BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21190.1 Length=1308 Score E Sequences producing significant alignments: (Bits) Value Ahg329483 jgi|Araly1|329483|fgenesh1_pm.C_scaffold_7001710 1391 0.0 Ahg492766 jgi|Araly1|492766|fgenesh2_kg.7__2199__AT4G21180.1 285 6e-76 > Ahg329483 jgi|Araly1|329483|fgenesh1_pm.C_scaffold_7001710 Length=954 Score = 1391 bits (753), Expect = 0.0 Identities = 893/955 (94%), Gaps = 32/955 (3%) Strand=Plus/Plus Query 84 ATGCTAAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACT 143 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCTTAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACT 60 Query 144 AAGCTCTTCACCAAAAAGCCTAACAATGTTGTGGTTTGTGCGGCGAGAGGTCCAAGACCT 203 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGCTCTTCTCCAAAAGGCCTAACAATGTTGTGGTTTGTGCGGCGAGAGGTCCAAGACCT 120 Query 204 CGGTCTCCTCGTGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCTAAAGCTGCCAAA 263 ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 121 CGGTCTCCTCGAGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCCAAGGCTGCCAAA 180 Query 264 ATGATTGCTTGTATAAAAGGATTGTCGAATGTTAAAGAAGAAGTTTATGGAGCGCTTGAT 323 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 181 ATGATTGCTTGTATAAAAGGATTGTCGAATGTTAAAGAAGAAGTTTACGGAGCGCTTGAT 240 Query 324 TCCTTCATTGCTTGGGAATTAGAGTTCCCTCTTGTTATAGTTAAGAAGGCATTAGTTATA 383 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCCTTCATTGCTTGGGAGTTAGAGTTCCCTCTTGTTATAGTTAAGAAGGCATTAGTTATA 300 Query 384 CTTGAAGATGAAAAAGAATGGAAGAAGATTATTCAGGTGACAAAATGGATGCTGAGTAAA 443 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTTGAAGATGAAAAAGAGTGGAAGAAGATTATTCAGGTGACAAAATGGATGCTGAGTAAA 360 Query 444 GGCCAAGGAAGAACAATGGGAACTTACTTCTCATTACTAAATGCTTTAGCAGAAGATAAT 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GGCCAAGGAAGAACAATGGGAACTTACTTCTCATTACTAAATGCTTTAGCAGAAGATAAT 420 Query 504 CGCCTTGACGAAGCTGAGGAATTGTGGAACAAATTGTTCATGGAACATTTAGAAGGAACT 563 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 421 CGGCTTGACGAAGCTGAGGAATTGTGGAACAAGTTGTTCATGGAACATTTAGAAGGAACT 480 Query 564 CCTAGAAAGTTCTTCAACAAAATGATCTCTATATATTACAAGAGAGATATGCACCAAAAG 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CCTAGAAAGTTCTTCAACAAAATGATCTCTATATATTACAAGAGAGATATGCACCAAAAG 540 Query 624 CTCTTCGAGGTCTTTGCTGACATGGAGGAGCTTGGAGTGAAACCGAATGTTGCGATTGTG 683 ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 541 CTCTTTGAGGTATTTGCTGACATGGAGGAGCTTGGAGTGAAACCGAACGTTGCGATTGTG 600 Query 684 TCTATGGTTGGAAAAGTGTTTGTGAAACTAGAGATGAAGGATAAGTACGAGAAACTGATG 743 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 601 TCTATGGTTGGAAAAGTGTTTGTGAAATTAGAGATGAAGGATAAGTACGAGAAACTGATG 660 Query 744 AAGAAATATCCTCCACCACAGTGGGAGTTTAGATACATCAAAGGAAGACGTGTTAAGGTC 803 ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| Sbjct 661 AAGAAATATCCTCCACCTCAGTGGGAGTTCAGATACATCAAAGGAAGACGCGTTAAGGTC 720 Query 804 AAGGCAAAGCAGCTGAATGAGCTAAGCGAAGGTGAAGGTGGTTTAAGCAGCGACGAAGAT 863 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 721 AAGGCAAAGCAGCTAAATGAGCTAAGCGAAGGTGAAGGTGGTTTAAGCAGCGATGAAGAT 780 Query 864 AAGATTGACAAtgagattgagagtgaag--aagaa-gatg---g-tgaggatct----ca 912 |||||||| | ||||||||||||| || || || | || | | |||| | || Sbjct 781 AAGATTGATACTGAGATTGAGAGTAAATCTAA-AATGTTGTCAGATAAGGAACCAGAGCA 839 Query 913 -g-tga--ag-a-----g-gaaga--a-ga---tgaaaaagaaCTTTTGGGTGGAAGTCA 955 | || || | | ||||| | || ||||||||||||||||||||||| ||| Sbjct 840 AGATGGTGAGGATCTCAGTGAAGAGGAAGAAGATGAAAAAGAACTTTTGGGTGGAAATCA 899 Query 956 AGGACAGATT--A-CTTCTAGAGAACCCAGTCTTGATCATTTGGACTCTTCATGA 1007 |||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 900 AGGACAGATTGGAACTTCTAGAGAACCCAGTCTTGATCATTTGGACTCTTCATGA 954 > Ahg492766 jgi|Araly1|492766|fgenesh2_kg.7__2199__AT4G21180.1 Length=2322 Score = 285 bits (154), Expect = 6e-76 Identities = 169/176 (96%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 1111 AAAACATGACCAGAAAAGTTTTGAACTATCTGAGCTTAAGAGTCAAAACAAGGTATAGAT 1170 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 2322 AAAACATGACCAGAAAAGTTTTGAACTATTTGAGCTTAAGAGTCAAAACAAGATATAGAT 2263 Query 1171 TTGAAGAGTCAACTAAAAAGAGTATTAAACTCAGCAAAAAGATTAAATACTGTAAAATCT 1230 || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2262 TTAAAGAGTCAACTAAAAAGAGTATTAAACTCAGCAAAA-GATTAAATACTGTAAAATCT 2204 Query 1231 TTTAGTACGACTGTGTAAGCTCTGAAAACAAAAATTATTGTATAATTTCAGA-CAA 1285 || |||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 2203 TTGAGTACGACTGTGTAAGCTTTGAAAACAAAAATTATTGTATAATTTCAGATCAA 2148 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48911702511 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5