BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21660.2
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946015 jgi|Araly1|946015|scaffold_702244.1 1836 0.0
Ahg895570 jgi|Araly1|895570|Al_scaffold_0006_3566 449 3e-125
> Ahg946015 jgi|Araly1|946015|scaffold_702244.1
Length=1796
Score = 1836 bits (994), Expect = 0.0
Identities = 1085/1130 (96%), Gaps = 2/1130 (0%)
Strand=Plus/Plus
Query 758 GGAAAGCGTGGGATAGAGAAGCAGCCATTTCATCTTCCTGATTTCATTGCTGCAACCGGA 817
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 667 GGAAAACGTGGTATAGAGAAGCAGCCATTTCATCTTCCTGATTTCATTGCTGCAACTGGA 726
Query 818 ATTGAGAAGATTAGACAGGCTTACATTGAGAAAGAAGATGGTAAGAAATTGAAGCAAAAG 877
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 727 ATTGAGAAAATTAGACAGGCTTACATTGAGAAAGAAGATGGTAAGAAGTTGAAGCAAAAG 786
Query 878 CAACGGGAGAGAATGCAACCAAAAATGGGAAAGATGGACATTGACTACCAGGTACTTCAT 937
||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 787 CAACGGGAGCGAATGCAACCAAAGATGGGAAAGATGGACATTGACTACCAGGTCCTTCAT 846
Query 938 GATGCATTTTTCAAATACCAAACAAAGCCTAAGCTGTCAGCTCTAGGCGATTTGTATTTT 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GATGCATTTTTCAAATACCAAACAAAGCCTAAGCTGTCAGCTCTAGGCGATTTGTATTTT 906
Query 998 GAAGGGAAAGAATTTGAGGTTAAACTGAGGGAAACGAAACCAGGGTTTTTGTCAAACGAC 1057
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 907 GAAGGGAAAGAATTTGAGGTTAAACTGAGGGAAACGAAACCAGGGCTTTTATCACACGAC 966
Query 1058 TTAAAAGAAGCTCTTGGTATGCCTGAAGGCGCTCCTCCCCCATGGCTGATTAACATGCAG 1117
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 967 TTAAAAGAAGCTCTTGGTATGCCTGAAGGCGCTCCTCCCCCATGGCTAATTAATATGCAG 1026
Query 1118 AGATATGGTCCGCCTCCTTCTTACCCACATCTGAAAATTCCTGGTTTGAATGCTCCTATT 1177
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1027 AGATATGGTCCTCCTCCTTCTTACCCACACCTGAAAATTCCTGGTTTGAATGCTCCTATT 1086
Query 1178 CCAATTGGAGCTAGCTTTGGTTTTCATGCTGGCGGCTGGGGGAAACCTCCAGTTGACGAA 1237
||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1087 CCACTTGGAGCTAGCTTTGGGTATCATGCTGGCGGCTGGGGGAAACCTCCAGTTGACGAA 1146
Query 1238 TATGGGCGTCCATTGTATGGAGATGTTTTTGGTGTCCAGCAACAAGATCAGCCTAACTAC 1297
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1147 TATGGGCGTCCATTGTATGGAGATGTCTTTGGTGTCCAGCAACAAGATCAGCCTAACTAT 1206
Query 1298 GAGGAGGAGCCAATTGATAAGAGCAAGCACTGGGGTGATTTagaggaagaggaagaagaa 1357
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1207 GAGGAGGAGCCTATTGATAAGAGTAAGCACTGGGGTGATTTAGAGGAAGAGGAAGAGGAA 1266
Query 1358 gaggaggaggaagaagaggaacaagaagaggagatggatgaagaggaactagaagaCGGC 1417
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 1267 GAGGAGGAGGAAGAAGAGGAACAAGAAGAGGAGATGGATGAAGAGGATCTACAAGATGGC 1326
Query 1418 ACTGAATCTGTTGATACACTGTCAAGCACTCCTACTGGTATAGAGACACCGGATGCAATT 1477
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1327 ACTGAATCTGTTGATACACTGTCAAGCACTCCTACTGGTATTGAGACACCAGATGCAATT 1386
Query 1478 GAACTTCGTAAGGATCAGAGAAAGGAACCTGATAGGGCTCTATACCAGGTACTCGAGGAA 1537
|||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||
Sbjct 1387 GAACTTCGTAAGGAACAGAGAAAGGAACCCGATAGGCCTCTATACCAGGTACTCGAAGAA 1446
Query 1538 AAGGGAGAGAGTGTTGCTCCTGGAACATTGCTGGGAACCTCACACACATACGTTATTAAG 1597
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1447 AAGGGAGAGAGTGTTGCTCCTGGAACAGTGCTGGGAACCACACACACATACGTTATTAAG 1506
Query 1598 ACTGGTACTCAAGAAAAGACGGGAGCCAAAAGGGTTGATTTGCTGAGAGGGCAGAAGACA 1657
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1507 ACTGGTACTCAAGACAAGACGGGAGCCAAAAGGGTTGATTTGCTGAGAGGGCAAAAGACA 1566
Query 1658 GACAGAGTGGATGTCAGCTTACAGCCAGAAGAGCTGGATGCTATGGAAAATGTTTTACCT 1717
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1567 GACAGAGTGGATGTCAGTTTACAGCCAGAAGAGCTGGATGCTATGGAAAATGTGTTACCT 1626
Query 1718 GCCAAGTATGAGGAGGCAAGAGAAGAGGAGAAATTGCGCAATAAGCCAGTGGACTTGAGT 1777
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1627 GCCAAGTATGAGGAGGCAAGAGAAGAAGAGAAATTGCGCAATAAGCCAGAGGACTTGAGT 1686
Query 1778 GACATGGTCGTCGAGCATGTGCAGCAGAATAGTAGGAAGAGGAAAATGCATGACAAGGAA 1837
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1687 GACATGGTCGTCGAGCATGTGCAGCAGAATAGCAGGAAGAGGAAAATGCATGATAAGGAA 1746
Query 1838 GGGAAGAAGAAGAAAGATTTCAAATTCTGAGGTGT-TC-TGGAAGAGACA 1885
||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1747 GGGAAGAAGAAGAAAGATTTCAAATTCTGAGGTGTGTTATGGAAGAGACA 1796
Score = 974 bits (527), Expect = 0.0
Identities = 624/671 (93%), Gaps = 6/671 (1%)
Strand=Plus/Plus
Query 50 GATTCAGAGAGAACACCGAATATGACCGCCGATTCAACCGTCGCACTCGTTCATAGCGTC 109
||||| |||| ||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 1 GATTCTGAGACTTCACCGAATATGACCGCCGATTCAGCCGTCGCACACGTTAATAGCGTC 60
Query 110 GTTTCTAACGGTGATGTCTCCAACGGAAACACCTCCGCTTCCTCT-AAGAAATCTCGTGA 168
||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 61 GTTTCTAACGGCGATGTCTCCAACGGAAACACCACCGCTTCCT-TGAAGAAATCTCGTGA 119
Query 169 GATTGACCGTCGCCGCCGCAGACGGAAGCAGAAGAAGAACAACAAAGCATCCCAAGCCGA 228
|| ||||||||||||||| |||||||||||||||||||||||||| |||| || |||||
Sbjct 120 GAGCGACCGTCGCCGCCGCCGACGGAAGCAGAAGAAGAACAACAAATCATCTCAGGCCGA 179
Query 229 TGTAGATGCATCGGACGTTTCTGCTGCTTCTGAATCCAAAGAGAATACAGATCCCCAGCC 288
||||||| ||||||||||||||| ||||||||| || || |||||||||||||| ||||
Sbjct 180 TGTAGATACATCGGACGTTTCTGGTGCTTCTGATTCTAAGGAGAATACAGATCCGCAGCA 239
Query 289 ACAGGTTTGTGAGCAGATTGTGATAGAGTATGTTCCAGAGCAAGCTGAATTTGAAGATGG 348
|||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 240 ACAGGTTTCTGAGCAGATTGTGATTGAGTATGTTCCAGAGCAGGCTGAATTTGAAGATGG 299
Query 349 TTTTAACGATGAGTTTAAGGAAATCTTCGAGAAGTTCAACTTCCGCGAACCTC-TTGCCT 407
||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||
Sbjct 300 TTTTAACGATGAGTTTAAGGAAATCTTTGAGAAGTTCAACTTCCGGGAACC-CATTGCCT 358
Query 408 CTGAAGAAGACGGTACGAAAGATGAGTCTGAGGAGAAAGAAGATGTCAAAAAGAAGGTTA 467
|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTGAGGAAGACGGTAAGAAGGATGAGTCTGAGGAGAAAGAAGATGTCAAAAAGAAGGTTA 418
Query 468 ACTCTGATTCT-GATTCAGACGACGACGAGCAGGATAATCAGAACAAAGAGAAAGGCATC 526
||||||||| | ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 419 ACTCTGATT-TAGATTCAGACGATGAAGAGCAGGATAACCAGAACAAAGAGAAAGGCATC 477
Query 527 TCTAATAAGAAGAAAAAGCTTCAACGGAGAATGAAGATTGCTGAGCTGAAGCAGGTTTCC 586
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 478 TCTAATAAGAAGAAAAAGCTTCAACGGAGGATGAAGATTGCTGAGCTGAAGCAGGTTTCC 537
Query 587 GCTAGGCCTGATGTTGTTGAGGTCTGGGACGCGACTTCAGCAGATCCAAAGCTGTTAGTG 646
|||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 538 GCTAGGCCTGATGTCGTTGAGGTCTGGGACGCTACTTCAGCAGATCCAAAGTTGTTGGTG 597
Query 647 TTTTTGAAGTCGTACCGGAATACAGTTCCTGTTCCAAGACATTGGTCGCAGAAGAGAAAA 706
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 TTTTTGAAGTCGTATCGTAATACAGTTCCTGTTCCAAGACATTGGTCCCAGAAGAGAAAA 657
Query 707 TATTTGCAGGG 717
|||||||||||
Sbjct 658 TATTTGCAGGG 668
> Ahg895570 jgi|Araly1|895570|Al_scaffold_0006_3566
Length=636
Score = 449 bits (243), Expect = 3e-125
Identities = 311/344 (90%), Gaps = 4/344 (1%)
Strand=Plus/Plus
Query 836 GCTTACATTGAGAAAGAAGATGGTAAGAAATTGAAGCAAAAGCAACGGGAGAGAATGCAA 895
|||||||||||||||||||||||||||||||| |||||||||||| | ||| | ||||||
Sbjct 1 GCTTACATTGAGAAAGAAGATGGTAAGAAATTAAAGCAAAAGCAATGTGAGCGTATGCAA 60
Query 896 CCAAAAATGGGAAAGATGGACATTGACTACCAGGTACTTCATGATGCATT-TTTCAAATA 954
||||| ||||||||||||||||||||||| ||||| ||||||||||| || ||| || ||
Sbjct 61 CCAAAGATGGGAAAGATGGACATTGACTATCAGGTCCTTCATGATGCCTTCTTT-AAGTA 119
Query 955 CCAAACAAAGCCTAAGCTGTCAGCTCTAGGCGATTTGTATTTTGAAGGGAAAGAATTTGA 1014
||||||||||||||||||| || |||| ||||| |||||||||||||||||| ||| ||
Sbjct 120 CCAAACAAAGCCTAAGCTGACATCTCTTGGCGAACTGTATTTTGAAGGGAAAGGATTCGA 179
Query 1015 GGTTAAACTGAGGGAAACGAAACCAGGGTTTTTGTCAAACGACTTAAAAGAAGCTCTTGG 1074
|||||| |||||||||||||||||||| ||||||| | ||| ||||||||||||||||
Sbjct 180 GGTTAAGCTGAGGGAAACGAAACCAGGAACTTTGTCACATGACCTAAAAGAAGCTCTTGG 239
Query 1075 TATGCCTGAAGGC-GCTCCTCCCCCATGGCTGATTAACATGCAGAGATATGGTCCGCCTC 1133
||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 240 TATGCCTGAAG-CTGCTCCTCCCCCATGGCTAATTAATATGCAGAGATATGGTCCGCCTC 298
Query 1134 CTTCTTACCCACATCTGAAAATTCCTGGTTTGAATGCTCCTATT 1177
| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 299 CGTCCTACCCACATCTGAAAATTCCTGGTTTAAATGCTCCTATT 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79456251070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5