BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21920.1 Length=390 Score E Sequences producing significant alignments: (Bits) Value Ahg492676 jgi|Araly1|492676|fgenesh2_kg.7__2109__AT4G21920.1 556 3e-158 > Ahg492676 jgi|Araly1|492676|fgenesh2_kg.7__2109__AT4G21920.1 Length=387 Score = 556 bits (301), Expect = 3e-158 Identities = 361/390 (93%), Gaps = 3/390 (1%) Strand=Plus/Plus Query 1 ATGGGAAACTGCATATGCGTAACGGAAAAAACGACGACGTCGTGGTCAGGAGACGATAAT 60 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1 ATGGGAAACTGCATATGCGTAACGGAAAAAACGACGACCTCGTGGTCAGGAGACGATAGT 60 Query 61 GGATCATATAACAAGAGAAGGAGAAGAAGAAGATCCACCGTGGTTCACGACGACAACGAC 120 ||||||||||||||||| ||||| |||||||||||||||||||||||| | || ||||| Sbjct 61 GGATCATATAACAAGAGGAGGAGCAGAAGAAGATCCACCGTGGTTCAC--C-ACGACGAC 117 Query 121 GACGGAGAGAAGCTGCTCGGAGAAACAAGCAACGTTACGTCAACAAGTTCGTCATCGTCT 180 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 118 GACGGAGAGAAGCTGCTCGGAGAAACAAGCAACGTTACAACATCAAGTTCGTCATCGTCT 177 Query 181 TCTGAGAGAAGAGAGATTAAGATAAGGATAACGAAAAAGGAACTTGAAGATCTCATGAGA 240 | || |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| Sbjct 178 TGTGGGAGAAGAGAGATTAAGATAAGGATGACGAAGAAGAAACTTGAAGATCTCATGAGA 237 Query 241 AACATTGGTTTGAAGAGTTTAACGGCGGAAGAGATTCTTTCTAAGTTAATTTTCGAAGGT 300 ||||||| |||||||||||| |||||||||||||||||||||||||||||||| || ||| Sbjct 238 AACATTGATTTGAAGAGTTTGACGGCGGAAGAGATTCTTTCTAAGTTAATTTTTGACGGT 297 Query 301 GGAGACCAAATCGGATTCTCTGCGGTCGATGTGACGAATCACCACCAACCATGGAAACCG 360 ||||| ||||||||||||||||| |||||| || ||||||||||||| || ||||||||| Sbjct 298 GGAGATCAAATCGGATTCTCTGCCGTCGATTTGTCGAATCACCACCAGCCGTGGAAACCG 357 Query 361 GTGTTGCAAAGCATACCGGAGATGGATTAG 390 | ||| ||||||||||||||||| |||||| Sbjct 358 GCGTTACAAAGCATACCGGAGATCGATTAG 387 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13964945574 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5