BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22190.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945914 jgi|Araly1|945914|scaffold_702143.1 1698 0.0
> Ahg945914 jgi|Araly1|945914|scaffold_702143.1
Length=1060
Score = 1698 bits (919), Expect = 0.0
Identities = 1021/1068 (96%), Gaps = 15/1068 (1%)
Strand=Plus/Plus
Query 173 tctctctctctctct-GTCGT-CAACAATGGATAGTCCGACGAGCATACGTAGTAAACCA 230
||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCTCTCTACTC-TGCAACAATGGATAGTCCGACGAGCATACGTAGTAAACCA 59
Query 231 CTACCGGAGACTCTTTCTCCATGCGGTAGTCAACGACGGAGAAGCAGCTGCGACTCTAAC 290
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 CCACCGGAGACTCTTTCTCCATGCGGTAGCCAACGACGGAGAAGCAGCTGCGACTCTAAC 119
Query 291 CCACCTGAGTTCGAGTTCTGGCGTTTAACTAACTCTTCATTTCCTCAAGCTGATTCAGAT 350
|||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 120 CCACCTGAGTTCGAGTTCTGGCGTCTCACTAACTCTTCATTTCCTCAAGCTGACTCAGAT 179
Query 351 CTCCTCTCCGCCGACGAGCTTTTTCACGACGGTGTTCTTCTCCCTCTTGACCTCCTCTCC 410
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 CTCCTCTCCGCTGACGAGCTTTTTCACGACGGTGTTCTTCTCCCTCTTCACCTCCTCTCC 239
Query 411 GTTAAATCAGAGCTT-CAGTCCGACCCGAATATCGCAGAATGCGACCCGGATCCATCTCC 469
|| || ||||||||| || || ||||||||||||| ||||||||||||||||||||||||
Sbjct 240 GTGAAGTCAGAGCTTCCA-TCGGACCCGAATATCGTAGAATGCGACCCGGATCCATCTCC 298
Query 470 TTCGACTGG-TAGTTTGATTACAGAGCAAAA-AAGTGATCTTGAACCCGGTTTAGGATCC 527
||| || || || |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 299 TTC-ACCGGTTACTTTGATTACAGAGCAAAAGAA-TGATCTTGAACCCGGTTTAGGATCC 356
Query 528 GAGTTGACCCGAGAAACAACGGTTTCGAAGCGGTGGAGAGATATTTTCAGGAAGAGCGAA 587
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 357 GAGTTGACCCGAGAAACAACGGTTTCGAAGCGGTGGAGAGATATTTTCAGAAAGAGCGAA 416
Query 588 ACCAAACCGCCGGGgaagaaagagaaggtgaaagagaataagaaggagaagaagaaaaCC 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ACCAAACCGCCGGGGAAGAAAGAGAAGGTGAAAGAGAATAAGAAGGAGAAGAAGAAAACC 476
Query 648 GGGTCGGGTCCAAGTTCGGGTTCGGGTTCAGGAGCGGAGCTGAATATCAACATTTGGCCG 707
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 477 GGGTCGGGTCCCGGTTCGGGTTCGGGTTCAGGAGCAGAGCTGAATATCAACATTTGGCCG 536
Query 708 TTTTCAAGAAGTAGATCCGCTGGTAACAACGTGACCCGACCGAGAATGTCGTTTGGAGCT 767
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 537 TTTTCAAGAAGTAGATCCGCAGGGAACAACGTGACCCGACCCAGAATGTCGTTTGGAGCT 596
Query 768 CCGACGACCCGGAAAGTAAGCAGTGCGCCGTGTTCACGTAGCAACTCCACCGGAGAATCC 827
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCGACGACTCGGAAAGTCAGCAGTGCGCCGTGTTCACGTAGCAACTCCACCGGAGAATCC 656
Query 828 AAATCGAGGAAGTGGCCGAGTAGTCCCAGTCGTAACGGCGTGCATCTTGGTCGGAATAGT 887
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 657 AAATCGAGGAAGTGGCCGAGTAGTCCCGGTCGTAACGGCGTGCATCTTGGTCGGAGCAGT 716
Query 888 CCGGTTTGGCAAGTCCGGCGTGGAGGAGGAGCTCCGGTTGGGAAAACGATACCGGAACCG 947
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 717 CCGGTTTGGCAAGTCCGGCGTGGAGGTGGAGCTCCGGTTGGGAAAACGATACCCGAGCCG 776
Query 948 ATGGGTCGGGTTGTGGGTAAAAGGGAGATTCCCGAGACGCGTAAGGGTAAAACAGTAATT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 777 ATGGGTCGGGTTGTGGGTAAAAGGGAGATTCCCGAGACGCGTAAGGGTAAAACGGTAATT 836
Query 1008 GAGAGCAATAAAGCAAAAGTCTTGAACTTGAACGTGCCTATGTGCATCGGTTATCGGAGC 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GAGAGCAATAAAGCAAAAGTCTTGAACTTGAACGTGCCTATGTGCATCGGTTATCGGAGC 896
Query 1068 CGGTTAAGCTGCAGAACCGAAGAGAGTAGTGGTGGTGGTAATAGTAACATTGGGAGTGAC 1127
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 897 CGGTTAAGCTGCAGAACCGAAGAGAGT-G-G-TGGTGGTAATAGTAACATTGGGAGTGAC 953
Query 1128 AACAATAATAATAATAACGCCAACGCTAATAATCCTAATCCTAATGGTTTATTTGGCTTT 1187
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AA---TAATAATAATAACGTCAACGCTAATAATCCTAATCCTAATGGTTTATTTGGCTTT 1010
Query 1188 CGTAATCTCTTCATTAAGAAAGTGTATTGACTTTATTTGTTTTGTTTT 1235
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1011 CGTAATCTCTTCATTAAGAAAGTTTATTGACTTTATTTGTTTTGTTTT 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5