BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21470.1 Length=1444 Score E Sequences producing significant alignments: (Bits) Value Ahg946041 jgi|Araly1|946041|scaffold_702270.1 1941 0.0 > Ahg946041 jgi|Araly1|946041|scaffold_702270.1 Length=1186 Score = 1941 bits (1051), Expect = 0.0 Identities = 1128/1166 (97%), Gaps = 2/1166 (0%) Strand=Plus/Plus Query 178 TAATGTCGATGAGCAATTCCTTGAAAAAGCTCTCTTCTTGTGTTCTTATTGATCTCGATG 237 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 22 TAATGTCGATGAGCAATTCTTTGAAAAAGCTCACTTCTTGTGTTCTTATTGATCTCGATG 81 Query 238 GTACCTTAATCAACACAGATGGTGTTGTTGGTGACATTTTGAGGAAATACTTGTGTAAAT 297 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 82 GTACCTTAATCAACACAGATGGTGTTGTTGGTGACATTTTGAGGAAGTATTTGTGTAAAT 141 Query 298 ATGGTAAACAGTGGGATGGAAGAGAATCATTGAAAATAGTT-GGCAAAACTCCAGTAGAA 356 ||||| |||||||||||||||||||||||||||| |||||| ||| |||||||| ||||| Sbjct 142 ATGGTCAACAGTGGGATGGAAGAGAATCATTGAAGATAGTTGGGC-AAACTCCATTAGAA 200 Query 357 GCTGCTACTACTATTGTTGAAGATTATGAACTTCCTTGTAAAGTTGATGAATTCAATTCT 416 ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 201 GCTGCTACTACCATTGTTGAAGATTATGGACTTCCTTGTAAAGTTGATGAATTCAATTCA 260 Query 417 GAATTCTACCCTTTGTTCTCTGCTCAGATGGACAAAATCAAATCTCTTCCTGGTGCCAAT 476 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 261 GAATTCTACCCTTTGTTCTCTGCTCAGATGGACAAAATCAAATCCCTTCCTGGTGCCAAT 320 Query 477 AGGTTGATTCGACATTTGAAGTGTCATGGAGTACCTGTGGCTTTGGCTTCCAATTCTTCA 536 | |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 321 CGTTTGATTCGGCATTTGAAGTGTCATGGAGTACCTGTGGCCTTGGCTTCCAATTCTTCA 380 Query 537 AGAGCAAATATTGAATCCAAAATTTCATATCATGAAGGGTGGAAGGAATGCTTCTCGGTT 596 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 381 AGAGCTAATATTGAATCCAAAATTTCACATCATGAAGGGTGGAAGGAATGCTTCTCGGTT 440 Query 597 ATTGTTGGTAGTGATGAAGTCTCTAAAGGAAAGCCTTCTCCTGATATTTTTCTCGAAGCA 656 ||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct 441 ATTGTCGGTAGTGATGAAGTTTCCAAAGGAAAGCCTTCTCCTGATATTTTTCTTGAAGCA 500 Query 657 GCGAAAAGATTGAAGAAAGATCCAGCTGACTGTTTGGTTATTGAAGATTCTGTGCCTGGT 716 |||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| Sbjct 501 GCGAAAAGATTGAATAAAGATCCAGCAGATTGTTTGGTTATTGAAGATTCTGTGCCTGGT 560 Query 717 GTTATGGCTGGTAAAGCTGCTGGGACAAAAGTGATTGCTGTTCCTTCTCTGCCTAAGCAA 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 561 GTTATGGCTGGTAAAGCTGCTGGGACAAAAGTGATTGCTGTTCCTTCTCTGCCTAAGCAA 620 Query 777 ACACATCTTTATACATCTGCAGATGAAGTCATCAATTCTCTACTCGACATAAGACTTGAA 836 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 621 ACACATCTTTATACATCTGCAGATGAAGTCATCAATTCTCTACTCGACATAAGGCCTGAA 680 Query 837 AAATGGGGACTTCCTCCATTCCAAGACTGGATAGAGAACACTTTACCAATTGATCCATGG 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 681 AAATGGGGACTTCCTCCATTCCAAGACTGGATAGAGAACACTTTACCAATTGATCCATGG 740 Query 897 CATATTGGAGGTCCAGTCATCAAAGGATTTGGCCGTGGCTCTAAAGTACTCGGAATCCCC 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 741 CATATTGGAGGTCCAGTCATCAAAGGATTTGGCCGTGGCTCTAAAGTACTCGGAATCCCC 800 Query 957 ACCGCTAACTTGTCAACAAAGGATTATGCGGATGAGCTAGTGGAACATCCTTCGGGAGTG 1016 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 801 ACAGCTAACTTGTCAACAAAGGATTATGCGGATGAGCTAGTTGAACATCCTTCGGGAGTG 860 Query 1017 TACTTTGGTTGGGCAGGCTTGGCAAAGAGAGGTGTCTTTAAAATGGTCATGAGCATTGGT 1076 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 861 TACTTTGGTTGGGCAGGCTTGGCAACGAGAGGTGTCTTTAAAATGGTCATGAGCATTGGT 920 Query 1077 TGGAATCCTTATTTCAATAACAAGGAGAAAACTATTGAACCATGGCTGCTTCACGATTTC 1136 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 921 TGGAATCCTTATTTCAACAACAAGGAGAAAACTATTGAACCATGGCTGCTTCACGATTTC 980 Query 1137 ACTGAGGATTTCTACGGAGAAGAGCTACGTCTTATTATCGTTGGCTATATACGCCCTGAG 1196 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 981 ACTGAGGATTTCTACGGAGAAGAGCTACGTCTTATAATTGTTGGCTATATACGCCCTGAG 1040 Query 1197 GCTAATTTCTCTTCACTGGAGAGTCTCATTGCAAAGATTCACGAGGACAGGGAAGTTGCA 1256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1041 GCTAATTTCTCTTCACTGGAGAGTCTCATTGCAAAGATTCACGAGGACAGGGAAGTTGCA 1100 Query 1257 GAGAAAGCTCTTGATCTTCCTTCGTATGCTAAGTTTAAGGGTGATCCTTATCTGACTAAA 1316 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1101 GAGAAAGCTCTTGATCTTCCATCGTATGCTAAGTTTAAGGGTGATCCTTATCTGACTAAA 1160 Query 1317 TGATAGAAGCTTTTATGAAAAGAATT 1342 ||||||||| |||||| |||||||| Sbjct 1161 GGATAGAAGCATTTATGTAAAGAATT 1186 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54011967410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5