BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G21990.1

Length=1785
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945948 jgi|Araly1|945948|scaffold_702177.1                       2362    0.0  
  Ahg943230 jgi|Araly1|943230|scaffold_603774.1                       1142    0.0  
  Ahg475126 jgi|Araly1|475126|fgenesh2_kg.2__256__AT1G62180.1          785    0.0  


> Ahg945948 jgi|Araly1|945948|scaffold_702177.1
Length=1417

 Score = 2362 bits (1279),  Expect = 0.0
 Identities = 1372/1418 (97%), Gaps = 1/1418 (0%)
 Strand=Plus/Plus

Query  113   AGATTTGGTTTGGAGTGAAAATGGCACTAGCAATCAACGTTTCTTCATCTTCTTCTTCTG  172
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     AGATTTGGTTTGGTGTGAAAATGGCACTAGCAATCAACGTTTCTTCATCTTCTTCTTCTG  60

Query  173   CGATCTCAAGCTCTAGCTTCCCTTCTTCAGATCTCAAAGTAACAAAAATCGGATCATTGA  232
             |||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||
Sbjct  61    CGATCTCAAGCTCTAGCTTCCCTTCTTCCGATCTCAAAGTACCACAAATCGGATCATTGA  120

Query  233   GGTTATTGAATCGTACCAATGTCTCTGCGGCTTCTCTGAGTTTGTCCGGGAAGAGATCCT  292
             |||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct  121   GGTTATTGGATCGTATCAATGTCTCTGCGGCGTCTCTGAGTTTATCCGGGAAGAGATCCT  180

Query  293   CCGTGAAAGCTCTTAATGTGCAATCAATTACAAAGGAATCCATTGTTGCTTCTGAGGTTA  352
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181   CCGTGAAAGCTCTTAATGTGCAATCAATTACAAAGGAATCCATTGTTGCTTCTGAGGTTA  240

Query  353   CAGAGAAGCTAGATGTGGTGGAAGTTGAAGACTTTGAGGAACTAGCAAAGAGATTAGAGA  412
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  241   CAGAGAAGCTAGATGTCGTGGAAGTTGAAGACTTTGAGGAACTAGCAAAGAGATTAGAGA  300

Query  413   ATGCTTCTCCTCTTGAGATCATGGATAAAGCTCTTGAGAAGTTTGGGAATGACATTGCTA  472
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  301   ATGCTTCTCCTCTTGAGATCATGGATAAAGCTCTTGAGAAGTTTGGGAATGACATTGCAA  360

Query  473   TTGCCTTTAGTGGAGCTGAAGATGTTGCTCTGATTGAGTATGCTCATTTAACTGGAAGAC  532
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361   TTGCCTTTAGTGGAGCTGAAGATGTTGCTCTGATTGAGTATGCTCATTTAACTGGAAGAC  420

Query  533   CTTATAGGGTATTCAGTTTGGATACAGGGAGATTGAATCCAGAAACATATAGACTCTTCG  592
             |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  421   CTTATAGGGTTTTCAGTTTGGATACAGGGAGATTGAATCCAGAAACATACAGACTCTTCG  480

Query  593   ATACCGTGGAGAAACATTACGGTATTCGGATTGAGTATATGTTTCCTGATGCTGTTGAGG  652
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481   ATACCGTGGAGAAACATTACGGTATTCGGATTGAGTATATGTTTCCTGATGCTGTTGAGG  540

Query  653   TTCAAGCTTTAGTTAGGAACAAGGGTTTGTTCTCTTTCTATGAAGATGGTCACCAGGAGT  712
             ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541   TTCAAGCCTTGGTTAGGAACAAGGGTTTGTTCTCTTTCTATGAAGATGGTCACCAGGAGT  600

Query  713   GTTGCCGTATTAGAAAGGTGAGACCTTTGAGGCGTGCGTTGAAGGGTTTACGTGCTTGGA  772
             | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  601   GCTGCCGTATTAGAAAGGTGAGACCTTTGAGGCGTGCTTTGAAGGGCTTACGTGCTTGGA  660

Query  773   TCACTGGTCAGAGGAAAGATCAATCACCCGGGACAAGATCGGAGATTCCTGTTGTTCAGG  832
             ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct  661   TCACTGGTCAGAGGAAAGATCAATCGCCTGGGACAAGATCGGAGATTCCGGTTGTTCAGG  720

Query  833   TTGATCCAGTGTTTGAAGGATTAGATGGTGGAGTTGGTAGTTTGGTGAAGTGGAATCCGG  892
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  721   TTGATCCAGTGTTTGAAGGATTAGATGGTGGAGTTGGTAGTTTGGTGAAGTGGAATCCGG  780

Query  893   TTGCTAATGTTGAAGGGAATGATGTTTGGAATTTCTTGAGGACGATGGATGTTCCTGTCA  952
             |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  781   TTGCGAATGTTGAAGGGAATGATGTTTGGAATTTCTTGAGGACTATGGATGTTCCTGTCA  840

Query  953   ACACGCTTCACGCTGCGGGTTATGTTTCAATCGGATGTGAGCCATGCACGAGAGCGGTTT  1012
             |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct  841   ACACGCTTCATGCTGCTGGTTATGTTTCAATCGGATGTGAGCCATGTACGAGAGCAGTTT  900

Query  1013  TGCCGGGTCAGCATGAGAGAGAAGGGAGATGGTGGTGGGAAGATGCTAAGGCTAAAGAGT  1072
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  901   TGCCGGGTCAGCATGAGAGAGAAGGGAGATGGTGGTGGGAAGATGCTAAGGCTAAAGAGT  960

Query  1073  GTGGCCTTCACAAAGGGAATATCAAGGAGAATACCAATGGAAACGCAACCGCTAATGTCA  1132
             |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  961   GTGGACTTCACAAAGGGAATATCAAGGAGAATACCAATGGAAACGCAACTGCTAATGTCA  1020

Query  1133  ACGGGACAGCCTCAGTCGCGGATATCTTCAATAGCGAGAATGTTGTGAACTTGAGCAGGC  1192
             |||||||| || | || |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  1021  ACGGGACATCCACGGTGGCGGATATTTTCAACAGCGAGAATGTTGTGAACTTGAGCAGGC  1080

Query  1193  AAGGGATTGAGAATTTGATGAAGTTAGAGAACCGGAAAGAGGCTTGGATCGTTGTGCTTT  1252
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1081  AAGGGATTGAGAATTTGATGAAGTTAGAGAACCGGAAAGAGGCTTGGATCGTTGTGCTTT  1140

Query  1253  ATGCACCGTGGTGCCCGTTTTGTCAGGCAATGGAAGCTTCATTCGATGAATTGGCGGATA  1312
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct  1141  ATGCACCGTGGTGCCCGTTTTGTCAGGCAATGGAAGCTTCATTTGATGAATTGGCAGATA  1200

Query  1313  AGCTGGGAGGAAGTGGTGTGAAGGTTGCTAAGTTTAGAGCTGATGGTGACCAGAAGGACT  1372
             |||| || |||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1201  AGCTCGGCGGAAATGGCGTGAAGGTTGCTAAGTTTAGAGCTGATGGTGACCAGAAGGACT  1260

Query  1373  TTGCCAAAAAGGAGTTGCAGCTTGGAAGCTTTCCAACAATACTTGTGTTCCCAAAGAACT  1432
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1261  TTGCCAAAAAGGAGTTGCAGCTTGGAAGCTTTCCAACAATACTTGTGTTCCCAAAGAACT  1320

Query  1433  CTTCAAGACCAATCAAGTATCCATCAGAGAAGAGAGATGTTGATTCTTTGACATCTTTCT  1492
             |||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct  1321  CTTCGAGACCAATCAAGTATCCATCAGAGAAAAGAGATGTTGATTCCTTGACATCTTTCT  1380

Query  1493  TGAATCTTGTTCGGTAAATCCGCAATAAAATCCGCCGA  1530
             ||||||||||||||||||||||  | ||||||||||||
Sbjct  1381  TGAATCTTGTTCGGTAAATCCGTTA-AAAATCCGCCGA  1417


> Ahg943230 jgi|Araly1|943230|scaffold_603774.1
Length=1438

 Score = 1142 bits (618),  Expect = 0.0
 Identities = 979/1151 (85%), Gaps = 34/1151 (3%)
 Strand=Plus/Plus

Query  375   AGTTGAAGACTTTGAGGAACTAGCAAAG-AGATTAGAGAATGCTTCTCCTCTTGAGATCA  433
             ||||| |||  |||| || || |||||| || || ||||||||||| ||||||||||| |
Sbjct  290   AGTTG-AGA--TTGAAGAGCTTGCAAAGAAGCTT-GAGAATGCTTCACCTCTTGAGATTA  345

Query  434   TGGATAAAGCTCTTGAGAAGTTTGGGAATGACATTGCTATTGCCTTTAGTGGAGCTGAAG  493
             ||||||||||||||||||| |  |||||||| ||||||||||| |||||||| || ||||
Sbjct  346   TGGATAAAGCTCTTGAGAAATACGGGAATGATATTGCTATTGCATTTAGTGGTGCAGAAG  405

Query  494   ATGTTGCTCTGATTGAGTATGCTCATTTAACTGGAAGACC-TTATAGGGTATTCAGTTTG  552
             |||||||||| ||||||||||||||||| ||||| ||||| || ||| ||||| ||||||
Sbjct  406   ATGTTGCTCTAATTGAGTATGCTCATTTGACTGGGAGACCATT-TAGAGTATTTAGTTTG  464

Query  553   GATACAGGGAGATTGAATCCAGAAACATATAGACTCTTCGATACCGTGGAGAAACATTAC  612
             ||||||||||| |||||||| || || ||| |  | || ||| | ||||||||||| || 
Sbjct  465   GATACAGGGAGGTTGAATCCCGAGACGTATCGGTTTTTTGATGCGGTGGAGAAACACTAT  524

Query  613   GGTATTCGGATTGAGTATATGTTTCCTGATGCTGTTGAGGTTCAAGCTTTAGTTAGGAAC  672
             || ||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||| |
Sbjct  525   GGGATTAGAATTGAGTATATGTTTCCTGATTCTGTTGAGGTTCAAGGTTTAGTTAGGAGC  584

Query  673   AAGGGTTTGTTCTCTTTCTATGAAGATGGTCACCAGGAGTGTTGCCGTATTAGAAAGGTG  732
             ||||| ||||||||||||||||| |||||||| ||||||||||||||| || ||||||||
Sbjct  585   AAGGGATTGTTCTCTTTCTATGAGGATGGTCATCAGGAGTGTTGCCGTGTTCGAAAGGTG  644

Query  733   AGACCTTTGAGGCGTGCGT-TGAAGGG-TTTACGTGCTTGGATCACTGGTCAGAGGAAAG  790
             ||||||||||||||||| | | ||||| || | | |||||||| ||||||||||||||||
Sbjct  645   AGACCTTTGAGGCGTGC-TCTTAAGGGCTTAAAG-GCTTGGATTACTGGTCAGAGGAAAG  702

Query  791   ATCAATCACCCGGGACAAGATCGGAGATTCCTGTTGTTCAGGTTGATCCAGTGTTTGAAG  850
             |||| || || || || || || |||||||| || |||||||||||||| ||||||||||
Sbjct  703   ATCAGTCTCCAGGAACGAGGTCTGAGATTCCGGTGGTTCAGGTTGATCCTGTGTTTGAAG  762

Query  851   GATTAGATGGTGGAGTTGGTAGTTTGGTGAAGTGGAATCCGGTTGCTAATGTTGAAGGGA  910
             | || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct  763   GTTTGGATGGTGGAGTTGGTAGTTTGGTGAAGTGGAATCCGGTTGCGAATGTGGAAGGGA  822

Query  911   ATGATGTTTGGAATTTCTTGAGGACGATGGATGTTCCTGTCAACACGCTT-CACGCTGC-  968
             ||||||||||||| ||||||||||| ||||||||||| || |||||  || ||||| || 
Sbjct  823   ATGATGTTTGGAACTTCTTGAGGACTATGGATGTTCCGGTTAACACA-TTGCACGCGGCA  881

Query  969   GGGTTATGTTTCAATCGGATGTGAGCCATGCACGAGAGCGGTTTTGCCGGGTCAGCATGA  1028
             |||| || | || || ||||||||||| ||||||| ||||||||| ||||| ||||| ||
Sbjct  882   GGGT-ATATATCGATTGGATGTGAGCCTTGCACGAAAGCGGTTTTACCGGGCCAGCACGA  940

Query  1029  GAGAGAAGGGAGATGGTGGTGGGAAGATGCTAAGGCTAAAGAGTGTGGCCTTCACAAAGG  1088
             ||| ||||||||||||||||||||||||||||| || || || ||||| |||||||||||
Sbjct  941   GAGGGAAGGGAGATGGTGGTGGGAAGATGCTAAAGCCAAGGAATGTGGGCTTCACAAAGG  1000

Query  1089  GAATATCAAGGAGAATACCAATG--GA-AACGCAACCGCT-AATGTCAACGGGACAGCCT  1144
             |||| ||||||| || |||  ||  |  |||| || ||   |||  |||    || || |
Sbjct  1001  GAATGTCAAGGAAAACACCGCTGATGCTAACGTAAACGGGGAATC-CAAAA--AC-GC-T  1055

Query  1145  CAGTCGCGGATATCTTCAATAGCGAGAATGTTGTGAACTT-GAGCAGGCAAGGGATTGAG  1203
               || || |||||||| || || |||||| |||| ||||| |||||||||||||||||||
Sbjct  1056  --GTTGCAGATATCTTTAAGAGTGAGAATCTTGT-AACTTTGAGCAGGCAAGGGATTGAG  1112

Query  1204  AATTTGATGAAGTTAGAGAACCGGAAAGAGGCTTGGATCGTTGTGCTTTATGCACCGTGG  1263
             |||||||||||||| |||||||| |||||| |||||||||| ||||||||||| ||||||
Sbjct  1113  AATTTGATGAAGTTGGAGAACCGTAAAGAGCCTTGGATCGTCGTGCTTTATGCTCCGTGG  1172

Query  1264  TGCCCGTTTTGTCAGGCAATGGAAGCTTCAT-TCGATGAATTGGCGGATAAGCTGGGAGG  1322
             ||||| |||||||| || |||||||| || | | |||||| ||||||||||  |||  ||
Sbjct  1173  TGCCCCTTTTGTCAAGCCATGGAAGCATCGTAT-GATGAACTGGCGGATAAATTGGCTGG  1231

Query  1323  AAGTGGTG-TGAAGGTTGCTAAGTTTAGAGCTGATGGTGACCAGAAGGACTTTGCCAAA-  1380
             |||||| | | |||||||| || || ||||||||||||||||||||||| ||||| ||  
Sbjct  1232  AAGTGG-GATTAAGGTTGCAAAATTCAGAGCTGATGGTGACCAGAAGGATTTTGCTAAGC  1290

Query  1381  AAGGAGTTGCAGCTTGGAAGCTTTCCAACAATACTTGTGTTCCCAAAGAACTCTTCAAGA  1440
             ||| | |||||||| || ||||| || || |||||||| ||||| |||||||||||||||
Sbjct  1291  AAGAA-TTGCAGCTCGGTAGCTTCCCGACCATACTTGTCTTCCCCAAGAACTCTTCAAGA  1349

Query  1441  CCAATCAAGTATCCATCAGAGAAGAGAGATGTTGATTCTTTGACATCTTTCTTGAATCTT  1500
             || ||||||||||| || |||||||||||||| ||||||||||| || ||||||||||||
Sbjct  1350  CCGATCAAGTATCCGTCTGAGAAGAGAGATGTCGATTCTTTGACTTCGTTCTTGAATCTT  1409

Query  1501  GTTCGGTAAAT  1511
             || || |||||
Sbjct  1410  GTCCGATAAAT  1420


> Ahg475126 jgi|Araly1|475126|fgenesh2_kg.2__256__AT1G62180.1
Length=1629

 Score =  785 bits (425),  Expect = 0.0
 Identities = 909/1134 (80%), Gaps = 68/1134 (6%)
 Strand=Plus/Plus

Query  373   GAAGTTGAAGACTTTGAGGAACTAGC-AAAGAGATTAG-AGAATGCTTCTCCTCTTGAGA  430
             |||||||||||||||||| |||| || ||| || || | || |||||||||| ||||| |
Sbjct  351   GAAGTTGAAGACTTTGAGCAACTTGCTAAAAAGCTT-GAAG-ATGCTTCTCCACTTGAAA  408

Query  431   TCATGGATAAAGCTCTTGAGAAGTTTGGGA-ATGACATTGCTATTGCCTTTAGTGGAGCT  489
             |||||||||||||||||||||||||| ||| | || || || ||||| |||||||| |||
Sbjct  409   TCATGGATAAAGCTCTTGAGAAGTTT-GGAGACGAAATCGCAATTGCTTTTAGTGGTGCT  467

Query  490   GAAGATGTTGC-TCTGATTGAGTATGCTCATTTAACTGG-AAGACCTTATAGGGTATTCA  547
             ||||||||||| | |||| ||||| |||| ||||||||| ||| |||| |||||| || |
Sbjct  468   GAAGATGTTGCAT-TGATCGAGTACGCTCGTTTAACTGGAAAG-CCTTTTAGGGTTTTTA  525

Query  548   GTTTGGATACAGGGAGATTGAATCCAGAAACATATAGACTCTTCGATACCGTGGAGAAAC  607
             |||| ||||||||||| || || || ||||| || |||||||| ||| | || ||||| |
Sbjct  526   GTTTAGATACAGGGAGGTTAAACCCGGAAACGTACAGACTCTTTGATGCTGTCGAGAAGC  585

Query  608   ATTACGGTATTCGGATTGAGTATATGTTTCCTGATGCTGTTGAGGTTCAAGCTTTAGTTA  667
             | ||||| ||||| || ||||| |||||||||||||| ||||||||||||||||| || |
Sbjct  586   AGTACGGGATTCGAATCGAGTACATGTTTCCTGATGCAGTTGAGGTTCAAGCTTTGGTGA  645

Query  668   GGAACAAGGGTTTGTTCTCTTTCTATGAAGATGGTCACCAGGAGTGTTGCCGTATTAG-A  726
             |||||||||||||||||||||||||||| ||||| || || |||||||||||| | || |
Sbjct  646   GGAACAAGGGTTTGTTCTCTTTCTATGAGGATGGACATCAAGAGTGTTGCCGTGTGAGGA  705

Query  727   AAGGTGAGACCTTTGAGGCGTGCG-TTGAAGGGT-TTACGTGCTTGGATCACTGGTCAGA  784
             ||| | ||||||||| | |||||  || |||||| |||   |||||||| || || ||||
Sbjct  706   AAG-TAAGACCTTTGCGTCGTGCTCTT-AAGGGTCTTAAA-GCTTGGATTACAGGACAGA  762

Query  785   GGAAAGATCAATCACCCGGGACAAGATCGGAGATTCCTG-TTGTTCAGGTTGATCCAGTG  843
             ||||||||||||| || ||||| ||||| |||||||| | |||||||||||||||| |||
Sbjct  763   GGAAAGATCAATCTCCGGGGACGAGATCCGAGATTCC-GATTGTTCAGGTTGATCCTGTG  821

Query  844   TTTGAAGGATTAGATGGTGGAGTTGGTAGT-TTGGTGAAGTGGAATCCGGTTG-CTAATG  901
             |||||||| ||||||||||| ||||| ||| ||| |||||||||||||  ||| ||||||
Sbjct  822   TTTGAAGGGTTAGATGGTGGTGTTGGAAGTCTTG-TGAAGTGGAATCCT-TTGGCTAATG  879

Query  902   TTGAAGGGAA-TGATGTTTGGAA-TTTCTTGAGGACGATGGATGTTCCTGTCAACACGCT  959
             ||||||| || |||||||||||| ||| |||||||| |||||||| || || ||  |  |
Sbjct  880   TTGAAGG-AAGTGATGTTTGGAACTTT-TTGAGGACAATGGATGTCCCGGTGAATGCA-T  936

Query  960   T-CACGCTGC-GGGTTATGTTTCAATCGGATGTGAGCCATGCACGAGAGC-GGTT-TTGC  1015
             | ||||| || ||| ||||| |||||||| ||||||||||| || || || |||  || |
Sbjct  937   TACACGC-GCAGGGGTATGTGTCAATCGGTTGTGAGCCATGTACTAG-GCCGGTGCTT-C  993

Query  1016  CGGGTCAGCATGAGAGAGAAGGGAGATGGTGGTGGGAAGATGCTAAGGCTAAAGAGTGTG  1075
             | |||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||||
Sbjct  994   CAGGTCAGCACGAGAGAGAAGGAAGGTGGTGGTGGGAAGATGCTAAAGCTAAAGAATGTG  1053

Query  1076  GCCTTCACAAAGGGAATATCAAGGAGAATACCAATGGAAACGCAACCGCTAATGTCAACG  1135
             | || ||||||||||| ||||||||| | |  | |||    ||  | |  | | |||| |
Sbjct  1054  GTCTGCACAAAGGGAACATCAAGGAGGA-AG-A-TGGT---GCTGCGG--A-T-TCAAAG  1103

Query  1136  GGACAGCCTCAGTCGCG-GATATCTTC-AATAGCGAGAATGTTGT-GAACTTGAGCAG-G  1191
                | ||  | || ||  || || ||| || ||| | ||||| || | | |||||||| |
Sbjct  1104  C--CTGCGGCTGT-GCAAGAGATATTCGAA-AGCAACAATGTGGTTGCA-TTGAGCAGAG  1158

Query  1192  CAAGGGATTGAGAAT-TTGATGAAGTTAGAGAACCGGAAAGAGGCTTGGATCGTTGTGCT  1250
              | ||| |||||||| || |||||| ||||||| || |||||||| ||| | ||||| ||
Sbjct  1159  GAGGGG-TTGAGAATCTT-ATGAAGCTAGAGAATCGCAAAGAGGCGTGGTTGGTTGTACT  1216

Query  1251  TTATGCACCGTGGTGCCCGTTT-TGTCAGGCAATGGAAGCTTCATTCGAT-GAATTGGCG  1308
             ||| || || |||||||| ||| || ||||| |||||||| |||| | || |||||||| 
Sbjct  1217  TTACGCTCCTTGGTGCCC-TTTCTGCCAGGCGATGGAAGCATCATAC-ATCGAATTGGCT  1274

Query  1309  GATAAGCTGG-GAGGAAGTGGTGTGAAGGTTGCTAAGTTTAGAGCTGATGGTGACCAGAA  1367
             || || || | | ||||  || || || || ||||| ||| | ||||| ||||| |||||
Sbjct  1275  GAGAAACTTGCG-GGAAAAGGAGTTAAAGTGGCTAAATTTCGGGCTGACGGTGAGCAGAA  1333

Query  1368  GGACTTTGCCAAA-AAGGAGTTGCAGCTT-GGAAGCTTTCCAACAATACTTGTGTTCCCA  1425
             ||| ||||| ||  ||| | || ||| || || ||||| || || |||||| | || || 
Sbjct  1334  GGAGTTTGCTAAGCAAGAACTT-CAG-TTAGGGAGCTTCCCGACGATACTTCTCTTTCCG  1391

Query  1426  AAGAA-CTCTTCAAGACCAATCAAGTATCCATCAGAGAAGAGAGATGTTGATTC  1478
             || || | || || || | || ||||| || |||||| | ||||||||||||||
Sbjct  1392  AA-AAGCGCTCCACGAGCTATTAAGTACCCTTCAGAGCATAGAGATGTTGATTC  1444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67000740955


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5