BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21630.1
Length=2319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492710 jgi|Araly1|492710|fgenesh2_kg.7__2143__AT4G21650.1 2462 0.0
Ahg354619 jgi|Araly1|354619|fgenesh1_pg.C_scaffold_7001792 2045 0.0
Ahg354618 jgi|Araly1|354618|fgenesh1_pg.C_scaffold_7001791 1997 0.0
> Ahg492710 jgi|Araly1|492710|fgenesh2_kg.7__2143__AT4G21650.1
Length=2411
Score = 2462 bits (1333), Expect = 0.0
Identities = 1862/2108 (88%), Gaps = 73/2108 (3%)
Strand=Plus/Plus
Query 244 AGCAAAGACGACGCACATAACTCGCTGATCTACAGCTACCAATATGGATTCTCTGGTTTC 303
|||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 233 AGCAAAGAAGACGCACGTAACTCGCTGATCTACAGCTACCAACATGGATTCTCTGGTTTC 292
Query 304 GCGGCGCTTCTTACATCTTCACAAGCAAAGAAAATCTCAGAGCATCCAGAAGTAATCCAT 363
||||| ||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 293 GCGGCACTTCTTACATCATCACAAGCAAAGAAAATTTCAGAACATCCAGCAGTAATCCAT 352
Query 364 GTTATCCCGAACCGGATTCTGAAACTGAAAACCACAAGAACTTGGGATCATCTTGGCCTC 423
|||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 353 TTTATACCAAACCGGATTCTGAAACTGAAAACCACAAGAACTTGGGATCACCTTGGTCTC 412
Query 424 TCTCCAAATCCAACTTCTTTTTCTTCATCATCATCTGCAAAAGGTCTACTTCATGAAACC 483
|||||| | || ||||||||||||||| |||||||| ||||||||| |||||||| |||
Sbjct 413 TCTCCAGTTACATCTTCTTTTTCTTCATTATCATCTGTAAAAGGTCTTCTTCATGACACC 472
Query 484 AACATGGGCAGTGAAGCTATCATCGGCGTCGTTGATACCGGAATATGGCCGGAGTCAAAG 543
||| ||||||| |||||||| ||||| ||| | ||| ||||||||||||| |||||||||
Sbjct 473 AACTTGGGCAGAGAAGCTATTATCGGTGTCATCGATTCCGGAATATGGCCAGAGTCAAAG 532
Query 544 GTC-TTCAACGATCATGGTCTTGGACCAATACCTCAGCGTTGGAGAGGAAAATGTGAATC 602
| | |||||||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 533 G-CACTCAACGATCAAGGGCTTGGACCAATACCTAAGCGTTGGAGAGGAAAATGTGAATC 591
Query 603 AGGAGAACAGTTTAACGCCAAAATACATTGCAACAACAAGCTAATAGGAGCAAAGTACTA 662
|||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 592 AGGAGAACAGTTTAACTCCACAATACATTGCAACAACAAGCTAATAGGAGCTAAGTACTA 651
Query 663 TCTAAGCGGTCTACTCGCCG-AGACTGGAGGGAAATTCAACAGAACAATCATCCAAGATT 721
||||| |||| || |||| | | | |||||| ||||||||||||||||||||||||||||
Sbjct 652 TCTAAACGGTGTAGTCGCTGCA-ATTGGAGGAAAATTCAACAGAACAATCATCCAAGATT 710
Query 722 TCAAATCCAACAGAGATGCAATTGGTCACGGCACGCATACAGCCACAATAGCCGGTGGCT 781
| ||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 711 TGAAATCCACCAGAGATGCAAACGGTCACGGCACACATACAGCCACAATAGCTGGTGGCT 770
Query 782 CATTCGTTCCCAACGTGAGCTTCTATGGCCTAGCCCGAGGTACGGTCCGAGGTGGAGCCC 841
|||||||||||||||||||||||||||| |||||||||||| |||||||||||| || |
Sbjct 771 CATTCGTTCCCAACGTGAGCTTCTATGGTCTAGCCCGAGGTTTGGTCCGAGGTGGTGCTC 830
Query 842 CTCGGGCCCGAATAGCCTCATACAA-G-GTA-T-----GT--T-GGA-ATGTA-G-TG-G 886
|||||||||| |||||||| ||||| | ||| | || | ||| ||| | | | |
Sbjct 831 CTCGGGCCCGCATAGCCTCGTACAAGGCGTATTGGAACGTAATGGGAGATGAAGGAGGAG 890
Query 887 GATAC-GATGGTATATGCACAGTTGCTGATATGTGGAAGGCTTTTGATGATGCTATACAT 945
|| || ||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 891 GA-ACTGATGGAAGATGCACAACTGCTGATATGTGGAAGGCTTTTGATGATGCTATACAT 949
Query 946 GATCAAGTAGATGTTTTGTCGGTTTCTATTGGGGCG-GGAATTCCCGAGAATTCCGAGGT 1004
||| || ||||||||||||||||||||||||| | || ||||||||| ||||||||||
Sbjct 950 GATGGGGTTGATGTTTTGTCGGTTTCTATTGGGG-GAGGTATTCCCGAGGATTCCGAGGT 1008
Query 1005 CGATTCGGTCGACTT-TATCGCGGCTTTTCATGCGGTGGCCAAAGGGATTACAGTTGTGG 1063
||| | |||| || |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1009 TGATAAGCTCGA-TTATATCGCGGCTTTTCATGCGGTGGCTAAAGGGATTACGGTTGTGA 1067
Query 1064 CTGCGGGGGGTAATGATGGGCCTGGTGCTCAGAATATTACCAATGCTGCTCCTTGGCTCT 1123
|||| | |||||| || |||||||||||||||| | ||| ||||| |||||||||||| |
Sbjct 1068 CTGCTGCGGGTAACGAAGGGCCTGGTGCTCAGACTGTTAACAATGTTGCTCCTTGGCTTT 1127
Query 1124 TGACTGTTGCTGCTACTACTCTTGACCGGTCTTTTCCTACAAAGATCACACTTGGGAATA 1183
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1128 TGACTGTTGCTGCAACAACTCTTGACCGGTCTTTTCCTACAAAGATTACACTTGGGAATA 1187
Query 1184 ACCAAACCCTCTTCGCTGAATCTCTGTTCACTGGACCGGAGATTTCAACCAGTTTAGCAT 1243
| || |||||||| ||||||||||||||||| |||||||||||||||||| ||||||| |
Sbjct 1188 AACAGACCCTCTTTGCTGAATCTCTGTTCACGGGACCGGAGATTTCAACCGGTTTAGCTT 1247
Query 1244 TCTTGGA-T---TCA--GATCATAATGTTGATGTGAAGGGGAAAACAATTCTTGAATTCG 1297
||||||| | || ||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 1248 TCTTGGACTCAGACAGTGATGATAATGTTGATGTGAAGGGGAAAACAGTTCTTGTTTTCG 1307
Query 1298 ATAGTACTCATCCTTCTTCAATTGCAGGGAGAGGTGTAGTAGCAGTCATCTTAGCCAAAA 1357
||||| | || | || |||||||||||| |||||||| |||| | ||| ||||| |||
Sbjct 1308 ATAGTGC-CA--C-TC--CAATTGCAGGGAAAGGTGTAGCAGCATTAATCCTAGCCCAAA 1361
Query 1358 AGCCTGATGATCTTCTTGCTCGATACAACT-CTAT-ACCGTACATTTTCACAGATTATGA 1415
||||||||||||||||| |||||| ||| | | | | | | ||||||| | ||||| ||
Sbjct 1362 AGCCTGATGATCTTCTTTCTCGATGCAA-TGGT-TCAGCATGCATTTTCGCTGATTACGA 1419
Query 1416 GATTGGAACTCACATTTTACAATACATACGTACTACCAGATCTCCCACTGTGAGAATTAG 1475
| |||||||| | |||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 1420 GCTTGGAACTGAGATTTTAAAATACATACGTACCACCAGATCTCCCACGGTGAGAATTAG 1479
Query 1476 TGCTGCTACGACCCTAAACGGTCAGCCTGCAATGACTAAGGTTGCTGAATTCTCATCTAG 1535
||| |||||||| ||| |||||||||||||| |||||||||||||| |||||||| |||
Sbjct 1480 TGCGGCTACGACATTAACCGGTCAGCCTGCAACGACTAAGGTTGCTGCATTCTCATGTAG 1539
Query 1536 AGGGCCTAATTCTGTTTCACCAGCCATTCTCAAGCCTGATATAGCAGCTCCGGGTGTTAG 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1540 AGGGCCTAATTCTGTTTCACCAGCCATTCTCAAGCCTGATATAGCAGCTCCGGGTGTGAG 1599
Query 1596 CATACTCGCGGCAGTGAGTCCGCTTGATCCTGATGCGTTCAACGGATTTGGACTT-TATT 1654
|||||||||||| | ||||||||| |||| || | ||||||||||||||| | ||
Sbjct 1600 AATACTCGCGGCAATAAGTCCGCTTAATCCAGAAGAACAGAACGGATTTGGACTTCT-TT 1658
Query 1655 CAGGGACATCGATGTCGACTCCTGTTGTTTCTGGAATCATTGCTCTCCTAAAATCACTAC 1714
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1659 CAGGGACATCGATGTCAACTCCTGTTGTTTCTGGAATCATAGCTCTCCTAAAATCTCTAC 1718
Query 1715 ACCCTAACTGGTCTCCTGCTGCAATGAGATCAGCTTTGGTCACAACAGCTTGGAGGACAA 1774
||||||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1719 ACCCTAATTGGTCTCCTGCTGCAATGAGATCAGCTTTGGTCACAACAG-----A--AC-- 1769
Query 1775 GTCCATCCGGAGAACCCATTTTTGCTCAAGGATCAAACAAGAAGCTTGCAGATCCATTTG 1834
|||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1770 --CCAT------------TTTT-GCTGAAGGATCAAACAAGAAGCTTGCAGATCCATTTG 1814
Query 1835 ACTATGGAGGAGGACTTGTAAA-CCCTGATAAAGCTGCTCAACCTGGTCTTGTCTACGAT 1893
|||||||||||||||||||||| ||| || ||||||||| |||| |||||||| ||||||
Sbjct 1815 ACTATGGAGGAGGACTTGTAAATCCC-GAAAAAGCTGCTAAACCCGGTCTTGTATACGAT 1873
Query 1894 ATGGGGATCAAAGATTACATCAATTATATGTGTTCCGCGGGTTACATCGACTCTTCAATC 1953
||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1874 ATGGGGATCGACGATTACATCAATTATATGTGTTCCGCGGGTTACAACGACTCTTCAATC 1933
Query 1954 TCTCGTGTGCTTGGTAAAAAGACTAAATGCACAATTCCCAAGCCATCAATTCTTGATATC 2013
||||||||||| |||||||||||||| ||| ||||||| |||||||||| |||||||||
Sbjct 1934 TCTCGTGTGCTCGGTAAAAAGACTAAGTGCCCAATTCCTGAGCCATCAATGCTTGATATC 1993
Query 2014 AACTTACCTTCAATCACAATTCCAAATCTTGAGAAAGAAGTCACACTTACAAGAACTGTA 2073
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1994 AACTTACCTTCAATCACAATCCCAAATCTTGAGAAAGAGGTCACACTCACAAGAACTGTA 2053
Query 2074 ACCAATGTTGGACCCATCAAGTCAGTTTATAAAGCTGTAATCGAGTCTCCTCTCGGTATA 2133
|||||||||||||||||||||||||| || ||||| || |||||| ||||||||||||||
Sbjct 2054 ACCAATGTTGGACCCATCAAGTCAGTCTACAAAGCCGTGATCGAGCCTCCTCTCGGTATA 2113
Query 2134 ACTCTCACCGTGAACCCAACCACTCTGGTGTTT-AACTCTGCAGCAAAGAGAGTACTCAC 2192
|||||||||||||||||||||||||| || ||| || |||||||| ||||||||||||||
Sbjct 2114 ACTCTCACCGTGAACCCAACCACTCTCGT-TTTCAAATCTGCAGCTAAGAGAGTACTCAC 2172
Query 2193 TTTCTCGGTTAAGGCTAAAACGAGTCATAAAGTCAACAGTGGCTATTTCTTTGGAAGCTT 2252
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 2173 TTTCTCGGTTAAGGCTAAAACTAGTCATAAAGTGAACAGTGGCTACTTCTTTGGAAGCTT 2232
Query 2253 AACATGGACTGATGGTGTTCATGATGTTATAATACCTGTCTCTGTTAAGACAACGAT-TT 2311
||||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||
Sbjct 2233 AACATGGACTGATGGTGTTCATGATGTTATAATCCCTGTCTCTGTTAAGACT-CGTTATT 2291
Query 2312 CGATGTAA 2319
||||||||
Sbjct 2292 CGATGTAA 2299
> Ahg354619 jgi|Araly1|354619|fgenesh1_pg.C_scaffold_7001792
Length=1977
Score = 2045 bits (1107), Expect = 0.0
Identities = 1368/1491 (92%), Gaps = 30/1491 (2%)
Strand=Plus/Plus
Query 820 GGTACGGTCCGAGGTGGAGCCCCTCGGGCCCGAATAGCCTCATACAAGGTATGTTGGAAT 879
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 490 GGTACGGTCCGAGGTGGTGCCCCTCGGGCCCGCATAGCCTCATACAAGGTCTGTTGGAAT 549
Query 880 GTAGTGGGATACGATGGTATATGCACAGTTGCTGATATGTGGAAGGCTTTTGATGATGCT 939
||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 550 GTACTGGG---C---GGTATATGCTCAGTTGCTGATATGTGGAAGGCTTTTGATGATGCT 603
Query 940 ATACATGATCAAGTAGATGTTTTGTCGGTTTCTATTGGGGCGGGA-ATTCCCGAGAATTC 998
||||||||||| |||||||||||||||||||||||| ||| | | ||||||||| ||||
Sbjct 604 ATACATGATCAGGTAGATGTTTTGTCGGTTTCTATT-GGGAGCCATATTCCCGAGGATTC 662
Query 999 CGAGGTCGAT-TCGGTCGACTTTATCGCGGCTTTTCATGCGGTGGCCAAAGGGATTACAG 1057
||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 663 TGAGGTCGATAAC-GTCGACTTTATCGCGGCTTTTCATGCGGTGGCTAAAGGGATTACGG 721
Query 1058 TTGTGGCTGCGGGGGGTAATGATGGGCCTGGTGCTCAGAATATTACCAATGCTGCTCCTT 1117
|||||| ||||| ||| |||||||||||||||||||||| |||| |||||||||||| |
Sbjct 722 TTGTGGTTGCGGCGGGCAATGATGGGCCTGGTGCTCAGACTATTTGCAATGCTGCTCCAT 781
Query 1118 GGCTCTTGACTGTTGCTGCTACTACTCTTGACCGGTCTTTTCCTACAAAGATCACACTTG 1177
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GGCTCTTGAATGTTGCTGCAACTACTCTTGACCGGTCTTTTCCTACAAAGATCACACTTG 841
Query 1178 GGAATAACCAAACCCTCTTCGCTGAATCTCTGTTCACTGGACCGGAGATTTCAACCAGTT 1237
||||||||||||| |||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 842 GGAATAACCAAACTTTCTTCGCTGAATCTTTGTTGACTGGACCGGAGATTTCAACGGGTT 901
Query 1238 TAGCATTCTTGGATTCAGATCATAATGTTGATGTGAAGGGGAAAACAATTCTTGAATTCG 1297
|||| |||||||| | | |||||||||||||||||||||||||| |||||| |||
Sbjct 902 TAGCTTTCTTGGA-T--G---ATAATGTTGATGTGAAGGGGAAAACAGTTCTTGTTTTCC 955
Query 1298 ATAGTA-CTCATCCTTCTTCAATTGCAGGGAGAGGTGTAGTAGCAGTCATCTTAGCCAAA 1356
||| | |||| |||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 956 ATA-AAGCTCACCCTTCTTCAATTGCAGGGAGAGGTGTAGCAGCAGTCATCTTAGCCCAT 1014
Query 1357 AAGCCTGATGATCTTCTTGCTCGATACAACTCTATACCGTACATTTTCACAGATTATGAG 1416
|| |||||||||| |||| ||| |||||| | | | |||||||||||||||||||||
Sbjct 1015 AACCCTGATGATCGTCTTTCTCCATACAA---T-T--CTTACATTTTCACAGATTATGAG 1068
Query 1417 ATTGGAACTCACATTTTACAATACATACGTACTACCAGATCTCCCACTGTGAGAATTAGT 1476
||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1069 ATTGGAACTGACATTTTACAATACATACGTACTACCAGATCTCCGACGGTGAGAATTAGT 1128
Query 1477 GCTGCTACGACCCTAAACGGTCAGCCTGCAATGACTAAGGTTGCTGAATTCTCATCTAGA 1536
||||||||||| || | |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1129 GCTGCTACGACACTGACCGGTCAGCCTGCAACGACTAAGGTTGCTGCATTCTCATCTAGA 1188
Query 1537 GGGCCTAATTCTGTTTCACCAGCCATTCTCAAGCCTGATATAGCAGCTCCGGGTGTTAGC 1596
||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 1189 GGGCCTAATTCGGTTTCACCAGCCATTCTCAAGCCTGATATGGCAGCTCCAGGTGTTACC 1248
Query 1597 ATACTCGCGGCAGTGAGTCCGCTTGATCCTGATGCGTTCAACGGATTTGGACTT-TATTC 1655
|||||||||||||||||| ||||||||||| |||||| |||||||||||||||| | |||
Sbjct 1249 ATACTCGCGGCAGTGAGTTCGCTTGATCCTTATGCGTACAACGGATTTGGACTTCT-TTC 1307
Query 1656 AGGGACATCGATGTCGACTCCTGTTGTTTCTGGAATCATTGCTCTCCTAAAATCACTACA 1715
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1308 AGGGACATCGATGTCGACTCCTGTTGTTTCTGGAATCATAGCTCTCCTAAAATCTCTACA 1367
Query 1716 CCCTAACTGGTCTCCTGCTGCAATGAGATCAGCTTTGGTCACAACAGCTTGGAGGACAAG 1775
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 CCCTAATTGGTCTCCTGCTGCAATGAGATCAGCTTTGGTCACAACAGCTTGGAGGACAAG 1427
Query 1776 TCCATCCGGAGAACCCATTTTTGCTCAAGGATCAAACAAGAAGCTTGCAGATCCATTTGA 1835
|||||| |||||||| || |||||| |||||||||||||||||||||||||| |||||||
Sbjct 1428 TCCATCTGGAGAACCTATATTTGCTGAAGGATCAAACAAGAAGCTTGCAGATTCATTTGA 1487
Query 1836 CTATGGAGGAGGACTTGTAAACCCTGATAAAG-CTGCTCAACCTGGTCTTGTCTACGATA 1894
||||||||||||||||||||||||||| |||| |||| |||| || |||||||||||||
Sbjct 1488 CTATGGAGGAGGACTTGTAAACCCTGA-AAAGGCTGCAAAACCCGGACTTGTCTACGATA 1546
Query 1895 TGGGGATCAAAGATTACATCAATTATATGTGTTCCGCGGGTTACATCGACTCTTCAATCT 1954
|||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1547 TGGGGATCAACGATTACATCAATTACATGTGTTCCGCGGGTTACAACGACTCTTCAATCT 1606
Query 1955 CTCGTGTGCTTGGTAAAAAGACTAAATGCACAATTCCCAAGCCATCAATTCTTGATATCA 2014
|||||||||| |||||||||||||| ||| ||||||| |||||||||| ||||||||||
Sbjct 1607 CTCGTGTGCTCGGTAAAAAGACTAAGTGCCCAATTCCTGAGCCATCAATGCTTGATATCA 1666
Query 2015 ACTTACCTTCAATCACAATTCCAAATCTTGAGAAAGAAGTCACACTTACAAGAACTGTAA 2074
|||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 1667 ACTTACCTTCGATCACAATTCCAAATCTTGAAAAAGAGGTCACACTCACAAGAACTGTAA 1726
Query 2075 CCAATGTTGGACCCATCAAGTCAGTTTATAAAGCTGTAATCGAGTCTCCTCTCGGTATAA 2134
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1727 CCAATGTTGGACCCATCAAGTCAGTCTATAAAGCTGTGGTCGAGTCTCCTCTCGGTATAA 1786
Query 2135 CTCTCACCGTGAACCCAACCACTCTGGTGTTTAACTCTGCAGCAAAGAGAGT-ACTCACT 2193
|||||||||||||||||||||| || ||||||||||||||||| |||||| | |||||||
Sbjct 1787 CTCTCACCGTGAACCCAACCACACTCGTGTTTAACTCTGCAGCTAAGAGA-TCACTCACT 1845
Query 2194 TTCTCGGTTAAGGCTAAAACGAGTCATAAAGTCAACAGTGGCTATTTCTTTGGAAGCTTA 2253
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1846 TTCTCGGTTAAGGCTAAAACGAGTCATAAAGTCAACAGTGGCTACTTCTTTGGAAGCTTA 1905
Query 2254 ACATGGACTGATGGTGTTCATGATGTTATAATACCTGTCTCTGTTAAGACA 2304
|||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1906 ACATGGACTGATGGTGTTCATGATGTTACAATCCCTGTCTCTGTTAAGACA 1956
Score = 442 bits (239), Expect = 6e-123
Identities = 266/279 (95%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 244 AGCAAAGACGACGCACATAACTCGCTGATCTACAGCTACCAATATGGATTCTCTGGTTTC 303
|||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 211 AGCAAAGAAGACGCACATAACTCAATGATCTACAGCTACCAACATGGATTCTCTGGTTTC 270
Query 304 GCGGCGCTTCTTACATCTTCACAAGCAAAGAAAATCTCAGAGCATCCAGAAGTAATCCAT 363
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 GCGGCGCTTCTCACATCTTCACAAGCAAAGAAAATCTCAGAGCATCCAGAAGTAATCCAT 330
Query 364 GTTATCCCGAACCGGATTCTGAAACTGAAAACCACAAGAACTTGGGATCATCTTGGCCTC 423
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GTTATACCAAACCGGATTCTGAAACTGAAAACCACAAGAACTTGGGATCATCTTGGCCTC 390
Query 424 TCTCCAAAT-CCAACTTCTTTTTCTTCATCATCATCTGCAAAAGGTCTACTTCATGAAAC 482
||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 391 TCTCCAA-TGCCAACTTCTTTTTCTTCATCATCATCTTCAAAAGGTCTACTTCATGACAC 449
Query 483 CAACATGGGCAGTGAAGCTATCATCGGCGTCGTTGATAC 521
||||||||| |||||||||||||||||||| ||||||||
Sbjct 450 CAACATGGGAAGTGAAGCTATCATCGGCGTTGTTGATAC 488
Score = 265 bits (143), Expect = 1e-69
Identities = 175/191 (92%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 16 TCCACACTTGTGTTTCTATTGTCGATTGCTTTGGTCCTATTTCCTAAGACAGGGGTGAGT 75
|||| |||||||||||| ||| | |||||||||||| |||||| ||| |||| | |||||
Sbjct 22 TCCAAACTTGTGTTTCTCTTGGCAATTGCTTTGGTCTTATTTCTTAACACAGAGCTGAGT 81
Query 76 TTTCTTGCAGCTGAAGGAGCCTCAGACAGTGACAGCAAAGTTTATATAGTGTATCTTGGG 135
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 82 TTTCTCACAGCTGAAGGAGCCTCAGACAGTAACAGCAAAGTTTATATAGTGTATCTTGGC 141
Query 136 GAAAGGGAACACGATGATCCAGAACTTTTCACAGCTTCTCATCATCAAATGCTTGAATCA 195
||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 142 GAAAGAGAACACGATGATCCTGAACTTGTCACAGCTTCTCATCATCAAATGCTTGAATCA 201
Query 196 CTTCTTCAAAG 206
|||||||||||
Sbjct 202 CTTCTTCAAAG 212
> Ahg354618 jgi|Araly1|354618|fgenesh1_pg.C_scaffold_7001791
Length=2010
Score = 1997 bits (1081), Expect = 0.0
Identities = 1370/1507 (91%), Gaps = 29/1507 (2%)
Strand=Plus/Plus
Query 820 GGTACGGTCCGAGGTGGAGCCCCTCGGGCCCGAATAGCCTCATACAAGGTATGTTGGAAT 879
||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 490 GGTACGGTCCGAGGTGGTTCCCCTCGGGCCCGCATAGCCTCATACAAGGTCTGTTGGAAT 549
Query 880 GTAGTGGGATACGATGGTATATGCACAGTTGCTGATATGTGGAAGGCTTTTGATGATGCT 939
||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GTAGTGGGACACGAAGGTAAATGCACAGTTGCTGATATGTGGAAGGCTTTTGATGATGCT 609
Query 940 ATACATGATCAAGTAGATGTTTTGTCGGTTTCTATTGGGGCG-GGAATTCCCGA-GAATT 997
||||||||||| |||||||||||||| ||||||||||||| | || |||||||| ||| |
Sbjct 610 ATACATGATCAGGTAGATGTTTTGTCAGTTTCTATTGGGG-GAGGTATTCCCGAGGAA-T 667
Query 998 CCGAGGTCGATTCGGTCGA-CTTTATCGCGGCTTTTCATGCGGTGGCCAAAGGGATTACA 1056
||||||||||| | || | ||||||||||||||||||||||||||| |||||||||||
Sbjct 668 CCGAGGTCGATAAGCTC-AGCTTTATCGCGGCTTTTCATGCGGTGGCTAAAGGGATTACG 726
Query 1057 GTTGTGGCTGC-GGGGGGTAATGATGGGCCTGGTGCTCAGAATATTACCAATGCTGCTCC 1115
||||||||||| | |||| || || |||||||||||||||||| ||||||||||||||||
Sbjct 727 GTTGTGGCTGCTGCGGGG-AACGAAGGGCCTGGTGCTCAGAATGTTACCAATGCTGCTCC 785
Query 1116 TTGGCTCTTGACTGTTGCTGCTACTACTCTTGACCGGTCTTTTCCTACAAAGATCACACT 1175
|||||| |||||||||||||| ||||||||||||||||||||||||||||| || | |||
Sbjct 786 TTGGCTTTTGACTGTTGCTGCAACTACTCTTGACCGGTCTTTTCCTACAAAAATTATACT 845
Query 1176 TGGGAATAACCAAACCCTCTTCGCTGAATCTCTGTTCACTGGACCGGAGATTTCAACCAG 1235
||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 846 TGGGAATAAACAAACCCTCTTTGCTGAATCTCTGTTCACGGGACCGGAGATTTCAACGGG 905
Query 1236 TTTAGCATTCTTGGATTCAGATCA-TAATG-T--TGATGTGAAGGGGAAAACAATTCTTG 1291
|||||| |||||||| ||||| || | ||| | || | |||||||||||||| ||||||
Sbjct 906 TTTAGCTTTCTTGGACTCAGA-CAGTGATGATAATGTTATGAAGGGGAAAACAGTTCTTG 964
Query 1292 AATTCGATAGTACTCATCCTTCTTCAATTGCAGGGAGAGGTGTAGTAGCAGTCATCTTAG 1351
||||||| |||| ||||| ||| | ||||||||| ||| |||| |||||| |||||||
Sbjct 965 TTTTCGATACTACTTATCCTACTTTATTTGCAGGGAAAGGCGTAGCAGCAGTAATCTTAG 1024
Query 1352 CCAAAAAGCCTGATGATCTTCTTGCTCGATACAACTCTATACCGTACATTTTCACAGATT 1411
|| |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1025 CCCAAAAGCCTGATGATGTTCTTGCTCGATACAACCCGATACCGTACATTTTCACAGATT 1084
Query 1412 ATGAGATTGGAACTCACATTTTACAATACATACGTACTACCAGATCTCCCACTGTGAGAA 1471
||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1085 ATGAGATCGGAACTGACATTTTACAATACATACGTACTACCAGATCTCCCACGGTGAGAA 1144
Query 1472 TTAGTGCTGCTACGACCCTAAACGGTCAGCCTGCAATGACTAAGGTTGCTGAATTCTCAT 1531
|| ||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1145 TTTGTGCTGCTAGGACAATAACCGGTCAGCCTGCAATGACTAAGGTTGCTGCATTCTCAT 1204
Query 1532 CTAGAGGGCCTAATTCTGTTTCACCAGCCATTCTC---------AAG---CCTGATATAG 1579
|||||||||||||||| || ||||||||||||||| ||| ||||||||||
Sbjct 1205 CTAGAGGGCCTAATTCGGTGTCACCAGCCATTCTCAAGGTTATAAAGCCACCTGATATAG 1264
Query 1580 CAGCTCCGGGTGTTAGCATACTCGCGGCAGTGAGTCCGCTTGATCCTGATGCGTTCAACG 1639
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1265 CAGCTCCAGGTGTTAGCATACTCGCGGCAGTGAGTCCGCTTGATCCTGATGCGTACAACG 1324
Query 1640 GATTTGGACTTTATTCAGGGACATCGATGTCGACTCCTGTTGTTTCTGGAATCATTGCTC 1699
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1325 GATTTGGACTTCATTCAGGGACATCAATGTCGACTCCTGTTGTTTCTGGAATCATAGCTC 1384
Query 1700 TCCTAAAATCACTACACCCTAACTGGTCTCCTGCTGCAATGAGATCAGCTTTGGTCACAA 1759
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1385 TCCTCAAATCTCTACACCCTAATTGGTCTCCTGCTGCAATGAGATCAGCTTTGGTCACAA 1444
Query 1760 CAGCTTGGAGGACAAGTCCATCCGGAGAACCCATTTTTGCTCAAGGATCAAACAAGAAGC 1819
|||||||||||||||||||||| |||||||| || |||||| |||| |||||||||||||
Sbjct 1445 CAGCTTGGAGGACAAGTCCATCTGGAGAACCTATATTTGCTGAAGGGTCAAACAAGAAGC 1504
Query 1820 TTGCAGATCCATTTGACTATGGAGGAGGACTTGTAAA-CCCTGATAAAGCTGCTCAACCT 1878
||||||||||||||||||||||||||||||||||||| ||| || ||||||||| ||||
Sbjct 1505 TTGCAGATCCATTTGACTATGGAGGAGGACTTGTAAATCCC-GAAAAAGCTGCTAAACCC 1563
Query 1879 GGTCTTGTCTACGATATGGGGATCAAAGATTACATCAATTATATGTGTTCCGCGGGTTAC 1938
|||||||| ||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 1564 GGTCTTGTATACGATATGGGGATCGACGATTACATCAATTACATGTGTTCCGCGGGTTAT 1623
Query 1939 ATCGACTCTTCAATCTCTCGTGTGCTTGGTAAAAAGACTAAATGCACAATTCCCAAGCCA 1998
| |||||| ||||||||||||||||| ||||||||||| || ||| ||||||| ||||
Sbjct 1624 AACGACTCCTCAATCTCTCGTGTGCTCGGTAAAAAGACCAATTGCCCAATTCCTGGGCCA 1683
Query 1999 TCAATTCTTGATATCAACTTACCTTCAATCACAATTCCAAATCTTGAGAAAGAAGTCACA 2058
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1684 TCAATTCTTGATATCAACTTACCTTCAATCACAATTCCAAATCTTGAGAAAGAGGTCACA 1743
Query 2059 CTTACAAGAACTGTAACCAATGTTGGACCCATCAAGTCAGTTTATAAAGCTGTAATCGAG 2118
|| ||||| |||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 1744 CTCACAAGGACTGTAACCAATGTTGGACCCATCAAGTCAGTCTACAAAGCCGTGATCGAG 1803
Query 2119 TCTCCTCTCGGTATAACTCTCACCGTGAACCCAACCACTCTGGTGTTT-AACTCTGCAGC 2177
||||||||||||||||||||||||||||||||||||| || || ||| || ||||||||
Sbjct 1804 CCTCCTCTCGGTATAACTCTCACCGTGAACCCAACCACACTCGT-TTTCAAATCTGCAGC 1862
Query 2178 AAAGAGAGTACTCACTTTCTCGGTTAAGGCTAAAACGAGTCATAAAGTCAACAGTGGCTA 2237
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1863 TAAGAGAGTACTCACTTTCTCGGTCAAGGCTAAAACGAGTCATAAAGTCAACGGTGGCTA 1922
Query 2238 TTTCTTTGGAAGCTTAACATGGACTGATGGTGTTCATGATGTTATAATACCTGTCTCTGT 2297
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1923 CTTCTTTGGAAGCTTAACATGGACTGATGGTGTTCATGATGTTACAATCCCTGTCTCTGT 1982
Query 2298 TAAGACA 2304
|||||||
Sbjct 1983 TAAGACA 1989
Score = 425 bits (230), Expect = 6e-118
Identities = 264/281 (94%), Gaps = 0/281 (0%)
Strand=Plus/Plus
Query 244 AGCAAAGACGACGCACATAACTCGCTGATCTACAGCTACCAATATGGATTCTCTGGTTTC 303
|||||||| ||||||||||| || ||| |||||||||||||| |||||||||||||||||
Sbjct 211 AGCAAAGAAGACGCACATAAATCACTGGTCTACAGCTACCAACATGGATTCTCTGGTTTC 270
Query 304 GCGGCGCTTCTTACATCTTCACAAGCAAAGAAAATCTCAGAGCATCCAGAAGTAATCCAT 363
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 271 GCGGCGCTTCTTACATCTTCGCAAGCAAAGAAAATCTCAGAGCATCCATCAGTAATCCAT 330
Query 364 GTTATCCCGAACCGGATTCTGAAACTGAAAACCACAAGAACTTGGGATCATCTTGGCCTC 423
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GTTATACCAAACCGGATTCTGAAACTGAAAACCACAAGAACTTGGGATCATCTTGGCCTC 390
Query 424 TCTCCAAATCCAACTTCTTTTTCTTCATCATCATCTGCAAAAGGTCTACTTCATGAAACC 483
||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 391 TCTCCAATTCCTACTTCTTTTTCTTCATCGTCATCTGCAAAAGGTCTACTTCATGACACC 450
Query 484 AACATGGGCAGTGAAGCTATCATCGGCGTCGTTGATACCGG 524
|||||||| |||||| |||||||||| ||||||||||||||
Sbjct 451 AACATGGGAAGTGAAACTATCATCGGAGTCGTTGATACCGG 491
Score = 248 bits (134), Expect = 1e-64
Identities = 173/192 (90%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 16 TCCACACTTGTGTTTCTATTGTCGATTGCTTTGGTCC-TATTTCCTAAGACAGGGGTGAG 74
|||| |||||||||| | ||| | |||||||||| || |||||| ||| |||| | ||||
Sbjct 22 TCCAAACTTGTGTTTTTCTTGGCAATTGCTTTGG-CCTTATTTCTTAATACAGAGCTGAG 80
Query 75 TTTTCTTGCAGCTGAAGGAGCCTCAGACAGTGACAGCAAAGTTTATATAGTGTATCTTGG 134
||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 81 TTTTCTTACAGCTGAACGAGCCTCAGACAGTAACAACAAAGTTTATATAGTGTATATTGG 140
Query 135 GGAAAGGGAACACGATGATCCAGAACTTTTCACAGCTTCTCATCATCAAATGCTTGAATC 194
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 141 CCAAAGGGAACACGATGATCCAGAACTTGTCACAGCTTCTCATCATCAAATGCTTGAATC 200
Query 195 ACTTCTTCAAAG 206
||||||||||||
Sbjct 201 ACTTCTTCAAAG 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87340931785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5