BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22330.1 Length=1347 Score E Sequences producing significant alignments: (Bits) Value Ahg492634 jgi|Araly1|492634|fgenesh2_kg.7__2067__AT4G22330.1 1864 0.0 > Ahg492634 jgi|Araly1|492634|fgenesh2_kg.7__2067__AT4G22330.1 Length=1258 Score = 1864 bits (1009), Expect = 0.0 Identities = 1198/1283 (93%), Gaps = 38/1283 (3%) Strand=Plus/Plus Query 2 AAAAGGACC-A-agagagaga-agaagacgaaacgatcgtcagagatagagagagagaaA 58 |||||| || | ||||||||| ||||||||||||||||||| ||||||||||| Sbjct 1 AAAAGGCCCAAGAGAGAGAGAGAGAAGACGAAACGATCGTC--------AGAGAGAGAAA 52 Query 59 GGTCATCACCCATTCTCACTCGCAGAATATTTGTTCTCATCTGATTCCTCCGATCTGCCA 118 |||| ||| ||||| | |||||||||| |||||||||||||||||||||||||||||||| Sbjct 53 GGTC-TCATCCATTATTACTCGCAGAAGATTTGTTCTCATCTGATTCCTCCGATCTGCCA 111 Query 119 TGTCTCGGCTTTTCTAACGCTAAGAAGTTTCACAGACGCGGCGAAGGAGAGGGAGGAAGG 178 || ||| |||| ||||| |||||||| |||||| |||||| ||| | |||||||| | | Sbjct 112 TGGCTCTGCTTCGCTAACACTAAGAAGATTCACACACGCGGTGAA-G-GAGGGAGG-A-G 167 Query 179 AGATAGATCTCTTTTTCCGTCGCGATAATAATAAAAAATAAACGTGTCTAGAGGCTGTT- 237 ||| |||||||||||||||||||| || || |||||||||||||||||||||||| || Sbjct 168 -GATCGATCTCTTTTTCCGTCGCGAGAAAAAAAAAAAATAAACGTGTCTAGAGGCT-TTC 225 Query 238 ACTGAA-GAGTTGATTCATACGGAGAGAGGATAGAAATGGCAGATGGGATATCGAGCTTT 296 ||| || |||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 226 ACT-AAGGAGTTGATTCATACTGAGAGAAGATAGAAATGGCAGATGGGATATCGAGCTTT 284 Query 297 TGGGGTCCTGTGACTTCTACTATAGAGTGTTGTGAGATGAACTACGCCTACTCATCCTAC 356 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 285 TGGGGTCCTGTGACTTCTACTATAGAGTGTTGTGAGATAAACTACGCCTACTCATCCTAC 344 Query 357 ATTGCTGAGTTCTACAACACTATATCCAATGTCCCTGGAATCCTATTGGCTCTCATTGGT 416 ||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 345 ATTGCAGAGTTTTATAACACTATCTCCAATGTCCCTGGAATCCTATTGGCTCTCATTGGT 404 Query 417 CTTGTCAATGCATTAAGGCAACGGTTTGAGAAGAGGTTTAGCATTCTTCACATTTCGAAT 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 405 CTTGTCAATGCATTAAGGCAACGGTTTGAGAAGAGGTTTAGCATTCTTCACATATCGAAT 464 Query 477 ATGATACTTGCTATCGGCAGCATGCTCTACCATGCCACTTTGCAACACGTGCAACAACAG 536 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 465 ATGATTCTTGCTATCGGCAGCATGCTCTACCATGCCACTTTGCAACACGTGCAACAACAG 524 Query 537 AGTGATGAGACCCCAATGGTGTGGGAGATACTTCTATACATGTACATCCTTTACTCACCA 596 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 525 AGTGATGAGACCCCAATGGTGTGGGAGATACTTCTTTACATGTACATCCTTTACTCACCA 584 Query 597 GATTGGCATTACCGAAGTACAATGCCCACTTTTCTCTTCCTCTACGGTGCTGCCTTTGCC 656 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 585 GATTGGCATTACCGAAGTACAATGCCCACTTTTCTCTTCCTCTATGGTGCTGCCTTTGCC 644 Query 657 ATAGTCCATGCTTACCTCAGGTTTGGAATTGGTTTCAAGGTCCACTACGTGATACTTTGC 716 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 645 ATAGTCCATGCTTACCTCAGGTTTGGCATTGGTTTCAAGGTCCACTACGTGATCCTTTGC 704 Query 717 CTTCTATGCATCCCTCGGATGTACAAGTACTACATTCACACAGAGGACACAGCAGCCAAA 776 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 705 CTTCTATGCATCCCTCGGATGTACAAGTACTACATTCACACAGAGGACACCGCAGCCAAA 764 Query 777 AGGATTGCGAAATGGTATGTTGCTACGATCTTAGTGGGAAGCATATGCTGGTTCTGTGAC 836 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 765 AGGATTGCAAAATGGTATGTTGCTACAATCTTAGTGGGAAGCATATGCTGGTTCTGTGAC 824 Query 837 CGTGTCTTCTGCAAGACGATATCTCAGTGGCCTGTGAATCCTCAGGGACATGCTCTGTGG 896 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 825 CGTGTCTTCTGCAAGACGATATCTCAGTGGCCTGTGAATCCTCAGGGCCATGCTCTGTGG 884 Query 897 CATGTGTTCATGAGTTTCAACTCTTACTGCGCAAACACATTCTTGATGTTCTGCAGAGCT 956 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 885 CATGTGTTCATGAGTTTCAACTCTTACTGTGCAAACACATTCTTGATGTTCTGCCGAGCT 944 Query 957 CAGCAACGTGGATGGAACCCAAAGGTAAAATACTTTCTGGGAGTTCTCCCTTATGTCAAG 1016 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 945 CAGCAACGTGGATGGAACCCAAAGGTAAAATACTTTCTGGGAGTTCTTCCTTATGTCAAG 1004 Query 1017 ATCGAGAAGCCAAAAACACAATGAGAAGAAAATTGGGGATAAAAAAGCCCAGATGAA-GA 1075 |||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||| || Sbjct 1005 ATCGAGAAGCCAAAAACACAGTGAGAAGAAAAT-GGGGATAAAAA-GCCCAGAAGAAAGA 1062 Query 1076 AGAAGAAGATCATAAATATAGTTTTTGTTCATCGTTTTGTCAGAATCTCGACATGGtttt 1135 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1063 AGAAGAAGATCATAAATATAGTTTTTGTTCAACGTTTTGTCAGAATCTCGACATGGGTTT 1122 Query 1136 tttcttaattttattttttGAAAGTGAAACTCTCTAGATACAGTCTAGAttttttttttt 1195 ||| | |||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1123 TTT---A-TTTTATTTTTTGGAAGTGAAACTCTCTAGATACAGTCTAGATCTTTTTTTTT 1178 Query 1196 ttttCTCATCTCTGTATTAGCTATTGGGAAT-GCTCTTAAGAAGAATTGA--TT--TTT- 1249 ||| | |||||||||||| |||||||| | |||||||||||||||||| || ||| Sbjct 1179 CTTT-T--TCTCTGTATTAGTTATTGGGATTTGCTCTTAAGAAGAATTGAGATTGATTTT 1235 Query 1250 -AACTTGCTAAAAAAGCTCTTGT 1271 ||||||||||| |||||||||| Sbjct 1236 TAACTTGCTAAAGAAGCTCTTGT 1258 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50398496274 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5