BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21620.1 Length=686 Score E Sequences producing significant alignments: (Bits) Value Ahg946021 jgi|Araly1|946021|scaffold_702250.1 667 0.0 > Ahg946021 jgi|Araly1|946021|scaffold_702250.1 Length=437 Score = 667 bits (361), Expect = 0.0 Identities = 412/437 (94%), Gaps = 1/437 (0%) Strand=Plus/Plus Query 17 TAAATATCTACATTACCAAAAATGTTCACAAAATCTATCCTTTTGGCTTCTCTTCTTATC 76 |||||| ||||| |||| |||||| |||| ||||||||||||||||||||||| |||||| Sbjct 1 TAAATAACTACACTACCGAAAATGCTCACTAAATCTATCCTTTTGGCTTCTCTCCTTATC 60 Query 77 ATCATCCTCGTCTCTGCAACTGAATCAGCTCGTCAAAAGAGCGGGAACGATGGTTTAGGA 136 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATCATCTTCGTCTCTGCTACTGAATCAGCTCGTCAAAAGAGCGGGAACGATGGTTTAGGA 120 Query 137 TTCGGTGGTGTACCCGGATCCGGATTTATACCCGGGTTTGGAAACGGGTTTCCGGGGACT 196 |||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 121 TTCGGTGGAGTGCCCGGATCCGGATTTATACCCGGGTTTGGAGACGGGTTTCCGGGGACT 180 Query 197 GGAGTTGGTGGTGGATACGGTGGAGGGTTTGGTGGTCCTAGCGGAGGGTTTGGGAAAGGA 256 ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct 181 GGAGTTGGTGGAGGATACGGCGGAGGGTTTGGTGGTCCTAGCGGTGGATTTGGGAAAGGG 240 Query 257 GGTGTGGTGAGACCAACGGTTACTTGCAAAGAGAAAGGACCTTGTAACGGCAAGAAGCTT 316 ||||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||| Sbjct 241 GGTGTGGTGAGACCAACTGTGACTTGCAGAGAGAAAGGACCTTGTTACGGCAAGAAGCTG 300 Query 317 AGGTGTCCTGCTAAGTGTTTCAAATCTTTTAGCCGCTCCGGGAAAGGATACGGCGGTGGA 376 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 301 AGGTGTCCTGCTAAGTGTTTCAAATCTTTCAGCCGCTCCGGGAAAGGATACGGCGGTGGT 360 Query 377 GGTGGCGGTGGAGGATGTACTATGGATTGTAAGAAGAAGTGTATCGCTTATTGTTAAGAT 436 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 361 GGTGGCGGTGGAGGATGTACTATGGATTGTAAGAAGAAATGTATCGCTTATTGTTAAGAT 420 Query 437 ATAATAAA-GATCACAT 452 |||||||| |||||||| Sbjct 421 ATAATAAAAGATCACAT 437 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25199248137 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5