/Plus
Query 1 ATACCGATTTCCGAACACAACCCT-AA-AGAGGCTTCTTCGACGACGTTGGTTCTTCTTC 58
|||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||
Sbjct 1 ATACCGATTTCCGAACACAACCCTAAAGAGAGGCTTC-T--ACGACGTTGGTTCTTCTTC 57
Query 59 CTTTGTCCTGCGCCGCGATCTCTCCTTCTCCAACTTCCCTCGTCCTGTCCAAAGAAAATG 118
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 C-TTGTCCTGCGCCGCGATCTCTCCTTCTCCAACTTCCCTCGTCCTGTCCAAAGAAAATG 116
Query 119 CCAAAGGTTAAAACTAACCGAGTCAAGTACCCAGAAGGATGGGAGTTGATCGAGCCTACT 178
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 117 CCAAAGGTTAAAACTAACCGAGTCAAGTACCCAGAAGGATGGGAGTTGATTGAGCCTACT 176
Query 179 CTTCGAGAGCTTGATGCCAAGATGAGAGAAGCTGAGACTGATTCACATGATGGTAAGAGA 238
||||||||||| || ||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 177 CTTCGAGAGCTAGACGCCAAGATGAGAGAAGCTGAGACAGATTCACATGATGGCAAAAGA 236
Query 239 AAGTGTGAAACTTTATGGCCAATCTTCAAAGTTTCTCATCAGAGGAGTCGGTATGTATAT 298
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 237 AAGTGTGAAACTTTATGGCCAATCTTCAAAGTTTCTCATCAGAGGAGTCGTTATGTATAT 296
Query 299 GACCTTTATTACCGAAGGGAAGAAATATCTAAAGAGCTCTATGAATTCTGCTTGGACCAG 358
|| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 297 GATCTTTATTACCGACGGGAAGAAATATCTAAAGAGCTCTATGAGTTCTGCTTGGACCAG 356
Query 359 GGCTATGCAGATCGCAGTCTGATTGCCAAATGGAAAAAGTCGGGATACGAACGTTTATGC 418
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 357 GGCTATGCAGATCGCAGTCTGATTGCCAAATGGAAAAAGTCGGGATATGAACGTTTATGC 416
Query 419 TGCTTGCGCTGCATACAGCCAAGAGACCACAACTATGGAACAACATGTGTATGCCGTGTT 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 417 TGCTTGCGCTGCATACAGCCTAGAGACCACAACTATGGAACAACATGTGTATGTCGTGTT 476
Query 479 CCCAAACACTTGCGTGAAGAGAAAGTGGTCGAATGCGTTCACTGCGGCTGTCAAGGATGC 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 CCCAAACACTTGCGTGAAGAGAAAGTGGTCGAATGCGTTCACTGCGGGTGTCAAGGATGC 536
Query 539 GCGAGTGGCGATTAAATTCAACATAGCTTTATTCGCTATCTCTGACTGTTTGTTACAATC 598
|| |||||||||||||||| ||| |||||||||||| ||| |||||||||||| ||||||
Sbjct 537 GCTAGTGGCGATTAAATTCCACACAGCTTTATTCGCAATCCCTGACTGTTTGTCACAATC 596
Query 599 TTGTCACTTGTTAAATCTGGATTATGTATT 628
||||||||||||||||||||||||||||||
Sbjct 597 TTGTCACTTGTTAAATCTGGATTATGTATT 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27181639821
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5