BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21450.3 Length=1385 Score E Sequences producing significant alignments: (Bits) Value Ahg492738 jgi|Araly1|492738|fgenesh2_kg.7__2171__AT4G21450.1 1170 0.0 Ahg490178 jgi|Araly1|490178|fgenesh2_kg.6__3312__AT4G05060.1 470 2e-131 Ahg490156 jgi|Araly1|490156|fgenesh2_kg.6__3290__AT4G05060.1 470 2e-131 > Ahg492738 jgi|Araly1|492738|fgenesh2_kg.7__2171__AT4G21450.1 Length=1259 Score = 1170 bits (633), Expect = 0.0 Identities = 713/751 (95%), Gaps = 8/751 (1%) Strand=Plus/Plus Query 595 ATGAGCCTGGGAAGCAAGTTAGGAGTGCTATTAAGATTAAAAATACAAGCAAATCACATG 654 ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct 514 ATGAGCCTGGGAAGCAAGTAAGGAGCGCTATTAAGATTAAAAATACCAGCAAATCACATG 573 Query 655 TAGCCTTCAAGTTTCAAACAACTGCGCCGAAGAGTTGCTTTATGCGTCCACCTGGTGCTA 714 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 574 TAGCCTTCAAGTTTCAAACAACTGCACCGAAGAGTTGCTTCATGCGTCCACCTGGTGCTA 633 Query 715 TTCTTGCTCCTGGAGAGACTATTATTGCTACTGTGTTTAAATTTGTTGAGCCTCCTGAGA 774 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 634 TTCTTGCTCCTGGAGAGACTATTATTGCTACTGTGTTCAAATTTGTTGAGCCTCCTGAGA 693 Query 775 ATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTGAAGTTTAAAATCATGAGCCTGAAGG 834 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | Sbjct 694 ATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTTAAATTTAAAATCATGAGCCTGAAAG 753 Query 835 TGAAAGGTCCAATGGACTATGTGCCTGAGCTGTTCGATGAGCAAAAGGATGATGTCTCTA 894 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 754 TGAAAGGTCCAATGGACTATGTGCCTGAGCTGTTTGATGAGCAAAAGGATGATGTGTCTA 813 Query 895 AGGAGCAAATATTGCGTGTGATTTTCTTGGATCCTGAGCGCTCCAACCCTGCATTGGAAA 954 | |||||||||||||||||||||||| ||||||| |||||| |||||||||| |||| | Sbjct 814 AAGAGCAAATATTGCGTGTGATTTTCCTGGATCCCGAGCGCCCCAACCCTGCGCTGGACA 873 Query 955 AACTGAAGCGTCAATTAGCAGAAGCGGATGCAGCGGTGGAGGCACGAAAGAAACCTCCAG 1014 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 874 AACTGAAGCGCCAGTTAGCAGAAGCGGATGCAGCGGTGGAGGCACGAAAGAAACCTCCAG 933 Query 1015 AGGAAACAGGTCCAAAGATGATTGGAGAAGGGCTTGTGATCGATGAATGGAAGGAGCGTA 1074 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 934 AGGAAACAGGTCCAAAGATCATTGGAGAAGGGCTTGTGATCGATGAATGGAAGGAGCGTC 993 Query 1075 GAGAGAGATATCTTGCACAGCAACAAGGCGAAGGAGCTGACTCTGTCTGAGAGACTAAAA 1134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 994 GAGAGAGATATCTTGCACAGCAACAAGGCGAAGGAGCTGACTCTGTCTGAGAGACTAAAA 1053 Query 1135 GAGTTTTCTCAGGACAAAAACAAGTGCGCTTGTGAAGATGAAGAAGAAG--G-GACCGCT 1191 ||||||||||||||||||||| |||| ||||||||||| |||||||||| | |||||| Sbjct 1054 GAGTTTTCTCAGGACAAAAACTAGTGTGCTTGTGAAGAAGAAGAAGAAGAAGAGACCGCG 1113 Query 1192 ATATTGAATTTATATGCTAACTTCTAGATTCATGATGCAATATATAAGGATCATGCTGGT 1251 ||||||||||||||||||||||||||||||||| ||||||| || | |||||||| |||| Sbjct 1114 ATATTGAATTTATATGCTAACTTCTAGATTCATAATGCAATCTA-A-GGATCATGTTGGT 1171 Query 1252 aaaaaaaaaaGACAATGAAGGAAACTTTTTTCATGTAAAAAAGAAATGTAAACTTGGGTT 1311 |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1172 AAAAAAAAAAGACAATGAAG-AAACTTTT--CATGTAAAAAAGAAATGTAAACTTGGGTT 1228 Query 1312 TGATGATAATGAATTGTTCATGTTAAGGACT 1342 ||||||||||||||||||||||||||| ||| Sbjct 1229 TGATGATAATGAATTGTTCATGTTAAGTACT 1259 Score = 710 bits (384), Expect = 0.0 Identities = 475/515 (92%), Gaps = 22/515 (4%) Strand=Plus/Plus Query 43 AACACGGACGCGAAATCAACCAATTAAATCCACTtctctctcaccatctcacgtccga-- 100 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 AACACGGACGCGAAATCAACCAATTAAATCCACTT-TCTCTCACCATCTCACGTCCGATC 59 Query 101 tctctc-ctctctgagctctcATCACGAGTCAACCCCTTTCTCCGTCGAAATTCGCATGC 159 |||||| |||||||||||||| ||||||||||||||| ||||| |||| ||||||||||| Sbjct 60 TCTCTCTCTCTCTGAGCTCTCTTCACGAGTCAACCCC-TTCTCTGTCGCAATTCGCATGC 118 Query 160 TTAAACTCT--GAGAGAAGAAGATGACTATGACGGAGGAGAAACCAACTTCCGACGGCAA 217 || | || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TTCACCTGTAAGAGAGAAGAAGATGACTATGACGGAGGAGAAACCAACTTCCGACGGCAA 178 Query 218 AGGAGGTTGGGGTTTCTTCAAGATTCCATTTCGTAACTCAAGCGGTCACAGAAACGCCGC 277 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 179 AGGAGGTTGGGGTTTCTTCAAGATTCCATTTCGTAACTCAAGTGGTCACGGAAACGCCGC 238 Query 278 TTCAAGTGCTGCTACTTCTCCGTTTCCATCTGGAGcttcttcttcttctacttcttctca 337 |||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| Sbjct 239 TTCAAGTGCTGCTACTTCTCCGTTTCCATCGGGTGCTTCGTCTTCTTCTACTTCTTCTCA 298 Query 338 tctacataaccatcatcaacatca---tca------tca--a-catca-c--catcagca 382 | | |||||||||||||||||||| ||| ||| | ||||| | |||||||| Sbjct 299 TATCCATAACCATCATCAACATCAACATCAACAACATCACCATCATCATCATCATCAGCA 358 Query 383 ccatcatcaGCTTGGTTATAACGGTCCTCACGGTGATGGATCGGGTCAAAATCAACATCC 442 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 359 TCATCATCAGCTTGGTTATAACGGTCCTCATGGTGATGGATCGGGTCAAAATCAACACCC 418 Query 443 GACTCCTTCTCCTTCAGTTTCATCTGTTGCTAAGTCTTTTCTTCCTACTAAACGAAGATT 502 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 419 GACTCCTTCTCCTTCAGTTTCTTCTGTTGCTAAGTCGTTTCTTCCTACTAAACGAAGATT 478 Query 503 GAAGCTTGATCCTTCTGAGAAACTCTATTTTCCTT 537 ||||||||||||||||||||||||||||||||||| Sbjct 479 GAAGCTTGATCCTTCTGAGAAACTCTATTTTCCTT 513 > Ahg490178 jgi|Araly1|490178|fgenesh2_kg.6__3312__AT4G05060.1 Length=1061 Score = 470 bits (254), Expect = 2e-131 Identities = 434/519 (84%), Gaps = 19/519 (4%) Strand=Plus/Plus Query 595 ATGAGCCTGGGAAGCAAGTTAGGAGTGCTATTAAGATTAAAAATACAAGCAAATCACATG 654 ||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||| Sbjct 392 ATGAGCCTGGGAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATG 451 Query 655 TAGCCTTCAAGTTTCAAACAACTGCGCCGAAGAGTTGCTTTATGCGTCCACCTGGTGCTA 714 |||| || |||||||||||||| | || ||||||||||| ||||| || ||||||||| Sbjct 452 TAGCGTTTAAGTTTCAAACAACAGAACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTA 511 Query 715 TTCTTGCTCCTGGAG-AGACTATTATTGCTACTGTGTTTAAATTTGTTGAGCCTCCTGAG 773 ||||| ||||||| | ||| ||||| || || || ||||| |||||||||||||||||| Sbjct 512 TTCTTTCTCCTGGGGAAGA-AATTATCGCAACCGTTTTTAAGTTTGTTGAGCCTCCTGAG 570 Query 774 AATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTGAAGTTTAAAATCATGAGCCTGAAG 833 |||||||| ||||| ||||| |||| |||| | || |||||||||||||||||||||||| Sbjct 571 AATAATGAAAAGCCGATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCCTGAAG 630 Query 834 GTGAAAGGT-CCAATGGACTATGTGCCTGAGCTGTTCGATGAGCAAAAGGATGATGTCTC 892 ||||| || |||| |||||| ||||||||||||| || |||||||| ||| ||||||| Sbjct 631 ATGAAA-GTCCCAACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTC 689 Query 893 TAAGGAGCAAATATTGCGTGTGATTTTCTTGGATCCTGAGCGCTCC-AAC-CC-TGCATT 949 | |||||||| || |||||||| | ||||||||||| || | || ||| || || | | Sbjct 690 TGAGGAGCAAGTAATGCGTGTGGTATTCTTGGATCCCGAAAAC-CCTAACTCCATG-A-T 746 Query 950 GGAAAAACTGAAGCGTCAATTAGCAGAAGCGGATGCAGC-GGTGGAGGCACGAAAGAAA- 1007 ||| ||| ||||| ||||||| || ||||||||||| || | | || ||||| |||||| Sbjct 747 GGAGAAATTGAAGAGTCAATTGGCTGAAGCGGATGCTGCAGAT-GAAGCACGGAAGAAAG 805 Query 1008 CCTCCAGA-GG-A-AACAGGTCCAAAGATGATTGGAGAAGGGCTTGTGATCGATGAATGG 1064 | | |||| || | ||||||||| |||||||||||||||||||||||||||||| Sbjct 806 CAT-CAGAGGGTATTGTTGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGG 864 Query 1065 AAGGAGCGTA-GAGAGAGATATCTTGCACAGCAACAAGG 1102 ||| | || | |||||||||||||||||||||||||||| Sbjct 865 AAGCAACG-ACGAGAGAGATATCTTGCACAGCAACAAGG 902 > Ahg490156 jgi|Araly1|490156|fgenesh2_kg.6__3290__AT4G05060.1 Length=1010 Score = 470 bits (254), Expect = 2e-131 Identities = 434/519 (84%), Gaps = 19/519 (4%) Strand=Plus/Plus Query 595 ATGAGCCTGGGAAGCAAGTTAGGAGTGCTATTAAGATTAAAAATACAAGCAAATCACATG 654 ||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||| Sbjct 341 ATGAGCCTGGGAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATG 400 Query 655 TAGCCTTCAAGTTTCAAACAACTGCGCCGAAGAGTTGCTTTATGCGTCCACCTGGTGCTA 714 |||| || |||||||||||||| | || ||||||||||| ||||| || ||||||||| Sbjct 401 TAGCGTTTAAGTTTCAAACAACAGAACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTA 460 Query 715 TTCTTGCTCCTGGAG-AGACTATTATTGCTACTGTGTTTAAATTTGTTGAGCCTCCTGAG 773 ||||| ||||||| | ||| ||||| || || || ||||| |||||||||||||||||| Sbjct 461 TTCTTTCTCCTGGGGAAGA-AATTATCGCAACCGTTTTTAAGTTTGTTGAGCCTCCTGAG 519 Query 774 AATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTGAAGTTTAAAATCATGAGCCTGAAG 833 |||||||| ||||| ||||| |||| |||| | || |||||||||||||||||||||||| Sbjct 520 AATAATGAAAAGCCGATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCCTGAAG 579 Query 834 GTGAAAGGT-CCAATGGACTATGTGCCTGAGCTGTTCGATGAGCAAAAGGATGATGTCTC 892 ||||| || |||| |||||| ||||||||||||| || |||||||| ||| ||||||| Sbjct 580 ATGAAA-GTCCCAACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTC 638 Query 893 TAAGGAGCAAATATTGCGTGTGATTTTCTTGGATCCTGAGCGCTCC-AAC-CC-TGCATT 949 | |||||||| || |||||||| | ||||||||||| || | || ||| || || | | Sbjct 639 TGAGGAGCAAGTAATGCGTGTGGTATTCTTGGATCCCGAAAAC-CCTAACTCCATG-A-T 695 Query 950 GGAAAAACTGAAGCGTCAATTAGCAGAAGCGGATGCAGC-GGTGGAGGCACGAAAGAAA- 1007 ||| ||| ||||| ||||||| || ||||||||||| || | | || ||||| |||||| Sbjct 696 GGAGAAATTGAAGAGTCAATTGGCTGAAGCGGATGCTGCAGAT-GAAGCACGGAAGAAAG 754 Query 1008 CCTCCAGA-GG-A-AACAGGTCCAAAGATGATTGGAGAAGGGCTTGTGATCGATGAATGG 1064 | | |||| || | ||||||||| |||||||||||||||||||||||||||||| Sbjct 755 CAT-CAGAGGGTATTGTTGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGG 813 Query 1065 AAGGAGCGTA-GAGAGAGATATCTTGCACAGCAACAAGG 1102 ||| | || | |||||||||||||||||||||||||||| Sbjct 814 AAGCAACG-ACGAGAGAGATATCTTGCACAGCAACAAGG 851 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51764642955 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5