BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21400.1
Length=2223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492743 jgi|Araly1|492743|fgenesh2_kg.7__2176__AT4G21410.1 1351 0.0
Ahg492744 jgi|Araly1|492744|fgenesh2_kg.7__2177__AT4G21400.1 1275 0.0
> Ahg492743 jgi|Araly1|492743|fgenesh2_kg.7__2176__AT4G21410.1
Length=2182
Score = 1351 bits (731), Expect = 0.0
Identities = 1157/1359 (85%), Gaps = 43/1359 (3%)
Strand=Plus/Plus
Query 1 ATGGAACATGTCAGAGTTATCTTTTTCTTCTTTGCTTGTGTCCTAAAGATTGTACCATTT 60
||||||||||||||||||||||| ||||||||||||||| |||||| | |||| ||| ||
Sbjct 17 ATGGAACATGTCAGAGTTATCTTCTTCTTCTTTGCTTGTTTCCTAACGCTTGTTCCA-TT 75
Query 61 ATC-TG-CTTAGCACA-GAAGGATAAATATGAGTTTCCTCCAGGTTTCAACTGTGTAGCT 117
|| || ||| || || | | ||| ||||||||| ||||| |||||||||||| |
Sbjct 76 -TCATGCCTTTGCTCAGGTA-GATTCCTATGAGTTTGATCCAGATTTCAACTGTGTTG-- 131
Query 118 AGTGGAGGCAATTTCACGGCCAACAGCTCTTTCGCTGGTAATCTCAACGGCCTTGTCTCC 177
| | | ||||| |||||||| |||||| |||| || || ||||||||| | |||||||||
Sbjct 132 A-TCGTGGCAACTTCACGGCGAACAGCACTTTTGCCGGGAATCTCAACCGACTTGTCTCC 190
Query 178 TCTCTCTCGTCACTCACATCCAAACCTTATGGCTTCTACAACCTCTCTTCTGGAGATTCA 237
|||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 191 TCTCTCTCCTCACTCAAATCCAAAGCTTATGGCTTCTACAACCTCTCTTCTGGAGACTCA 250
Query 238 TCTGGAGAAAGAGCTTATGCAATTGGTCTT-TGTAGAAGAGAAGTAAAAAGAGATGATTG 296
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 251 TCTGGAGAAAGAGCTTATGCAATTGGT-TTGTGTAGAAGAGAAGTCAAAAGAGATGATTG 309
Query 297 TCTCAGCTGCATTCAGATAGCTGCAAGAAACCTCATCGAGCAGTGTCCACTGACAAATCA 356
||||||||| ||||||| ||||||||||||||||| |||||||||| ||| | |||| ||
Sbjct 310 TCTCAGCTGTATTCAGACAGCTGCAAGAAACCTCACCGAGCAGTGTTCACGGTCAAAGCA 369
Query 357 AGCTGTTGTGTGGTACACACACTGTATGTTTCGTTACTCGAACATGATAATCTATGGAAG 416
|||||||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||
Sbjct 370 AGCTGTTGTGTGGTACACACACTGCATGTTTCGTTATTCGAACAGGACAATCTATGGAAG 429
Query 417 AAAAGAGACGACCCCAACTCTGTCTTTTCA-AGCCGGTAAAAATATATCAGCAAACAGAG 475
|||||| |||| || ||| | ||||| | |||||| || | ||||||||||||||||
Sbjct 430 AAAAGAAACGAATCCGACTAAGGCTTTT-ATTGCCGGTGAAGAGATATCAGCAAACAGAG 488
Query 476 ATGAGTTTGATCGTCTGCAGATAGAACTATTGGACAGACTCAAAGGGATTGCTGCAGCTG 535
|||| ||||| |||||||||| || ||||||||||||||||||||| ||||| || ||||
Sbjct 489 ATGACTTTGAGCGTCTGCAGAGAGGACTATTGGACAGACTCAAAGGAATTGCGGCGGCTG 548
Query 536 GTGGGCCAAATAGAAAATACGCTCAAGGGAGCGGTTCGGGTGT-GGCAGGGTACCCGCA- 593
||||||| ||||| |||||||||||||||| ||||| | | | ||| ||||| ||| |
Sbjct 549 GTGGGCCGAATAGGAAATACGCTCAAGGGAATGGTTCAGCT-TCGGCGGGGTA-CCGGAG 606
Query 594 ATTCTACGGAAGTG-CACACTGTACGCCGGATTTGTCTGAACAGGATTGTAATGACTGTC 652
|||||| |||| || | || |||||||||||||| |||||||||||||||||||| ||||
Sbjct 607 ATTCTATGGAACTGTC-CAATGTACGCCGGATTTATCTGAACAGGATTGTAATGATTGTC 665
Query 653 TAGTCTTTGGTTTTGAAAAGATCCCAGGTTGTTGTGCTGGTCAGGTTGGTCTTAGGTGGT 712
|||| ||||| ||||| || |||||| ||||||||| || | || |||||||| ||||||
Sbjct 666 TAGTTTTTGGGTTTGAGAATATCCCAAGTTGTTGTGATGCTGAGATTGGTCTTCGGTGGT 725
Query 713 TTTTTCCTAGTTGTAGCTACAGATTTGAGACCTGGCGATTCTACGAGTTCGATGCCGATC 772
||| ||||||||||| || | | |||||||| ||||||||||| ||||| |||||||| |
Sbjct 726 TTTCTCCTAGTTGTAACTTCCGGTTTGAGACGTGGCGATTCTATGAGTTTGATGCCGACC 785
Query 773 TAGAGCCTGATCCACCTGCTATTCAGCCTGCTGACTCCCCAACATCAGCTGCAAGAACTG 832
||||||| ||||||||||| |||||||||||||| || ||| ||||||||||||||||||
Sbjct 786 TAGAGCCAGATCCACCTGCAATTCAGCCTGCTGATTCACCACCATCAGCTGCAAGAACTG 845
Query 833 AGAGAACAGGAAAGGGCAAAGGTGGATCTAAAGTCATTGTTGCGATAGTCATCCCAATAG 892
|||| ||||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 846 AGAGGACAGGAAAGGGCAAAGGTGGATCTAAAGTCATTATCGCGATAGTCATCCCGATAG 905
Query 893 TTTTTGTTGCGTTATTTGCAATTTGCCTATGCTTGCTCTTGAAGTGGAAGAAGAACAAGT 952
|| ||||||||||| | ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 906 TTCTTGTTGCGTTACTCACAATTTGCCTATGCTTGGTCTTGAAGTGGAGGAAGAACAAGT 965
Query 953 CTGTAGGTAGAGTCAAAGGTAACAAACACAACCTTCTTCTTTTGGTTATCGTTATCTTGT 1012
||| || |||| ||||| | | || | ||| | | || ||| || | |
Sbjct 966 CTGGAGATAGAAACAAAGTTCTTGGG-A-AATCACCTT-TGTCGGG-ATCA--AT-T-GC 1017
Query 1013 TACAAAAGGATGAGTTCTC-A-----GATTCGTTGGTAGTTGACTTTGAAACTCTAAAGG 1066
| | |||||||||||| | || || | ||||| | |||||||||||||||
Sbjct 1018 --CGA--GGATGAGTTCTCGAACACAGAATCACTCTTAGTTCATTTTGAAACTCTAAAGA 1073
Query 1067 CAGCAACAGATAACTTTTCACCAGAAAATGAACTTGGACGTGGTGGGTTTGGCTCAGTTT 1126
||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct 1074 CAGCAACAGATAACTTTTCTTCAGAAAACGAACTTGGACGTGGTGGGTTTGGTTCAGTTT 1133
Query 1127 ATAAGGGTGTGTTCTCGGGTGGGCAAGAAATCGCGGTGAAA-AGATTATCGTGTACTTCA 1185
|||||||||| ||| | ||||||||||||||||| ||| ||||||||| ||| |||
Sbjct 1134 ATAAGGGTGTATTCCCTCACGGGCAAGAAATCGCGGT-AAAGAGATTATCGGGTAATTCT 1192
Query 1186 GGACAAGGAGACAGTGAATTCAAGAACGAAATTTTACTTCTTGCAAAGCTTCAACATAGG 1245
||||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1193 GGACAAGGAGACAACGAGTTCAAGAACGAAATATTACTACTTGCGAAGCTTCAACATAGG 1252
Query 1246 AACTTGGTTAGGCT-ATTAGGTTTTTGCATAGAAGGACAAGAACGAATCCTTGTCTATGA 1304
||| |||||||||| || |||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 1253 AACCTGGTTAGGCTTAT-AGGTTTCTGCATACAAGGACAAGAAAGAATCCTTGTCTATGA 1311
Query 1305 GTTCATCAAGAACGCTAGTCTTGACAA-TTTCATCTTCG 1342
|||||||||||| |||||||||||| | ||| |||||||
Sbjct 1312 GTTCATCAAGAATGCTAGTCTTGACCAGTTT-ATCTTCG 1349
Score = 859 bits (465), Expect = 0.0
Identities = 624/701 (89%), Gaps = 9/701 (1%)
Strand=Plus/Plus
Query 1435 AAGCGTCAACTTTTGGATTGGG-GAGTGCGATACAAAATGATAGGTGGAGTTGCTAGAGG 1493
|||||||||||||||||||||| | ||||||||||||||||| || ||| ||||||||||
Sbjct 1358 AAGCGTCAACTTTTGGATTGGGTG-GTGCGATACAAAATGATCGGAGGAATTGCTAGAGG 1416
Query 1494 ACTTCTTTATCTTCATGAAGACTCTCGTTACCGGATAATTCACCGTGATCTTAAAGCTAG 1553
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1417 ACTTCTTTATCTTCATGAAGACTCTCGTTTCCGGATAATTCACCGTGATCTTAAAGCTAG 1476
Query 1554 CAACATTCTTTTGGACCAAGAAATGAATCCGAAAATCGCAGATTTTGGATTAGCTAAACT 1613
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1477 CAACATTCTTTTGGACCAAGAAATGAATCTGAAAATCGCAGATTTTGGATTAGCTAAACT 1536
Query 1614 CTATGACACAGACCAAACT-TCGACACATCGATTTACAAGCAAAATTGCAGGAACTTACG 1672
|| |||||||| |||||| | |||||||||||| ||||||| ||||||||||||||||
Sbjct 1537 CTTTGACACAGGCCAAACCAT-GACACATCGATTCACAAGCAGGATTGCAGGAACTTACG 1595
Query 1673 GGTATATGGCTCCAGAATACGCTATTTACGGTCAATTCTCGGTGAAAACAGACGTTTTCA 1732
| ||||||||||| |||||||| || | || |||||||| ||||||||||| |||||||
Sbjct 1596 GATATATGGCTCCGGAATACGCAATGCATGGACAATTCTCTGTGAAAACAGATGTTTTCA 1655
Query 1733 GCTTCGGTGTATTAGTCATAGAGATCATTACGGGTAAGGGAAACAATAATGGTCGATCAA 1792
|||| |||||||||||||| ||||||||||| ||||| ||||||| |||||| | || |
Sbjct 1656 GCTTGGGTGTATTAGTCATTGAGATCATTACAGGTAAAAGAAACAACAATGGTGGGTCTA 1715
Query 1793 ATGATGACGAAGAGGCAGAAAATCTCCTTAGTTGGGTGTGGAGATGTTGGAGAGAAGACA 1852
||| ||| ||||| |||||| |||| |||||||||||||||||| | |||||||||||||
Sbjct 1716 ATGGTGATGAAGATGCAGAAGATCTTCTTAGTTGGGTGTGGAGAAGCTGGAGAGAAGACA 1775
Query 1853 TTATACTAAGCGTTATTGATCCGAGTCTAACCACGGGATCAAGAAGCGAGATCTTGAGAT 1912
|||||||||||| || ||||||||| ||||| | |||||||||| ||||||||||||||
Sbjct 1776 CTATACTAAGCGTGATCGATCCGAGTTTAACCGCAGGATCAAGAAACGAGATCTTGAGAT 1835
Query 1913 GCATACACATTGGTCTTTTATGTGTTCAAGAAAGTCCAGCGAGTAGACCAACTATGG-AT 1971
||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| |
Sbjct 1836 GCATACACATTGGTCTTTTATGTGTTCAAGAAAGTGCAGCGACTAGACCAACAATGGCAA 1895
Query 1972 TCGGTTGCTCTAATGCTCAATAGCTATTCCTATACTCTCCCAACGCCTTCAAGGCCCGCC 2031
||||| |||| ||||||||||||||||| | ||||||||| |||||||| ||||| ||
Sbjct 1896 -CGGTTTCTCTCATGCTCAATAGCTATTCTTTTACTCTCCCGACGCCTTCGAGGCCTGCG 1954
Query 2032 TTTGCGTTAGAGAGTGTCATGCCTTCGATGAATGTTTCTTCTTCCACAGAACCGTTATTA 2091
|||| |||||||||||| || ||||||| | |||||||||||| || || |||| |
Sbjct 1955 TTTGTGTTAGAGAGTGTGATACCTTCGA--A-TGTTTCTTCTTCAACGGATGGGTTACAA 2011
Query 2092 ATGTCCTTGAATGATGTCACTGTTTCTGAGTTATCTCCTCG 2132
||||| | |||||||||||||||||||||||| ||||||||
Sbjct 2012 ATGTCGTCGAATGATGTCACTGTTTCTGAGTTTTCTCCTCG 2052
> Ahg492744 jgi|Araly1|492744|fgenesh2_kg.7__2177__AT4G21400.1
Length=2165
Score = 1275 bits (690), Expect = 0.0
Identities = 792/841 (94%), Gaps = 7/841 (1%)
Strand=Plus/Plus
Query 1285 GAACGAATCCTTGTCTATGAGTTCATCAAGAACGCTAGTCTTGACAATTTCATCTTCGGT 1344
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1206 GAAAGAATCCTTGTCTATGAGTTCATCAAGAATGCTAGTCTTGACAATTTCATCTTCGGT 1265
Query 1345 AAT-TGTTTTCCGCCGTTTTCTCCATATGATGATCCTACCGTTCTGTTTTTTCTGCTCTG 1403
||| | ||||| ||||||| |||||||||||||||||||||||||| ||||| ||| |
Sbjct 1266 AATAT-TTTTCTGCCGTTTGCTCCATATGATGATCCTACCGTTCTG--TTTTCCACTCAG 1322
Query 1404 TGTTGATCTTTACGCTGTTACAGATCTTAAAAAGCGTCAACTTTTGGATTGGGGAGTGCG 1463
||||||||||| || ||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 1323 TGTTGATCTTTGTGCCGTTGCAGATCTTGAGAAGCGTCAACTTTTGGATTGGGGAGTGCG 1382
Query 1464 ATACAAAATGATAGGTGGAGTTGCTAGAGGACTTCTTTATCTTCATGAAGACTCTCGTTA 1523
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1383 ATACAAAATGATAGGCGGAGTTGCTAGAGGACTACTTTATCTTCACGAAGACTCTCGTTA 1442
Query 1524 CCGGATAATTCACCGTGATCTTAAAGCTAGCAACATTCTTTTGGACCAAGAAATGAATCC 1583
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1443 CCGAATTATTCACCGTGATCTTAAAGCTAGCAACATTCTTTTGGACCAAGAAATGAACCC 1502
Query 1584 GAAAATCGCAGATTTTGGATTAGCTAAACTCTATGACACAGACCAAACTTCGACACATCG 1643
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1503 AAAAATCGCAGATTTTGGATTAGCTAAACTCTTTGACACAGACCAAACTTCGACACATCG 1562
Query 1644 ATTTACAAGCAAAATTGCAGGAACTTACGGGTATATGGCTCCAGAATACGCTATTTACGG 1703
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 ATTCACAAGCAAAATTGCAGGAACTTACGGGTATATGGCTCCAGAATACGCTATTTACGG 1622
Query 1704 TCAATTCTCGGTGAAAACAGACGTTTTCAGCTTCGGTGTATTAGTCATAGAGATCATTAC 1763
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1623 TCAATTCTCGGTGAAAACAGACGTTTTCAGCTTCGGTGTATTAGTGATAGAGATCATTAC 1682
Query 1764 GGGTAAGGGAAACAATAATGGTCGATCAAATGATGACGAAGAGGCAGAAAATCTCCTTAG 1823
|||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1683 AGGTAAGGGAAACAACAATGGTCGATCAAATAATGACGAAGATGCAGAAAATCTCCTTAG 1742
Query 1824 TTGGGTGTGGAGATGTTGGAGAGAAGACATTATACTAAGCGTTATTGATCCGAGTCTAAC 1883
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1743 TTGGGTATGGAGATGTTGGAGAGAAGACATTATACTAAGCGTTATTGATCCGAGTTTAAC 1802
Query 1884 CACGGGATCAAGAAGCGAGATCTTGAGATGCATACACATTGGTCTTTTATGTGTTCAAGA 1943
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1803 CACGGGATCAAGAAGCGAGATCTTGAGGTGCATACACATTGGTCTTTTATGTGTTCAAGA 1862
Query 1944 AAGTCCAGCGAGTAGACCAACTATGGATTCGGTTGCTCTAATGCTCAATAGCTATTCCTA 2003
||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1863 GAGTGCAGCAAGTAGACCAACAATGGATTCGGTTGCTCTAATGCTCAATAGCTATTCCTA 1922
Query 2004 TACTCTCCCAACGCCTTCAAGGCCCGCCTTTGCGTTAGAGAGTGTCATGCCTTCGATGAA 2063
|||||| ||||||||||| ||||| ||||||| || |||||||||||||||||||||
Sbjct 1923 TACTCTTCCAACGCCTTCGAGGCCTGCCTTTGTGTCAGAGAGTGTCATGCCTTCGAT--- 1979
Query 2064 TGTTTCTTCTTCCACAGAACCGTTATTAATGTCCTTGAATGATGTCACTGTTTCTGAGTT 2123
|||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1980 TGTTTCTTCTTCGACAGAACCGTTACTAATGTCGTTGAATGATGTCACTGTTTCTGAGTT 2039
Query 2124 A 2124
|
Sbjct 2040 A 2040
Score = 1000 bits (541), Expect = 0.0
Identities = 584/605 (97%), Gaps = 1/605 (0%)
Strand=Plus/Plus
Query 1 ATGGAACATGTCAGAGTTATCTTTTTCTTCTTTGCTTGTGTCCTAAAGATTGTACCATTT 60
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1 ATGGAACATGTCAGAGTTATCTTTTTCTTCTTTGCTTGTGTCCTAACGTTTGTACCATTT 60
Query 61 ATCTGCTTAGCACAGAAGGATAAATATGAGTTTCCTCCAGGTTTCAACTGTGTAGCTAGT 120
||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ATCTGCTCAGCACAGACGGATAAATATGAGTTTCCTCCAAGTTTCAACTGTGTAGCTAGT 120
Query 121 GGAGGCAATTTCACGGCCAACAGCTCTTTCGCTGGTAATCTCAACGGCCTTGTCTCCTCT 180
|||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 121 GGAGGCAATTTCACGGCCAACAGCACTTTCGCCGATAATCTCAACGGCCTTGTCTCCTCT 180
Query 181 CTCTCGTCACTCACATCCAAACCTTATGGCTTCTACAACCTCTCTTCTGGAGATTCATCT 240
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTCTTCACTCACATCCAAACCTTATGGCTTCTACAACCTCTCTTCTGGAGATTCATCT 240
Query 241 GGAGAAAGAGCTTATGCAATTGGTCTTTGTAGAAGAGAAGTAAAAAGAGATGATTGTCTC 300
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 241 GGAGAAAGAGCTTATGCAATTGCTCTGTGTAGAAGAGAAGTAAAAAGAGATGATTGTCTC 300
Query 301 AGCTGCATTCAGATAGCTGCAAGAAACCTCATCGAGCAGTGTCCACTGACAAATCAAGCT 360
||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||
Sbjct 301 AGCTGCATTCAGATAGCTGCAAGAAACCTTATCGAGCAGTGTCCGCGGACAAAACAAGCT 360
Query 361 GTTGTGTGGTACACACACTGTATGTTTCGTTACTCGAACATGATAATCTATGGAAGAAAA 420
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTGTATGGTACACGCACTGTATGTTTCGTTACTCGAACATGATAATCTATGGAAGAAAA 420
Query 421 GAGACGACCCCAACTCTGTCTTTTCAAGCCGGTAAAAATATATCAGCAAACAGAGATGAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGACGACCCCAACTCTGTCTTTTCAAGCCGGTAAAAATATATCAGCAAACAGAGATGAG 480
Query 481 TTTGATCGTCTGCAGATAGAACTATTGGACAGACTCAAAGGGATTGCTGCAGCTGGTGGG 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGATCGTCTACAGATAGAACTATTGGACAGACTCAAAGGGATTGCTGCAGCTGGTGGG 540
Query 541 CCAAATAGAAAATACGCTCAAGGGAGCGGTTCGGGTGTGGCAGGGTACCCGCAATTCTAC 600
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 CCAA-TAGAAAATACGCTCAAGGGAGCGGTTCGGGTGTGGCGGGGTACCCGCAATTCTAC 599
Query 601 GGAAG 605
|||||
Sbjct 600 GGAAG 604
Score = 414 bits (224), Expect = 1e-114
Identities = 252/266 (95%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 637 GATTGTAATGACTGTCTAGTCTTTGGTTTTGAAAAGATCCCAGGTTGTTGTGCTGGTCAG 696
|||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| |||
Sbjct 604 GATTGTAATGACTGTCTAGTCTTTGGCTTTGAAAAGATCCCACGTTGTTGTGATGGCCAG 663
Query 697 GTTGGTCTTAGGTGGTTTTTTCCTAGTTGTAGCTACAGATTTGAGACCTGGCGATTCTAC 756
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 664 GTTGGTCTTAGGTGGTTTTTTCCTAGTTGTAGCTTCAGATTTGAGACGTGGCGATTCTAT 723
Query 757 GAGTTCGATGCCGATCTAGAGCCTGATCCACCTGCTATTCAGCCTGCTGACTCCCCAACA 816
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 724 GAGTTCGATTCCGATCTAGAGCCTGATCCACCTGCTATTCAGCCTGCTGACTCACCAACA 783
Query 817 TCAGCTGCAAGAACTGAGAGAACAGGAAAGGGCAAAGGTGGATCTAAAGTCATTGTTGCG 876
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 784 TCAGCTGCAAGAACTGAGAGAACAGGAAAGGGCAAAGGTGGATCTAAAGTCATTATCGCG 843
Query 877 ATAGTCATCCCAATAGTTTTTGTTGC 902
|||||| |||| |||||| |||||||
Sbjct 844 ATAGTCGTCCCGATAGTTCTTGTTGC 869
Score = 394 bits (213), Expect = 2e-108
Identities = 225/231 (97%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 1021 GATGAGTTCTCAGATTCGTTGGTAGTTGACTTTGAAACTCTAAAGGCAGCAACAGATAAC 1080
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 976 GATGAGTTCTCAGATTCGTTGCTAGTTGACTTTGAAACTCTAAAGGAAGCAACAGATAAC 1035
Query 1081 TTTTCACCAGAAAATGAACTTGGACGTGGTGGGTTTGGCTCAGTTTATAAGGGTGTGTTC 1140
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1036 TTTTCACCAGAAAACGAACTTGGACGTGGTGGCTTTGGCTCAGTTTATAAGGGTGTGTTC 1095
Query 1141 TCGGGTGGGCAAGAAATCGCGGTGAAAAGATTATCGTGTACTTCAGGACAAGGAGACAGT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1096 TCGGGTGGGCAAGAAATCGCGGTGAAAAGATTATCGTGTACTTCAGGACAAGGAGACATT 1155
Query 1201 GAATTCAAGAACGAAATTTTACTTCTTGCAAAGCTTCAACATAGGAACTTG 1251
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1156 GAATTCAAGAACGAAATTTTACTACTTGCAAAGCTTCAACATAGGAACTTG 1206
Score = 150 bits (81), Expect = 4e-35
Identities = 98/106 (92%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 2118 TGAGTTATCTCCTCGTTAGGAAGCTTAATCTGCATATCTTTTTAGTTTCTTCAATGATGG 2177
||| ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 2062 TGA-TTATCTCCTCGTTAGAAAGCTTAATCTGCATAT-GTTTTAGTTTCTTCACTGATGG 2119
Query 2178 ATTTTGTTTGTGTGATTTTTTAGACAGCTTGGCTTCATCTAGCTTT 2223
|||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 2120 GTTTTGTTTGTGTGATTTTTTAGACAGCTTGTCTTCATCTAGTTTT 2165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684268265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5