BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21210.1
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492762 jgi|Araly1|492762|fgenesh2_kg.7__2195__AT4G21210.1 2200 0.0
> Ahg492762 jgi|Araly1|492762|fgenesh2_kg.7__2195__AT4G21210.1
Length=1391
Score = 2200 bits (1191), Expect = 0.0
Identities = 1330/1397 (95%), Gaps = 9/1397 (1%)
Strand=Plus/Plus
Query 31 aaaaaaaaaaaaaaaaaGAATAAAGAAATGGCTTTGCTCTCGGCGATGAAGTTGCAGGGA 90
||||||| ||||| |||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 1 AAAAAAACAAAAAGAAAGAA-AAAGAAATGGCTTTTCTTTCGGCGATGAAGTTGCAGGGA 59
Query 91 CGTCCACCACCGATCTCGTCCAATCTCAACCCAAATTCCAAACCTGCAGGTTCGGATTCC 150
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGTCCACCATCGATCTCATCCAATCTCAACCCAAATTCCAAACCTGCAGGTTCGGATTCC 119
Query 151 GTTTCCTTAAACGCCTCCGAACCTGGCTCCGAACGGAAGCCTCGGAAATTCAGCTCACAG 210
|||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 GTTTCCTTAAACACCTCTGAACCTGGCTCCGAACGGAAGCCTCGAAAATTCAGCTCACAG 179
Query 211 CTAAACCGCTGGAACAGAGCACGAACCTTAAGGTCTGGCGCGAAGCTGGACAGTACGATT 270
||||||||||||||||||||| ||||||||| || ||||||||||| ||| ||||||||
Sbjct 180 CTAAACCGCTGGAACAGAGCAAGAACCTTAAAATCCGGCGCGAAGCTAGACCGTACGATT 239
Query 271 ACTAATGGATCAAACAATACGACCGGTCCGATGCGTCCGATCGAAAGTTCGAGTCGCACT 330
||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||| ||
Sbjct 240 GCTAATGGATCAAACAGTACGAACGGTCCGATGCGTCCAATCGAAAGTTCGAATCGCTCT 299
Query 331 GATGTTTCGACA-TTGGACAGCGACGTGTCATCATCAAGTAACGGAGTTAGCGAGGCGGA 389
|||||||||||| || ||||| ||||||||||||||||||||||||| || |||| ||||
Sbjct 300 GATGTTTCGACACTT-GACAGTGACGTGTCATCATCAAGTAACGGAGATAACGAGACGGA 358
Query 390 TATGACGGCGGCGAAGTCGATTTACATAGTCTCTGACGGAACTGGATGGACGGCGGAACA 449
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 359 TATGACGGCGGCTAAGTCGATTTACATAGTCTCTGACGGAACTGGTTGGACGGCGGAACA 418
Query 450 CGCCGTTAACGCTGCTTTGGGACAATTCGACTATTGCTTGGTCGACCGTGGTTGTCCCGT 509
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 419 CGCCGTTAACGCTGCCTTGGGCCAATTCGATTATTGCTTGGTCGACCGTGGTTGTCCCGT 478
Query 510 TAATACACATCTCTTCTCAGGGATTGAAGATGG-GGAGAAGTTAATGGAGATCATAAAGC 568
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 479 TAATACACATCTCTTCTCAGGGATTGAAGATGGAGG-GAAGTTAATGGAGATCATAAAGC 537
Query 569 AAGCGGCAAGAGAAGGAGCAATGGTAATCTACACTTTAGCTGATCCATCAATGGCAGAAG 628
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAGCAGCAAAAGAAGGAGCAATGGTAATCTACACTTTAGCTGATCCATCAATGGCAGAAG 597
Query 629 CAACCATGAGAGCTTGCAAGCTATGGAAAATCCCATCATTAGACATTCTTGGACCAATCA 688
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 598 CAACCATGAGAGCTTGCAAGCTATGGAAAATCCCATCACTAGACATTCTTGGACCAATCA 657
Query 689 CAGAGTCAATCTCCTCTCACTTAGGCACTAATCCTTCCGGTCTTTCACGTGGCATAACAA 748
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAGACTCAATCTCTTCTCACTTAGGCACTAATCCTTCCGGTCTTTCACGTGGCATAACAA 717
Query 749 ACTCATCTCTCAACGAAGACTACTTCAAAAGAATCGAAGCTATCGAATTCACTATCAAAC 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACTCATCTCTCAACGAAGACTACTTCAAAAGAATCGAAGCTATCGAATTCACTATCAAAC 777
Query 809 ACGACGACGGTGCCTTGCCCGAGAATCTTGAAAAAGCTGACATTGTTCTTGTAGGTGTCT 868
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 778 ACGACGACGGTGCCTTGCCGGAGAATCTTGAAAAAGCTGACATTGTTCTTGTAGGTGTTT 837
Query 869 CTAGGACAGGGAAGACACCACTCTCGACTTACTTAGCTCAAAAGGGCTACAAAGTCTCTA 928
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 838 CTAGAACAGGGAAGACACCACTCTCTACTTACTTAGCTCAAAAGGGTTACAAAGTATCTA 897
Query 929 ACGTACCGATTGTGAACGGTGTTGATCTTCCCAAGACTTTGTTTGAGATCGACCCGAGAA 988
|||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 898 ACGTACCGATCGTGAACGGTGTAGATCTTCCCAAGACTCTGTTTGAGATCGACCCGAGAA 957
Query 989 AGGTTTTTGGTTTGATGATTAATCCATTGGTGTTGCAAGGGATAAGAGAGGCTAGAGCCA 1048
||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 958 AGGTTTTTGGTCTGATGATTAATCCGGTGGTGTTGCAAGGGATAAGAGAGGCAAGAGCCA 1017
Query 1049 AGAGTCTTGGACTTGGTTCGAGTTTTAAGACTAAGTACTCTGAGTTAGGTTCTGTTAAAG 1108
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1018 AGAGTCTTGGACTTGGTTCGAGTTTTAAGACTAAGTACTCTGAGTTGGGTTCTGTTAAAG 1077
Query 1109 AAGAGCTTGAGCTTGCCAAGAAAATCTTTGCAGAGAATCCGACTTGGCCAGTGATTGAAG 1168
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1078 AAGAGCTTGAGCTTGCCAAGAGAATCTTTGCTGAGAATCCGACTTGGCCAGTGATTGAAG 1137
Query 1169 TGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTAAGGCTTTACGATGAGAGAC 1228
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1138 TGACAGAGAGTGCAATTGAGGAAACTGCGGCAGTGGTTTTGAGGCTTTACGATGAGAGAC 1197
Query 1229 AAAGCAATAGAGCAATGCCTCGCATCTCTAAAAGCTACTAAATGATTATTATTCAAAGAG 1288
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AAAGCAATCGAGCAATGCCTCGCATCTCTAAAAGCTACTAAATGATTATTATTCAAAGAT 1257
Query 1289 GATTTGAAATTAAGGTGTAAGGATATATATAGAGAAAATATGAATTGATAAAACTCTTTT 1348
||||| ||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 1258 GATTT-AAATTAAGGTGGAAG-A-ATATATAGAGAAAATATAAATTGATAAAACTCTTTT 1314
Query 1349 GTAAA-GCCCATTGGCACATTTTTACATGACCATATTATTGGGTCAAAGCTAAAATCCAT 1407
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1315 GTAAAAGCCCATTGGCACATTTTTACATGACCTTATTATTGGGTCAAAGCTAAAATCCAT 1374
Query 1408 ACAAATATTTCACTATT 1424
|||||||||||| ||||
Sbjct 1375 ACAAATATTTCATTATT 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53250162510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5