BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G21620.1

Length=686
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946021 jgi|Araly1|946021|scaffold_702250.1                        667    0.0  


> Ahg946021 jgi|Araly1|946021|scaffold_702250.1
Length=437

 Score =  667 bits (361),  Expect = 0.0
 Identities = 412/437 (94%), Gaps = 1/437 (0%)
 Strand=Plus/Plus

Query  17   TAAATATCTACATTACCAAAAATGTTCACAAAATCTATCCTTTTGGCTTCTCTTCTTATC  76
            |||||| ||||| |||| |||||| |||| ||||||||||||||||||||||| ||||||
Sbjct  1    TAAATAACTACACTACCGAAAATGCTCACTAAATCTATCCTTTTGGCTTCTCTCCTTATC  60

Query  77   ATCATCCTCGTCTCTGCAACTGAATCAGCTCGTCAAAAGAGCGGGAACGATGGTTTAGGA  136
            |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATCATCTTCGTCTCTGCTACTGAATCAGCTCGTCAAAAGAGCGGGAACGATGGTTTAGGA  120

Query  137  TTCGGTGGTGTACCCGGATCCGGATTTATACCCGGGTTTGGAAACGGGTTTCCGGGGACT  196
            |||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  121  TTCGGTGGAGTGCCCGGATCCGGATTTATACCCGGGTTTGGAGACGGGTTTCCGGGGACT  180

Query  197  GGAGTTGGTGGTGGATACGGTGGAGGGTTTGGTGGTCCTAGCGGAGGGTTTGGGAAAGGA  256
            ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| 
Sbjct  181  GGAGTTGGTGGAGGATACGGCGGAGGGTTTGGTGGTCCTAGCGGTGGATTTGGGAAAGGG  240

Query  257  GGTGTGGTGAGACCAACGGTTACTTGCAAAGAGAAAGGACCTTGTAACGGCAAGAAGCTT  316
            ||||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||| 
Sbjct  241  GGTGTGGTGAGACCAACTGTGACTTGCAGAGAGAAAGGACCTTGTTACGGCAAGAAGCTG  300

Query  317  AGGTGTCCTGCTAAGTGTTTCAAATCTTTTAGCCGCTCCGGGAAAGGATACGGCGGTGGA  376
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  301  AGGTGTCCTGCTAAGTGTTTCAAATCTTTCAGCCGCTCCGGGAAAGGATACGGCGGTGGT  360

Query  377  GGTGGCGGTGGAGGATGTACTATGGATTGTAAGAAGAAGTGTATCGCTTATTGTTAAGAT  436
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  361  GGTGGCGGTGGAGGATGTACTATGGATTGTAAGAAGAAATGTATCGCTTATTGTTAAGAT  420

Query  437  ATAATAAA-GATCACAT  452
            |||||||| ||||||||
Sbjct  421  ATAATAAAAGATCACAT  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25199248137


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5