BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22000.1
Length=692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492669 jgi|Araly1|492669|fgenesh2_kg.7__2102__AT4G22000.1 776 0.0
> Ahg492669 jgi|Araly1|492669|fgenesh2_kg.7__2102__AT4G22000.1
Length=621
Score = 776 bits (420), Expect = 0.0
Identities = 569/635 (90%), Gaps = 34/635 (5%)
Strand=Plus/Plus
Query 78 CGCGTTCTCAAAGTTGCTCT--C-A-C---AG--TCTCCGATCTCCAATTTTATAAGTTA 128
|||||||||||||||||||| | | | || ||||||||||||||| |||||||||
Sbjct 1 CGCGTTCTCAAAGTTGCTCTCACAATCAAAAGCTTCTCCGATCTCCAATCATATAAGTTA 60
Query 129 TGGCTGGAAAAGCTGCAGAAGCTGTGGCAAAGACAGTGACAGGGTTTCAACATCCATGGA 188
||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 61 TGGCTGGGAAAGCTGCAGAAGCTGTGGCGAAGACAGTGACGGGGTTTCAATATCCATGGA 120
Query 189 GGGCGAAACTCGATAAGTACAGAACCGAGTTGACGAAAGGTGTGTGGGGTTATTGGGAGA 248
||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 121 GGGCGAAACTCGATAAGTACAGAACCGAGCTGACAAAAGGCGTGTGGGGTTATTGGGAGA 180
Query 249 TGGGAGCATGGAAACCGTTAGGGATAAGTGCACGAAGGAGGGCTATGCTGAGGAAAGAAG 308
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TGGGAGCATGGAAACCGTTAGGGATAAGTGCACGAAGGAGGGCGATGCTGAGGAAAGAAG 240
Query 309 TGTTGACTAATGGAGAAGATTGGCCTTATGATCCAGAGAGGAAAGCTATGAGGACAAAGA 368
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTTGACTAATGGAGAAGACTGGCCTTATGATCCAGAGAGGAAAGCTATGAGGACAAAGA 300
Query 369 GGAAAGGGCATAAATGTGATAGAATTTCAGCTGAGAAAAGAGAGAACACTGCGAAGCTTA 428
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 301 GGAAAGGGCATAAATGCGATAGGATTTCGGCTGAGAAAAGAGAGAACACTGCGAAACTTA 360
Query 429 TGTTGAAGATGCCTCAGATGTTGCTTGATTATaagaagagaaggtgggaaaagaagatga 488
|| ||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||
Sbjct 361 TGCTGAAGATGCCTCAGATGCTGCTTGATTACAAGAAGAGAAGGTGGGAGAAGAAGATGA 420
Query 489 aggaagaagagaaagctaaagaagaCAAGTAATTGATTTGTTGAGATCAT-GATTACTA- 546
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 421 AGGAAGAAGAGAAAGCTAAAGAAGACAAGTAATTGATTTGTTGAGATCATTGATGAATAA 480
Query 547 TAGA-C-TTG-GTT-GATGAATAAGAAT-AATTTAGTTTGTTGATCTTATGAAATCTTGG 601
|| | | || ||| | ||| | | | || | | || ||| || |||||||||||
Sbjct 481 TA-ATCATTTAGTTTGTTGA-TCTCA-TGAA---A-TCTG--GAT-TT-TGAAATCTTGG 529
Query 602 AAGGTTTAAGATCACAAGTTTGCTTCTGATATACTTTTGTATGATGttttttt----ATG 657
| ||||||| | |||||||||||||||||| |||||||||||||||||||| |||
Sbjct 530 --G-TTTAAGAGCTCAAGTTTGCTTCTGATATGCTTTTGTATGATGTTTTTTTGTTTATG 586
Query 658 TTTGTTTTTAACAGAACCCAAAAGTGTTTGTGGTT 692
|||||||||||||||||||||| ||| ||||||||
Sbjct 587 TTTGTTTTTAACAGAACCCAAACGTGGTTGTGGTT 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25427985639
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5