BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G21920.1

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492676 jgi|Araly1|492676|fgenesh2_kg.7__2109__AT4G21920.1         556    3e-158


> Ahg492676 jgi|Araly1|492676|fgenesh2_kg.7__2109__AT4G21920.1
Length=387

 Score =  556 bits (301),  Expect = 3e-158
 Identities = 361/390 (93%), Gaps = 3/390 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAACTGCATATGCGTAACGGAAAAAACGACGACGTCGTGGTCAGGAGACGATAAT  60
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct  1    ATGGGAAACTGCATATGCGTAACGGAAAAAACGACGACCTCGTGGTCAGGAGACGATAGT  60

Query  61   GGATCATATAACAAGAGAAGGAGAAGAAGAAGATCCACCGTGGTTCACGACGACAACGAC  120
            ||||||||||||||||| ||||| ||||||||||||||||||||||||  | || |||||
Sbjct  61   GGATCATATAACAAGAGGAGGAGCAGAAGAAGATCCACCGTGGTTCAC--C-ACGACGAC  117

Query  121  GACGGAGAGAAGCTGCTCGGAGAAACAAGCAACGTTACGTCAACAAGTTCGTCATCGTCT  180
            ||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||
Sbjct  118  GACGGAGAGAAGCTGCTCGGAGAAACAAGCAACGTTACAACATCAAGTTCGTCATCGTCT  177

Query  181  TCTGAGAGAAGAGAGATTAAGATAAGGATAACGAAAAAGGAACTTGAAGATCTCATGAGA  240
            | || |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct  178  TGTGGGAGAAGAGAGATTAAGATAAGGATGACGAAGAAGAAACTTGAAGATCTCATGAGA  237

Query  241  AACATTGGTTTGAAGAGTTTAACGGCGGAAGAGATTCTTTCTAAGTTAATTTTCGAAGGT  300
            ||||||| |||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct  238  AACATTGATTTGAAGAGTTTGACGGCGGAAGAGATTCTTTCTAAGTTAATTTTTGACGGT  297

Query  301  GGAGACCAAATCGGATTCTCTGCGGTCGATGTGACGAATCACCACCAACCATGGAAACCG  360
            ||||| ||||||||||||||||| |||||| || ||||||||||||| || |||||||||
Sbjct  298  GGAGATCAAATCGGATTCTCTGCCGTCGATTTGTCGAATCACCACCAGCCGTGGAAACCG  357

Query  361  GTGTTGCAAAGCATACCGGAGATGGATTAG  390
            | ||| ||||||||||||||||| ||||||
Sbjct  358  GCGTTACAAAGCATACCGGAGATCGATTAG  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13964945574


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5