BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21410.1
Length=2220
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492743 jgi|Araly1|492743|fgenesh2_kg.7__2176__AT4G21410.1 3557 0.0
Ahg492744 jgi|Araly1|492744|fgenesh2_kg.7__2177__AT4G21400.1 828 0.0
> Ahg492743 jgi|Araly1|492743|fgenesh2_kg.7__2176__AT4G21410.1
Length=2182
Score = 3557 bits (1926), Expect = 0.0
Identities = 2102/2187 (96%), Gaps = 11/2187 (1%)
Strand=Plus/Plus
Query 16 aaaGCTTCAAGCTTTCATGGAACATGTCAGAGTTA---TCTTCTTCTTTGCTTGTTTCCT 72
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AAAGCTTCAAGCTTTCATGGAACATGTCAGAGTTATCTTCTTCTTCTTTGCTTGTTTCCT 60
Query 73 AACGCTTGCTCCATTTCATGCCTTTGCTCAGGTAGATTCCTATGAGTTTGATCCAGATTT 132
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACGCTTGTTCCATTTCATGCCTTTGCTCAGGTAGATTCCTATGAGTTTGATCCAGATTT 120
Query 133 CAACTGTGTTGATCGTGGCAACTTCACGGCGAACAGCACTTTTGCCGGGAATCTCAACCG 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAACTGTGTTGATCGTGGCAACTTCACGGCGAACAGCACTTTTGCCGGGAATCTCAACCG 180
Query 193 CCTTGTCTCCTCCCTCTCCTCACTCAAATCCCAAGCTTATGGCTTCTACAACCTCTCTTC 252
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 ACTTGTCTCCTCTCTCTCCTCACTCAAATCCAAAGCTTATGGCTTCTACAACCTCTCTTC 240
Query 253 TGGAGACTCATCTGGAGAAAGAGCTTATGCAATTGGTCTGTGTAGAAGAGAAGTCAAAAG 312
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 TGGAGACTCATCTGGAGAAAGAGCTTATGCAATTGGTTTGTGTAGAAGAGAAGTCAAAAG 300
Query 313 AGATGATTGTGTCAGCTGTATTCAGACAGCTGCAAGAAACCTCACCAAGCAGTGTCCGCT 372
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 301 AGATGATTGTCTCAGCTGTATTCAGACAGCTGCAAGAAACCTCACCGAGCAGTGTTCACG 360
Query 373 GACAAAACAAGCTGTTGTATGGTACACGCACTGTATGTTTCGTTACTCAAACAGGACAAT 432
| |||| ||||||||||| |||||||| ||||| ||||||||||| || |||||||||||
Sbjct 361 GTCAAAGCAAGCTGTTGTGTGGTACACACACTGCATGTTTCGTTATTCGAACAGGACAAT 420
Query 433 CTACGGAAGAAAAGAAACGAACCCGACTAAGGCTTTTATTGCTGGTGAAGAGATATCAGC 492
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 421 CTATGGAAGAAAAGAAACGAATCCGACTAAGGCTTTTATTGCCGGTGAAGAGATATCAGC 480
Query 493 AAACAGAGATGACTTTGAGCGTCTGCAGAGAGGACTATTGGACAGACTCAAAGGAATTGC 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAACAGAGATGACTTTGAGCGTCTGCAGAGAGGACTATTGGACAGACTCAAAGGAATTGC 540
Query 553 GGCTGCTGGTGGGCCTAATAGGAAATACGCTCAAGGAAACGGTTCAGCTTCGGCTGGGTA 612
||| ||||||||||| |||||||||||||||||||| || |||||||||||||| |||||
Sbjct 541 GGCGGCTGGTGGGCCGAATAGGAAATACGCTCAAGGGAATGGTTCAGCTTCGGCGGGGTA 600
Query 613 CCGGAGATTCTATGGAACTGTGCAATGTACGCCAGATTTGTCTGAACAGGATTGTAATGA 672
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 601 CCGGAGATTCTATGGAACTGTCCAATGTACGCCGGATTTATCTGAACAGGATTGTAATGA 660
Query 673 TTGTTTAGTTTTTGGGTTTGAGAATATTCCGAGTTGTTGTGATGCTGAGATTGGTCTTCG 732
|||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 661 TTGTCTAGTTTTTGGGTTTGAGAATATCCCAAGTTGTTGTGATGCTGAGATTGGTCTTCG 720
Query 733 GTGGTTTTCTCCTAGTTGTAACTTCCGGTTTGAGACGTGGAGATTCTACGAGTTTGATGC 792
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 721 GTGGTTTTCTCCTAGTTGTAACTTCCGGTTTGAGACGTGGCGATTCTATGAGTTTGATGC 780
Query 793 CGACCTAGAGCCAGATCCACCTGCAATTCAGCCTGCTGATTCACCACAATCAGCTGCAAG 852
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 CGACCTAGAGCCAGATCCACCTGCAATTCAGCCTGCTGATTCACCACCATCAGCTGCAAG 840
Query 853 AACTGAGAGGACAGGAAAGGGCAAAGGTGGATCTAAAGTCATTATCGCGATAGTCATCCC 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AACTGAGAGGACAGGAAAGGGCAAAGGTGGATCTAAAGTCATTATCGCGATAGTCATCCC 900
Query 913 GATACTTCTTGTTGCGTTACTCGCAATTTGCCTATGCTTGGTCTTGAAGTGGAGGAAGAA 972
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 901 GATAGTTCTTGTTGCGTTACTCACAATTTGCCTATGCTTGGTCTTGAAGTGGAGGAAGAA 960
Query 973 CAAGTCTGGATATAAAAACAAAGTTCTTGGGAAATCACCTTTGTCGGGTTCAATTGCCGA 1032
|||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 961 CAAGTCTGGAGATAGAAACAAAGTTCTTGGGAAATCACCTTTGTCGGGATCAATTGCCGA 1020
Query 1033 GGATGAGTTCTCGAACACAGAATCACTCTTAGTTCATTTTGAGACTCTAAAGACAGCAAC 1092
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1021 GGATGAGTTCTCGAACACAGAATCACTCTTAGTTCATTTTGAAACTCTAAAGACAGCAAC 1080
Query 1093 AGATAACTTTTCTTCAGAAAACGAACTTGGACGTGGTGGGTTTGGTTCAGTTTATAAGGG 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGATAACTTTTCTTCAGAAAACGAACTTGGACGTGGTGGGTTTGGTTCAGTTTATAAGGG 1140
Query 1153 TGTGTTCCCTCAGGGGCAAGAAATCGCGGTGAAGAGATTATCGGGTAATTCTGGACAAGG 1212
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1141 TGTATTCCCTCACGGGCAAGAAATCGCGGTAAAGAGATTATCGGGTAATTCTGGACAAGG 1200
Query 1213 AGACAACGAGTTCAAGAACGAAATATTACTACTTGCAAAGCTTCAACATAGGAACTTGGT 1272
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1201 AGACAACGAGTTCAAGAACGAAATATTACTACTTGCGAAGCTTCAACATAGGAACCTGGT 1260
Query 1273 CAGGCTTATAGGTTTCTGCATACAAGGAGAAGAAAGACTCCTTGTCTATGAGTTCATCAA 1332
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1261 TAGGCTTATAGGTTTCTGCATACAAGGACAAGAAAGAATCCTTGTCTATGAGTTCATCAA 1320
Query 1333 GAACGCTAGTCTTGACCAATTTATCTTCGATACTGAGAAGCGTCAACTTTTGGATTGGGT 1392
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GAATGCTAGTCTTGACCAGTTTATCTTCGATACTGAGAAGCGTCAACTTTTGGATTGGGT 1380
Query 1393 AGTGCGGTACAAAATGATCGGAGGAATTGCTAGAGGACTCCTTTATCTTCATGAAGACTC 1452
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1381 GGTGCGATACAAAATGATCGGAGGAATTGCTAGAGGACTTCTTTATCTTCATGAAGACTC 1440
Query 1453 TCGTTTCCGGATAATTCATCGTGATCTTAAAGCTAGCAACATTCTTTTGGACCAAGAAAT 1512
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TCGTTTCCGGATAATTCACCGTGATCTTAAAGCTAGCAACATTCTTTTGGACCAAGAAAT 1500
Query 1513 GAATCCGAAAATCGCAGATTTTGGATTAGCTAAACTCTTTGACTCAGGCCAAACCATGAC 1572
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1501 GAATCTGAAAATCGCAGATTTTGGATTAGCTAAACTCTTTGACACAGGCCAAACCATGAC 1560
Query 1573 ACATCGATTCACAAGCAGGATTGCAGGAACTTACGGATATATGGCTCCGGAATACGCAAT 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 ACATCGATTCACAAGCAGGATTGCAGGAACTTACGGATATATGGCTCCGGAATACGCAAT 1620
Query 1633 GCATGGACAATTCTCTGTGAAAACAGATGTTTTCAGCTTCGGTGTATTAGTCATTGAGAT 1692
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1621 GCATGGACAATTCTCTGTGAAAACAGATGTTTTCAGCTTGGGTGTATTAGTCATTGAGAT 1680
Query 1693 CATTACAGGTAAAAGAAACAACAATGGTGGATCGAATGGTGACGAAGATGCAGAAGATCT 1752
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 1681 CATTACAGGTAAAAGAAACAACAATGGTGGGTCTAATGGTGATGAAGATGCAGAAGATCT 1740
Query 1753 TCTTAGTTGGGTGTGGAGAAGCTGGAGAGAAGACACTATACTAAGCGTGATCGATCCGAG 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 TCTTAGTTGGGTGTGGAGAAGCTGGAGAGAAGACACTATACTAAGCGTGATCGATCCGAG 1800
Query 1813 TTTAACCGCAGGATCAAGAAATGAGATCTTGAGATGCATACACATTGGTCTTTTATGTGT 1872
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1801 TTTAACCGCAGGATCAAGAAACGAGATCTTGAGATGCATACACATTGGTCTTTTATGTGT 1860
Query 1873 GCAAGAAAGTGCAGCGACTAGACCAACAATGGCTACGGTTTCTCTCATGCTCAATAGCTA 1932
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1861 TCAAGAAAGTGCAGCGACTAGACCAACAATGGCAACGGTTTCTCTCATGCTCAATAGCTA 1920
Query 1933 TTCTTTTACCCTCCCGACGCCTTTGAGGCCTGCGTTTGTGTTGGAGAGTGTCGTCATACC 1992
||||||||| ||||||||||||| |||||||||||||||||| |||||||| | |||||
Sbjct 1921 TTCTTTTACTCTCCCGACGCCTTCGAGGCCTGCGTTTGTGTTAGAGAGTGT-G--ATACC 1977
Query 1993 TTCAAATGTTTCTTCTTCAACGGAAGGGTTACAAATGTCGTCAAATGATGTTACTGTTTC 2052
||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 1978 TTCGAATGTTTCTTCTTCAACGGATGGGTTACAAATGTCGTCGAATGATGTCACTGTTTC 2037
Query 2053 TGAGTTTTCTCCTCGTTAATCTGTAAATGTTTT-GATTCTTCTCTGAAAACCTTTGAAAT 2111
||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 2038 TGAGTTTTCTCCTCGATAATCTGTAAATGTTTTTGATTCTTCTCTGAAAGCCTTTGAAAT 2097
Query 2112 GGGTTTTGTTTGTGTGA-TTTTTCAGGCAGCCTGGCTTGATCTTGTTGTGAATAAA-ACA 2169
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2098 GGGTTTTGTTTGTGTGAATTTTTCAGGCAGCCTGGCTTGATCTTGTTGTGAATAAACACA 2157
Query 2170 TGAATGTGAAGCTGTGAGATACTTTTT 2196
||| |||||||||||||||| ||||
Sbjct 2158 --AATCTGAAGCTGTGAGATACGTTTT 2182
> Ahg492744 jgi|Araly1|492744|fgenesh2_kg.7__2177__AT4G21400.1
Length=2165
Score = 828 bits (448), Expect = 0.0
Identities = 613/694 (88%), Gaps = 5/694 (1%)
Strand=Plus/Plus
Query 1366 TGAGAAGCGTCAACTTTTGGATTGGGTAGTGCGGTACAAAATGATCGGAGGAATTGCTAG 1425
|||||||||||||||||||||||||| |||||| ||||||||||| || ||| |||||||
Sbjct 1350 TGAGAAGCGTCAACTTTTGGATTGGGGAGTGCGATACAAAATGATAGGCGGAGTTGCTAG 1409
Query 1426 AGGACTCCTTTATCTTCATGAAGACTCTCGTTTCCGGATAATTCATCGTGATCTTAAAGC 1485
|||||| ||||||||||| ||||||||||||| ||| || ||||| ||||||||||||||
Sbjct 1410 AGGACTACTTTATCTTCACGAAGACTCTCGTTACCGAATTATTCACCGTGATCTTAAAGC 1469
Query 1486 TAGCAACATTCTTTTGGACCAAGAAATGAATCCGAAAATCGCAGATTTTGGATTAGCTAA 1545
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1470 TAGCAACATTCTTTTGGACCAAGAAATGAACCCAAAAATCGCAGATTTTGGATTAGCTAA 1529
Query 1546 ACTCTTTGACTCAGGCCAAACCAT-GACACATCGATTCACAAGCAGGATTGCAGGAACTT 1604
|||||||||| ||| |||||| | |||||||||||||||||||| |||||||||||||
Sbjct 1530 ACTCTTTGACACAGACCAAACT-TCGACACATCGATTCACAAGCAAAATTGCAGGAACTT 1588
Query 1605 ACGGATATATGGCTCCGGAATACGCAATGCATGGACAATTCTCTGTGAAAACAGATGTTT 1664
|||| ||||||||||| |||||||| || | || |||||||| ||||||||||| ||||
Sbjct 1589 ACGGGTATATGGCTCCAGAATACGCTATTTACGGTCAATTCTCGGTGAAAACAGACGTTT 1648
Query 1665 TCAGCTTCGGTGTATTAGTCATTGAGATCATTACAGGTAAAAGAAACAACAATGGTGGAT 1724
||||||||||||||||||| || ||||||||||||||||| |||||||||||||| |||
Sbjct 1649 TCAGCTTCGGTGTATTAGTGATAGAGATCATTACAGGTAAGGGAAACAACAATGGTCGAT 1708
Query 1725 CGAATGGTGACGAAGATGCAGAAGATCTTCTTAGTTGGGTGTGGAGAAGCTGGAGAGAAG 1784
| ||| |||||||||||||||| |||| ||||||||||| |||||| | ||||||||||
Sbjct 1709 CAAATAATGACGAAGATGCAGAAAATCTCCTTAGTTGGGTATGGAGATGTTGGAGAGAAG 1768
Query 1785 ACACTATACTAAGCGTGATCGATCCGAGTTTAACCGCAGGATCAAGAAATGAGATCTTGA 1844
||| |||||||||||| || ||||||||||||||| | |||||||||| ||||||||||
Sbjct 1769 ACATTATACTAAGCGTTATTGATCCGAGTTTAACCACGGGATCAAGAAGCGAGATCTTGA 1828
Query 1845 GATGCATACACATTGGTCTTTTATGTGTGCAAGAAAGTGCAGCGACTAGACCAACAATGG 1904
| |||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||
Sbjct 1829 GGTGCATACACATTGGTCTTTTATGTGTTCAAGAGAGTGCAGCAAGTAGACCAACAATGG 1888
Query 1905 CTACGGTTTCTCTCATGCTCAATAGCTATTCTTTTACCCTCCCGACGCCTTTGAGGCCTG 1964
| ||||| |||| ||||||||||||||||| | ||| || || ||||||| ||||||||
Sbjct 1889 ATTCGGTTGCTCTAATGCTCAATAGCTATTCCTATACTCTTCCAACGCCTTCGAGGCCTG 1948
Query 1965 CGTTTGTGTTGGAGAGTGTCGTCATACCTTCAAATGTTTCTTCTTCAACGGAAGGGTTAC 2024
| ||||||| ||||||||| || ||||| | |||||||||||| || ||| |||||
Sbjct 1949 CCTTTGTGTCAGAGAGTGTC---ATGCCTTCGATTGTTTCTTCTTCGACAGAACCGTTAC 2005
Query 2025 AAATGTCGTCAAATGATGTTACTGTTTCTGAGTT 2058
|||||||| |||||||| ||||||||||||||
Sbjct 2006 TAATGTCGTTGAATGATGTCACTGTTTCTGAGTT 2039
Score = 610 bits (330), Expect = 1e-173
Identities = 521/611 (85%), Gaps = 21/611 (3%)
Strand=Plus/Plus
Query 32 ATGGAACATGTCAGAGTTATC---TTCTTCTTTGCTTGTTTCCTAACGCTTGCT-CCA-T 86
||||||||||||||||||||| ||||||||||||||| |||||||| ||| | ||| |
Sbjct 1 ATGGAACATGTCAGAGTTATCTTTTTCTTCTTTGCTTGTGTCCTAACGTTTG-TACCATT 59
Query 87 T-TCATGCCTTTGCTCAGGTAGATTCCTATGAGTTTGATCC-AGATTTCAACTGTGTTG- 143
| || || || || ||| ||| ||||||||| ||| || |||||||||||| |
Sbjct 60 TATC-TG-CTCAGCACAGACGGATAAATATGAGTTTCCTCCAAG-TTTCAACTGTGTAGC 116
Query 144 -A-TCGTGGCAACTTCACGGCGAACAGCACTTTTGCCGGGAATCTCAACCGCCTTGTCTC 201
| | | ||||| |||||||| ||||||||||| |||| ||||||||| ||||||||||
Sbjct 117 TAGTGGAGGCAATTTCACGGCCAACAGCACTTTCGCCGATAATCTCAACGGCCTTGTCTC 176
Query 202 CTCCCTCTCCTCACTCAAATCCCAAGCTTATGGCTTCTACAACCTCTCTTCTGGAGACTC 261
||| || || ||||||| |||| || ||||||||||||||||||||||||||||||| ||
Sbjct 177 CTCTCTTTCTTCACTCACATCCAAACCTTATGGCTTCTACAACCTCTCTTCTGGAGATTC 236
Query 262 ATCTGGAGAAAGAGCTTATGCAATTGGTCTGTGTAGAAGAGAAGTCAAAAGAGATGATTG 321
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 237 ATCTGGAGAAAGAGCTTATGCAATTGCTCTGTGTAGAAGAGAAGTAAAAAGAGATGATTG 296
Query 322 TGTCAGCTGTATTCAGACAGCTGCAAGAAACCTCACCAAGCAGTGTCCGCTGACAAAACA 381
| ||||||| ||||||| ||||||||||||||| | | |||||||||||| |||||||||
Sbjct 297 TCTCAGCTGCATTCAGATAGCTGCAAGAAACCTTATCGAGCAGTGTCCGCGGACAAAACA 356
Query 382 AGCTGTTGTATGGTACACGCACTGTATGTTTCGTTACTCAAACAGGACAATCTACGGAAG 441
||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||||
Sbjct 357 AGCTGTTGTATGGTACACGCACTGTATGTTTCGTTACTCGAACATGATAATCTATGGAAG 416
Query 442 AAAAGAAACGAACCCGACTAAGGCTTTT-ATTGCTGGTGAAGAGATATCAGCAAACAGAG 500
|||||| |||| ||| ||| | ||||| | || ||| || | ||||||||||||||||
Sbjct 417 AAAAGAGACGACCCCAACTCTGTCTTTTCAA-GCCGGTAAAAATATATCAGCAAACAGAG 475
Query 501 ATGACTTTGAGCGTCTGCAGAGAGGACTATTGGACAGACTCAAAGGAATTGCGGCTGCTG 560
|||| ||||| ||||| |||| || ||||||||||||||||||||| ||||| || ||||
Sbjct 476 ATGAGTTTGATCGTCTACAGATAGAACTATTGGACAGACTCAAAGGGATTGCTGCAGCTG 535
Query 561 GTGGGCCTAATAGGAAATACGCTCAAGGAAACGGTTCAGCT-TCGGCTGGGTACCGG-AG 618
||||||| ||||| |||||||||||||| | |||||| | | | ||| ||||||| | |
Sbjct 536 GTGGGCC-AATAGAAAATACGCTCAAGGGAGCGGTTCGGGTGT-GGCGGGGTACCCGCA- 592
Query 619 ATTCTATGGAA 629
|||||| ||||
Sbjct 593 ATTCTACGGAA 603
Score = 320 bits (173), Expect = 3e-86
Identities = 238/269 (88%), Gaps = 6/269 (2%)
Strand=Plus/Plus
Query 662 GATTGTAATGATTGTTTAGTTTTTGGGTTTGAGAATATTCCGA-GTTGTTGTGAT-GCTG 719
||||||||||| ||| |||| ||||| ||||| || | ||| | ||||||||||| ||
Sbjct 604 GATTGTAATGACTGTCTAGTCTTTGGCTTTGAAAAGA-TCCCACGTTGTTGTGATGGC-C 661
Query 720 AGATTGGTCTTCGGTGGTTTTCTCCTAGTTGTAACTTCCGGTTTGAGACGTGGAGATTCT 779
|| |||||||| ||||||||| ||||||||||| |||| | |||||||||||| ||||||
Sbjct 662 AGGTTGGTCTTAGGTGGTTTTTTCCTAGTTGTAGCTTCAGATTTGAGACGTGGCGATTCT 721
Query 780 ACGAGTTTGATGCCGACCTAGAGCCAGATCCACCTGCAATTCAGCCTGCTGATTCACC-A 838
| ||||| ||| |||| |||||||| ||||||||||| |||||||||||||| ||||| |
Sbjct 722 ATGAGTTCGATTCCGATCTAGAGCCTGATCCACCTGCTATTCAGCCTGCTGACTCACCAA 781
Query 839 CAATCAGCTGCAAGAACTGAGAGGACAGGAAAGGGCAAAGGTGGATCTAAAGTCATTATC 898
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 782 C-ATCAGCTGCAAGAACTGAGAGAACAGGAAAGGGCAAAGGTGGATCTAAAGTCATTATC 840
Query 899 GCGATAGTCATCCCGATACTTCTTGTTGC 927
||||||||| |||||||| ||||||||||
Sbjct 841 GCGATAGTCGTCCCGATAGTTCTTGTTGC 869
Score = 265 bits (143), Expect = 1e-69
Identities = 190/212 (90%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 1062 TAGTTCATTTTGAGACTCTAAA-GACAGCAACAGATAACTTTTCTTCAGAAAACGAACTT 1120
||||| | ||||| |||||||| || |||||||||||||||||| ||||||||||||||
Sbjct 998 TAGTTGACTTTGAAACTCTAAAGGA-AGCAACAGATAACTTTTCACCAGAAAACGAACTT 1056
Query 1121 GGACGTGGTGGGTTTGGTTCAGTTTATAAGGGTGTGTTCCCTC-AG-GGGCAAGAAATCG 1178
||||||||||| ||||| |||||||||||||||||||| ||| | |||||||||||||
Sbjct 1057 GGACGTGGTGGCTTTGGCTCAGTTTATAAGGGTGTGTT--CTCGGGTGGGCAAGAAATCG 1114
Query 1179 CGGTGAAGAGATTATCGGGTAATTCTGGACAAGGAGACAACGAGTTCAAGAACGAAATAT 1238
||||||| ||||||||| ||| ||| ||||||||||||| || |||||||||||||| |
Sbjct 1115 CGGTGAAAAGATTATCGTGTACTTCAGGACAAGGAGACATTGAATTCAAGAACGAAATTT 1174
Query 1239 TACTACTTGCAAAGCTTCAACATAGGAACTTG 1270
||||||||||||||||||||||||||||||||
Sbjct 1175 TACTACTTGCAAAGCTTCAACATAGGAACTTG 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83569997530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5