BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21960.1 Length=1582 Score E Sequences producing significant alignments: (Bits) Value Ahg492673 jgi|Araly1|492673|fgenesh2_kg.7__2106__AT4G21960.1 2359 0.0 > Ahg492673 jgi|Araly1|492673|fgenesh2_kg.7__2106__AT4G21960.1 Length=1530 Score = 2359 bits (1277), Expect = 0.0 Identities = 1457/1540 (95%), Gaps = 27/1540 (2%) Strand=Plus/Plus Query 41 AAAA-ATAAATAAAGAAAACTCCATTTCCCTTTATTTAAGGAGGCTGCATTGCTTGCTCA 99 |||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3 AAAATAAAAATAAAGAAAACTCCATTTTCCTTTATTTAAGGAGGCTGCATTGCTTGCTCA 62 Query 100 CTGACTCAACTCAAGAGTGGTGTAGTGAGAGAAGAAAGATAGAGaaaaaaaaTGGGAGGC 159 |||||||||||||||| ||| | ||| |||||||| | | |||||||||||||||| Sbjct 63 CTGACTCAACTCAAGA---GTG-A---AGA-AAGAAAGAGACAAAAAAAAAATGGGAGGC 114 Query 160 AAAGGTGTGATGATGGTGGCGATACTTTGCCTTTGGGCACTCTCTGCAACATCTGAAGCA 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115 AAAGGTGTGATGATGGTGGCGATACTTTGCCTTTGGGCACTCTCTGCAACATCTGAAGCA 174 Query 220 GTAACAGAGGCTGAGCCAGGTTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCC 279 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 GTAACAGAGGCGGAGCCAGGTTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCT 234 Query 280 GAAGACATCGTCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCGCTTTC 339 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 GAAGATATCATCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCGCTTTC 294 Query 340 TCTTGGCTCCGTAACATCTTCCATGACTGCGCCGTTGAGTCATGTGATGCGTCGCTTTTG 399 ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct 295 TCTTGGCTCCGTAACATCTTCCACGACTGCGCCGTCGAGTCGTGTGATGCGTCGCTTTTG 354 Query 400 CTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGAACACGACAGGAGCTTCGGACTTAGA 459 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 355 CTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGAACATGACAGGAGCTTCGGACTGAGA 414 Query 460 AACTTTAGGTACATCGAGGAGATCAAGGAAGCTCTCGAGAGGGAGTGTCCTGGTGTTGTC 519 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 415 AACTTCAGGTACATCGAGGAGATCAAGGAAGCTCTTGAGAGGGAGTGTCCTGGTGTTGTC 474 Query 520 TCATGTTCTGACATTCTCGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTAGGAGGACCT 579 |||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 475 TCATGTTCCGACATTCTCGTCTTGTCGGCAAGAGAAGGAATCGAAGCAGTGGGAGGACCA 534 Query 580 TATATTCCTTTGAAGACAGGAAGGAGAGATGGACTTAAAAGCAGGACGGATATGCTCGAG 639 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 535 TATATTCCTTTGAAGACAGGAAGGAGAGATGGACTTAAAAGCAGGACCGATATGCTTGAG 594 Query 640 TCATATCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAAAAGTTCAAATCCATC 699 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 595 TCATATCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGACAAGTTCAAATCCATC 654 Query 700 GGTATCGACACTCCCGGCCTCGTCGCCCTCCTAGGGTCACACAGCGTGGGAAGAACTCAC 759 || |||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 655 GGAATCGACACTCCCGGCCTCGTTGCTCTCCTAGGGTCACACAGCGTGGGAAGAACTCAT 714 Query 760 TGTGTCAAGCTGGTCCATCGTTTGTACCCTGAGGTGGACCCGTCCTTAAACCCGGACCAC 819 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 715 TGTGTCAAGCTGGTCCATCGTTTGTACCCTGAGGTGGATCCGTCCTTGAACCCGGACCAC 774 Query 820 GTCCCTCACATGCTACACAAGTGTCCTGACTCGATCCCTGACCCAAAGGCGGTCCAGTAC 879 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 775 GTCCCTCACATGCTACACAAGTGTCCTGACTCTATCCCTGACCCAAAGGCGGTCCAGTAC 834 Query 880 GTGCGTAACGACCGTGGCACCCCCATGGTGCTAGACAACAATTACTACCGTAACATCCTA 939 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 GTGCGTAACGACCGTGGCACCCCCATGGTGCTAGACAACAATTACTACCGTAACATCCTA 894 Query 940 GACAACAAGGGTTTGCTCCTTGTGGACCATCAGCTCGCACACGACAAACGAACCAGACCA 999 ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| Sbjct 895 GACAACAAGGGTTTGCTTCTTGTGGACCATCAGCTCGCACACGACAAAAGAACTAGACCA 954 Query 1000 ATCGTTAAGAAGATGGCTAAGGACCAGGCCTACTTCTTCAAGGAGTTCACTAGGGCAATC 1059 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 955 ATTGTTAAGAAGATGGCTAAGGACCAGGCCTACTTCTTCAAGGAGTTCACTAGGGCAATC 1014 Query 1060 CAGATCTTATCCGAGAACAACCCCTTGACTGGCTCTAAGGGTGAGATCAGGAAGCAATGT 1119 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1015 CAGATCTTATCCGAGAACAACCCTTTGACTGGCTCTAAGGGTGAGATCAGGAAGCAATGC 1074 Query 1120 AATCTCGCAAACAAGAACCATTGAAGTTGGAAAAAGTGAGAAAGACAGGGGCTCTGGTGT 1179 ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 1075 AATCTTGCAAACAAGAACCATTGAAGTTGGAAAAAGTGAGAAAGGCAGAGGCTCTGGTGT 1134 Query 1180 GTTGAGTTCTCTGCTTGGTACGAACCAAGATGAATaaaaaaa-TCTTTTAAGTTAAATCA 1238 |||| | |||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 1135 GTTGGGATCTCTGCTTGGTACGAACTAAGATGAATAAAAAAAATCTTTTAAGTTAAATCA 1194 Query 1239 AAGAAAGGGTGATGATGAATACATCATGGTAGTGACCACCTCCTTCTTTTGTGTGTTC-- 1296 |||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| Sbjct 1195 AAGAAAGGGTGATGATGAATGCATCATGGTGGTGACCACATCCTTCTTTTGTGTGTTCTT 1254 Query 1297 -----AGCCTTAATGCTTTAATTATGATGTT-AGTGGCTTTGAGTTATTTAATCTAAATG 1350 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1255 GTTGCAGCCTTAATGCTTTAATTATGATGTTTAGTGGCTTTGAGTTATTTAATCTAAATG 1314 Query 1351 TTGGCTCTTCGTTGATTTTGGGTTTGTGGTGGGGGTGATATAATGATAATGGAAAGGATG 1410 |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 1315 TTGGCTCTTCGTTGATTTTGGGTTTGTGGTGGGGATGAGATAATGATAATGGAAAGGATG 1374 Query 1411 TATGATATGATGGATGGTGTT-GGGTATCAT-GTATGACGATGTAATGATAAGTAAACAT 1468 ||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||| Sbjct 1375 TATGATATGATGGATGGTGTTTGGGTA--ATTGTATGACGATGTAATAATAAGTAAACA- 1431 Query 1469 GTCCGAATCTTTTG-ATAATTTGTTCAACATGCATGGTATACATA-A-GTACTGTGTATG 1525 ||| ||||||||| |||| |||||||||||||||| |||| ||| | ||||||||| || Sbjct 1432 GTCGGAATCTTTTCTATAACTTGTTCAACATGCATGATATATATATAAGTACTGTGTTTG 1491 Query 1526 GGTGATATCGATCTATTTTACTGATCTCACCAAAGATTTT 1565 | |||||||||||||||||||||||||||| ||||||||| Sbjct 1492 G-TGATATCGATCTATTTTACTGATCTCACTAAAGATTTT 1530 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59268421220 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5