BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22240.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945904 jgi|Araly1|945904|scaffold_702133.1 1450 0.0
Ahg943195 jgi|Araly1|943195|scaffold_603739.1 706 0.0
> Ahg945904 jgi|Araly1|945904|scaffold_702133.1
Length=976
Score = 1450 bits (785), Expect = 0.0
Identities = 904/961 (94%), Gaps = 10/961 (1%)
Strand=Plus/Plus
Query 70 aaaaaaaaaTGGCGACGGTACAATTGTCCACCCAATTTAGCTGCCAAACCAGAGTTTCAA 129
||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||
Sbjct 16 AAAAAAAAATGGCGACGGTACAATTGTTCACCCAATTTCCCTGCCAAACCAGATTTTCAA 75
Query 130 TCTCACCGAACTCTAAATCTATCTCCAAGCCTCCGTTTCTGGTACCGGTGACCTCAATTA 189
|| ||| |||||||||||||||||||||||||||| ||||||||||| | | ||||||||
Sbjct 76 TCACACGGAACTCTAAATCTATCTCCAAGCCTCCGATTCTGGTACCGATAAGCTCAATTA 135
Query 190 TTCACCGCCCGATGATCTCCACCGGAGGAATCGCTGTTTCCCCCCGTAGAGTTTTCAAAG 249
||||||| ||| || |||||||| || |||||| ||||| ||| | || |||| | ||
Sbjct 136 TTCACCGTCCGGTGTTCTCCACCAGAAGAATCGGTGTTT-CCCGTGCGGA-TTTT-AGAG 192
Query 250 TCCGAGCCACAGAT---ACGGGAGAGATAGGATCAGCTCTATTGGCGGCGGAGGAAGCAA 306
|||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |
Sbjct 193 TCCGAGCCACAGATGCGGCGGGGGAGAGAGGATCAGCTCTATTGGCGGCGGAGGAAGCCA 252
Query 307 TTGAAGAC-GTGGAAGAGACGGAGCGGCTAAAGAGATCGCTCGTGGATTCGTTGTACGGA 365
|||||| | ||||| ||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 253 TTGAAG-CTGTGGAGGAGACAGAGCGGCTTAAGAGATCGCTCGCGGATTCGTTGTACGGA 311
Query 366 ACAGATCGAGG-TTTAAGCGCATCGAGCGAAACCAGAGCTGAAATCGGAGATCTAATCAC 424
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 ACAGATCGAGGATTGAA-CGCATCGAGCGAAACCAGAGCTGAAATCGGAGATCTAATCAC 370
Query 425 ACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCGACGGAAGCTCTTTTCCTTCTCAACGG 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCGACGGAAGCTCTTTTCCTTCTCAACGG 430
Query 485 CAAATGGATCCTCGCCTACACATCGTTCGTGAATTTGTTCCCGTTGCTATCACGAGGAAT 544
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 431 CAAATGGATTCTCGCGTACACATCGTTCGTGAATTTGTTCCCGTTGCTTTCACGAGGAAT 490
Query 545 CGTACCGTTAATAAAAGTCGATGAGATCTCTCAAACCATTGATTCAGATAACTTCACCGT 604
||| || ||| ||||||| ||||||||||| || |||||||||||||| |||||||| ||
Sbjct 491 CGTGCCATTAGTAAAAGTAGATGAGATCTCACAGACCATTGATTCAGAAAACTTCACAGT 550
Query 605 CCAGAACTCTGTTCGTTTCGCTGGTCCTTTAGGTACAAACTCGATTAGCACCAACGCTAA 664
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 551 CCAGAACTCCGTTCGTTTCGCTGGTCCTCTAGGTACAAACTCGATTAGCACCAACGCTAA 610
Query 665 ATTCGAAATCCGAAGCCCTAAACGCGTCCAGATTAAGTTTGAGCAAGGCGTAATTGGGAC 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 ATTCGAAATCCGAAGCCCTAAACGCGTCCAGATTAAGTTTGAGCAAGGCGTAATTGGGAC 670
Query 725 GCCTCAGCTAACGGATTCTATTGAGATACCGGAATATGTAGAGGTTCTTGGTCAAAAGAT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GCCTCAGCTAACGGATTCTATTGAGATACCGGAATATGTAGAGGTTCTTGGTCAAAAGAT 730
Query 785 TGATCTTAACCCGATCAGAGGGTTACTTACCTCGGTGCAAGACACAGCCTCGTCTGTGGC 844
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 731 AGATCTTAACCCGATCAGAGGGTTACTTACCTCGGTGCAAGATACAGCCTCGTCTGTGGC 790
Query 845 TAGAACCATATCAAGCCAACCACCGTTGAAATTCTCTTTGCCGGCGGACAATGCGCAGTC 904
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 791 TAGAACCATATCAAGCCAACCACCATTGAAATTCTCTTTGCCGGGGGACAATGCGCAGTC 850
Query 905 TTGGCTACTCACGACTTATCTAGACAAAGACATTCGGATCTCTAGAGGAGACGGTGGAAG 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TTGGCTACTCACGACTTATCTAGACAAAGACATTCGGATCTCTAGAGGAGACGGTGGAAG 910
Query 965 TGTCTTTGTGCTTATCAAAGAAGGAAGCCCTCTCTTGAATCCTTGAACTTGGTCAAAATA 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 TGTCTTTGTGCTTATCAAAGAAGGAAGCCCTCTCTTGAATCCTTGAACTTGGTCAAAATA 970
Query 1025 T 1025
|
Sbjct 971 T 971
> Ahg943195 jgi|Araly1|943195|scaffold_603739.1
Length=1009
Score = 706 bits (382), Expect = 0.0
Identities = 608/717 (85%), Gaps = 16/717 (2%)
Strand=Plus/Plus
Query 300 GAAGCAATTGAAGACGTGGAAGAGACGGAGCGGCTAAAGAGATCGCTCGTGGATTCGTTG 359
|||||||| ||| || ||| ||||||||| |||||||||||||||| | ||||||||||
Sbjct 279 GAAGCAATCGAATCCGCGGAGGAGACGGAGAGGCTAAAGAGATCGCTAGCGGATTCGTTG 338
Query 360 TACGGAACAGATCGAGGTTTAAGCGCATCGAGCGAAACCAGAGCTGAAATCGGAGATCTA 419
||||||||||||||||||||||||||||| ||||| || ||||| || ||| | || ||
Sbjct 339 TACGGAACAGATCGAGGTTTAAGCGCATCTAGCGATACGAGAGCGGAGATCAGTGAGCTT 398
Query 420 ATCACACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCGA-CGGAAGCTCT-TTTCCTTC 477
|||||||||||||||||||||||||||||||||||||| | || ||||||| |||| | |
Sbjct 399 ATCACACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCTAACG-AAGCTCTGTTTC-TCC 456
Query 478 TCAACGGCAAATGGATCCTCGCCTACACATCGTTCGTGAATTTGTTCCCGTTGCTATCAC 537
|||||||||||||||| ||||| ||||| |||||||||| ||||||||| ||||| ||||
Sbjct 457 TCAACGGCAAATGGATTCTCGCGTACACGTCGTTCGTGAGTTTGTTCCCATTGCTCTCAC 516
Query 538 GAGGAATCGTACCGTTAATAAAAGTCGATGAGATCTCTCAAACCATTGATTCAGATAACT 597
|| |||| | |||||| | ||||| ||||||||||| || ||||||||||| |||| ||
Sbjct 517 GAAGAATTGAACCGTTGGTTAAAGTGGATGAGATCTCACAGACCATTGATTCCGATAGCT 576
Query 598 TCACCGTCCAGAACTCTGTTCG-TTTCGCTGGTCC-TTTAGGTACAA-ACTCGATTAGCA 654
||||||| || || |||||||| ||| |||||||| ||| || | | ||| ||||||
Sbjct 577 TCACCGTTCAAAATTCTGTTCGGTTT-GCTGGTCCATTTTCC-ACTACA-TCGTTTAGCA 633
Query 655 CCAACGCTAAATTCGAAATCCGAAGCCCTAAACGCGTCCAGATTAAGTTTGAGCAAGGCG 714
| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 634 CTAACGCTAAGTTCGAAATCCGAAGTCCTAAACGCGTCCAGATTAAGTTCGAGCAAGGCG 693
Query 715 TAATTGGGACGCCTCAGCTAACGGATTCTATTGAGATACCGGAATATGTAGAGGTTCTTG 774
| |||||||| ||||||||||||||||| ||||| || || |||| || ||||||||||
Sbjct 694 TTATTGGGACTCCTCAGCTAACGGATTCGATTGAAATCCCTGAATCCGTGGAGGTTCTTG 753
Query 775 GTCA-AAAGATTGATCTTAACCCGATCAGAGGGTTACTTACCTCGGTGCAAGACACAGCC 833
|||| ||| || ||||| ||||| || | |||||||||||| ||||| |||||||| ||
Sbjct 754 GTCAGAAA-ATCGATCTCAACCCCATTAAAGGGTTACTTACATCGGTCCAAGACACGGCT 812
Query 834 TCGTCTGTGGCTAGAACCATATCAAGCCAACCACCGTTGAAA-TTCTCTTTGCCG-GCGG 891
|| || |||||||||||||| |||| ||||||||| || ||| || ||| |||| | |
Sbjct 813 TCTTCAGTGGCTAGAACCATTTCAAACCAACCACCATT-AAAGTTTTCTCTGCCTAGTG- 870
Query 892 ACAATGCGCAGTCTTGGCTACTCACGACTTATCTAGACAAAGACATTCGGATCTCTAGAG 951
| || | ||||| ||||| |||||||||||||| ||||||||| || ||||||||||||
Sbjct 871 ATAACACACAGTCGTGGCTGCTCACGACTTATCTCGACAAAGACCTTAGGATCTCTAGAG 930
Query 952 GAGACGGTGGAAGTGTCTTTGTGCTTATCAAAGAAGGAAGCCCTCTCTTGAATCCTT 1008
| || || ||||| |||||||| || ||||||||||||||| ||||||| || ||||
Sbjct 931 GCGATGGCGGAAGCGTCTTTGTTCTCATCAAAGAAGGAAGCTCTCTCTTAAACCCTT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5