BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21280.2 Length=905 Score E Sequences producing significant alignments: (Bits) Value Ahg492755 jgi|Araly1|492755|fgenesh2_kg.7__2188__AT4G21280.2 1389 0.0 Ahg490167 jgi|Araly1|490167|fgenesh2_kg.6__3301__AT4G05180.1 459 2e-128 > Ahg492755 jgi|Araly1|492755|fgenesh2_kg.7__2188__AT4G21280.2 Length=890 Score = 1389 bits (752), Expect = 0.0 Identities = 848/893 (95%), Gaps = 11/893 (1%) Strand=Plus/Plus Query 12 GCTTCAATTTTCGTCTTGAGAAAG--AA-AAACAA-AATGGCTTCGATGGGTGGATTACA 67 |||||||||||||||||||||||| || ||| || |||||||||||||||||||||||| Sbjct 1 GCTTCAATTTTCGTCTTGAGAAAGAAAACAAAAAACAATGGCTTCGATGGGTGGATTACA 60 Query 68 CGGTGCATCTCCGGCGGTTCTTGAAGGAAGCTTAAAGATCAATGGCTCCAGCCGTCTGAA 127 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 61 CGGTGCATCTCCGGCGGTTCTTGAAGGAAGCTTAAAGATCAATGGCTCGAGCCGTCTGAA 120 Query 128 TGGCTCTGGAAGAGTGGCGGTGGCTCAAAGGTCTAGACTTGTCGTCAGAGCTCAGCAGAG 187 || | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 121 TGTCCCTGGAAGAGTGGCGGTGGCTCAAAGGTCTAGACTTGTGGTCAGAGCTCAGCAGGG 180 Query 188 TGAGGAGACTTCTCGCCGGTCCGTGATTGGGCTTGTTGCTGCTGGTTTAGCTGGTGGCTC 247 ||| ||||||||||| ||||| ||||||||||| || |||||||| ||||| |||||||| Sbjct 181 TGAAGAGACTTCTCGTCGGTCTGTGATTGGGCTCGTGGCTGCTGGATTAGCCGGTGGCTC 240 Query 248 GTTTGTTCAGGCTGTCCTCGCCGATGCTATTTCGATCAAAGTTGGCCCTCCTCCAGCTCC 307 |||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |||| Sbjct 241 GTTTGTTCAGGCTGTCCTCGCCGATGCTGTTCCGATCAAAGTTGGTCCTCCTCCACCTCC 300 Query 308 TTCCGGTGGCCTTCCAGCTGGGACAGATAACTCAGACCAAGCAAGAGACTTTGCATTGGC 367 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 301 TTCCGGTGGCCTTCCAGCTGGGACAGAGAACTCAGACCAAGCAAGAGACTTTGAATTGGC 360 Query 368 ATTGAAAGACAGGTTTTACTTACAGCCATTGCCACCAACAGAAGCTGCAGCTAGAGCCAA 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ATTGAAAGACAGGTTTTACTTACAGCCATTGCCACCAACAGAAGCTGCAGCTAGAGCCAA 420 Query 428 AGAATCTGCAAAGGATATCATAAATGTGAAGCCATTGATCGACAGGAAAGCTTGGCCATA 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AGAATCTGCAAAGGATATCATAAATGTGAAGCCATTGATCGACAGGAAAGCTTGGCCATA 480 Query 488 TGTTCAAAACGATCTTCGTTCCAAGGCTTCTTATCTTCGTTATGATCTTAACACAATCAT 547 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 481 TGTTCAAAACGATCTCCGTTCCAAGGCTTCTTATCTTCGTTATGACCTTAACACAATCAT 540 Query 548 TTCCTCCAAACCCAAGGATGAGAAGAAGTCACTCAAGGATCTCACCACCAAGCTCTTCGA 607 |||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||| Sbjct 541 TTCCTCCAAACCCAAGGACGAGAAGAAGTCCCTAAAGGAGCTCACCACCAAGCTCTTCGA 600 Query 608 TACCATCGACAATCTGGATTATGCGGCGAAGAAGAAGAGTCCTTCGCAGGCTGAGAAGTA 667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TACCATCGACAATCTGGATTATGCGGCGAAGAAGAAGAGTCCTTCGCAGGCTGAGAAGTA 660 Query 668 CTATGCTGAGACAGTCTCTGCTTTGAACGAAGTTCTTGCCAAGCTTGGTTAAGCATTTTA 727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CTATGCTGAGACAGTCTCTGCTTTGAACGAAGTTCTTGCCAAGCTTGGTTAAGCATTTTA 720 Query 728 ATTTCTGCATTTTTCTTGTAAATTATTAT-TCTTGGTTTTTGTTCT-TGAGTACTTTAGA 785 ||| |||| |||||||||||||||||||| ||||| |||||||| | ||||||||||||| Sbjct 721 ATT-CTGC-TTTTTCTTGTAAATTATTATCTCTTGATTTTTGTTTTCTGAGTACTTTAGA 778 Query 786 CTCAAATTCGTGAATCTGAATTTATGTTTCACGTTTTCACCAAGTAA-TGGCAATTTCTT 844 ||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| Sbjct 779 CTCAAATTCGTGAATCTGAATTTATTTTTCACGTTTTCACCAAAAAAATGGCAATTTCTT 838 Query 845 GAGTATGCGTTAGCTTTGT-TTGCATGGTGATTTAGCAAACAACAACATAAAG 896 |||||||| ||| |||| | ||||||||||||||||||||||||| ||| ||| Sbjct 839 GAGTATGCATTAACTTT-TCTTGCATGGTGATTTAGCAAACAACATCATTAAG 890 > Ahg490167 jgi|Araly1|490167|fgenesh2_kg.6__3301__AT4G05180.1 Length=893 Score = 459 bits (248), Expect = 2e-128 Identities = 553/695 (80%), Gaps = 42/695 (6%) Strand=Plus/Plus Query 49 CTTCGATGGGTGGATTACACGGTGCATCTCCGGCGGTTCTTGAAGGAAGCT-TAAAGATC 107 ||||||||| ||| |||| || ||||||| ||| || ||||||||||| | || ||||| Sbjct 90 CTTCGATGGCTGGCTTACGTGGCGCATCTCAGGCTGTCCTTGAAGGAAG-TCTACAGATC 148 Query 108 AATGGCTCCAGCCGTCTGAATGGC-TCTGGAAGAGTGGCGG-TGG--CTCAAAGGTCTAG 163 |||||||| | |||| |||| | ||| |||||| ||| ||| ||||||| | | Sbjct 149 AATGGCTCAAACCGTTTGAA---CATCT-CAAGAGTCACGGTTGGATCTCAAAGAACCGG 204 Query 164 ACTTGTCG-TCAGAGCTCAGC---A-GAGT--G-A--GGAGACTTCTCGCCGGTCCGTGA 213 |||||| | |||| ||||||| | |||| | | || | | |||| |||| |||| Sbjct 205 ACTTGT-GATCAGGGCTCAGCAGAACGAGTCAGTACCAGAAAGTAGTCGCAGGTCAGTGA 263 Query 214 TTGGGCTTGTTGCTGCTGGTTTAGCTGGTGGCTCGTTTGTTCAGGCTGTCCTCGCCGATG 273 | ||||| || || ||||||||||| ||||| || || ||| | ||||| ||||||| | Sbjct 264 TCGGGCTCGTGGCGGCTGGTTTAGCCGGTGGTTCATTCGTTAAAGCTGTTTTCGCCGAAG 323 Query 274 CTATTTCGATCAAAGTTGGCCCTCCTCCAGCTCCTTCCGGTGGCCTTCCAGCTGGGACAG 333 ||||| ||||||||||||| ||||||||| ||||||||||||||| | | |||| |||| Sbjct 324 CTATTCCGATCAAAGTTGGTCCTCCTCCACCTCCTTCCGGTGGCC-T--ACCTGGAACAG 380 Query 334 ATAACTCAGACCAAGCAAGAGACTTTGCATTGGCATTGAAAGACAGGTTTTACTTACAGC 393 |||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||| | Sbjct 381 ATAACTCAGACCAAGCAAGAGATTTTTCATTGGCATTGAAAGACAGATTTTACATACAAC 440 Query 394 CATTGCCACCAACAGAAGCTGCAGCTAGAGCCAAAGAATCTGC-AAAGGATATCATAAAT 452 ||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||| || Sbjct 441 CATTGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGAATCTGCTAAAG-AGATCATTAAC 499 Query 453 GTGAAGCCATTGATCGACAGGAAAGCTTGGCCATATGTTCAAAACGATCTTCGTTCCAAG 512 || ||| || ||||||||| ||||||||||| || ||||| |||||||| |||| ||| Sbjct 500 GTTAAGTCACTGATCGACAAAAAAGCTTGGCCTTACGTTCAGAACGATCTCCGTTT-AAG 558 Query 513 -GCTTCTTATCTTCGTTATGATCTTAACACAATCATTTCCTCCAAACCCAAGGATGAGAA 571 || || || |||||||| ||||||||||| | || ||| | || || || || ||||| Sbjct 559 AGCATCGTACCTTCGTTACGATCTTAACACCGTTATCTCCGCTAAGCCTAAAGAAGAGAA 618 Query 572 GAAGTCAC-TCAAGGATCTCACCACCAAGCTCTTCGATACCATCGACAATCT-GGATTAT 629 ||| || | || || || ||| |||||||||||| ||||||||||| || ||| ||| Sbjct 619 AAAGA-ACCTTAAAGAACTTACCGGCAAGCTCTTCGAAACCATCGACAA-CTTGGACTAT 676 Query 630 GCGGCGAAGAAGAAGAGTCCTTCGCAG--GCTGAGAAGTACTA-TGCTGAGACAGTCTCT 686 ||||||| | ||||| | | ||| ||||||||||| || | | || || ||||| Sbjct 677 GCGGCGAGGTCTAAGAG-CAGCC-CAGATGCTGAGAAGTATTACT-CAGAAACTGTCTCG 733 Query 687 -GCTTTGAACGAA-GTTCTTGCCAAGCTTGGTTAA 719 | ||||||| || ||||||||||||||||||||| Sbjct 734 AG-TTTGAAC-AATGTTCTTGCCAAGCTTGGTTAA 766 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33548166960 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5