BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22780.1 Length=1963 Score E Sequences producing significant alignments: (Bits) Value Ahg492590 jgi|Araly1|492590|fgenesh2_kg.7__2023__AT4G22780.1 2723 0.0 > Ahg492590 jgi|Araly1|492590|fgenesh2_kg.7__2023__AT4G22780.1 Length=1878 Score = 2723 bits (1474), Expect = 0.0 Identities = 1783/1923 (93%), Gaps = 57/1923 (3%) Strand=Plus/Plus Query 49 AGAAGCACATGAATTGTTCTGGTTTTATGATAGCTTTCTCTTaagaagaagaagaagaaa 108 |||||||||||||||||||||||||||||| | | || | ||||||||| ||| || Sbjct 1 AGAAGCACATGAATTGTTCTGGTTTTATGA-A-C---ATC-T--GAAGAAGAAAAAG-AA 51 Query 109 gaTAAATTAAAAGGGTGGTTCTGAGTTTTAAGGATTATTGTTTgaaacaagaagcaagaa 168 | || ||| | | |||||||||||||||| ||||||||||||| | ||| ||| Sbjct 52 G---AA--GAAA-GAT--TTCTGAGTTTTAAGGAATATTGTTTGAAAC-A-AAG-AAG-- 98 Query 169 gaagaagaattgaagaataaaaaagaTGGAGTTATCTGATTGCTCTAATGAATATGAGAA 228 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 99 CAAGAAGAA--GAAGAATAAAAAAGATGGAGTTATCTGATTGCTCTAATGAATATGAGAA 156 Query 229 GCTCGTTGTTCGGATGAACATGCCCAGGGTCGTAATTGACAATGGAGTTTGCCCTAATTC 288 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 157 GCTTGTTGTACGGATGAACATGCCCAGGGTCGTAATTGACAATGGAGTTTGCCCTAATAC 216 Query 289 AACTGTCGTCAAGATTGATAGTGCAAGAAGCCCAGGAATATTGCTTGAATCTGTACAACT 348 ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 217 AACTGTCGTCAAGATTGATAGCGCAAGAAGCCCAGGGATATTACTTGAATCTGTACAACT 276 Query 349 TCTCACTGATATGAATCTCTGGATCAAAAAAGCTTACATTTCCTCTGATGGAAAATGGAA 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 TCTCACTGATATGAATCTCTGGATCAAAAAAGCTTACATTTCCTCTGATGGAAAATGGAA 336 Query 409 TATGGATGTTTTTCATGTGAGCGATCTTAACGGAGACAAATTAACCGACGAGAACCTAAT 468 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 337 CATGGATGTTTTTCATGTGAGCGATCTTAACGGAAACAAATTAACCGACGAGAACCTAAT 396 Query 469 CCGTTACATTGAAAAGTCTATTGAAACGTCTCATTACTGT-AAAACGGAAGGGTATACGG 527 |||||||||||||||||| ||||| ||||||||||||||| ||||| ||||| || || | Sbjct 397 CCGTTACATTGAAAAGTCGATTGAGACGTCTCATTACTGTAAAAAC-GAAGGCTACACCG 455 Query 528 GTTTAACCGCTCTAGAGTTAACCGGAACAGACAGAGTCGGTTTACTCTCAGAGGTTTTCG 587 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 456 GTTTAACCGCTTTAGAGTTAACCGGAACAGACAGAGTCGGTTTACTCTCAGAGGTTTTCG 515 Query 588 CGGTTCTAGCTGATCTTGAATGTGATGTTGTTGAGGCTAAGGCATGGACGCATAACGGCA 647 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 516 CGGTTTTAGCCGATCTTGAATGTGATGTTGTTGAGGCTAAGGCATGGACGCATAACGGTA 575 Query 648 GGATTGCGTCGATGATTTATGTTAAAGACGGTAACTCCGGGACACCGATCGACGGAGATT 707 | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 576 GAATTGCGTCTATGATTTATGTTAAAGACGGTAACTCCGGGACTCCGATCGACGGAGATT 635 Query 708 CCGACCGTGTCCAACGTGTAGAAGGACAACTACGAAATCTAC-TAAAGGCCGACGATGGT 766 | ||||| || ||||| |||||||| |||||||| ||||||| || | ||||| |||||| Sbjct 636 CTGACCGGGTTCAACGGGTAGAAGGGCAACTACGTAATCTACTTACA-GCCGATGATGGT 694 Query 767 TACCAAAACGACACGAGGACATGTGTGTCTTATGGTGGCAATACACATATGGAGAGAAGG 826 |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct 695 TACCAAAACGACACGAGGACATGTGTTTCCTATGGTGGCAATACTCATATGGAGAGAAGG 754 Query 827 TTGCACCAAAGGATGTTTATGGACCGTGACTATGAGAAGAAGTTTGATATCGAGAAATCT 886 || || || ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 755 TTACATCAGAGGATGTTTATGGACCGTGACTATGAGAAGAAGTTTGATATCGAGAATTCT 814 Query 887 CCTATCGTTTCGGTACAAAATCTTCCGAAACGTGGTTACTCTGTTGTGAACTTGCAGTGT 946 || || |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 815 CCGATTGTTTCGGTACAAAATCTTCCGAAACGTGGTTACTCTGTTGTGAATTTGCAGTGC 874 Query 947 AAAGATCGAATGAAGCTTTTGTTTGACGTTGTTTGCACGTTGACGGATATGGCTTACATT 1006 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 875 AAAGATCGATTGAAGCTTTTGTTTGACGTTGTTTGCACATTGACGGATATGGCTTACATT 934 Query 1007 GTGTTCCACGCCGCGATTCGAACGGTTGGAGAAACGGCGTTTTTGGAATTCTATGTTAGA 1066 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 935 GTGTTCCACGCCGCGATTCGAACGGTTGGAGAAACCGCGTTTTTGGAATTCTATGTTAGA 994 Query 1067 CATAGTGATGGACATCCGGTTAGTTCAGAACCGGAGAGACAACGTTTGATCCAATGTTTA 1126 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 995 CATAGTGATGGACATCCGGTTAGTTCGGAACCGGAGAGACAACGTTTGATCCAGTGTTTA 1054 Query 1127 CAAGCTGCAATTGAAAGAAGAACGGTTAAGGGTGTGAGATTGGAGTTATGCACAGCGGAT 1186 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1055 CAAGCCGCAATTGAAAGAAGAACGGTTAAGGGTGTGAGATTGGAGTTATGCACGGCGGAT 1114 Query 1187 AGACCGGGATTGTTAGCGGAAGTAACACGAATATTGAGGGAGAACGGTTTAAACATTGCT 1246 |||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| Sbjct 1115 AGACCGGGATTGTTAGCGGAAGTAACACGAGTGTTGAGGGAGAACGGATTAAACATTGCT 1174 Query 1247 AGAGCCGAGATATCGACTAAAGATAGTATAGCGAGGAATGTGTTCTATGTGACGGATGCA 1306 |||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| Sbjct 1175 AGAGCCGAGATATCGACTAAAGATGGTGTAGCGAGGAATGTGTTCTATGTGACTGATGCA 1234 Query 1307 AATGGTAACCTT-ATAGATCCCGAGATAATCAAATCGATTAGGGAGAAGATCGGTATCGA 1365 |||||||| ||| |||||||| ||||||||| ||||||||||||||||||| |||||||| Sbjct 1235 AATGGTAA-CTTAATAGATCCTGAGATAATCCAATCGATTAGGGAGAAGATTGGTATCGA 1293 Query 1366 TGATCTCAGTGTTAAAGAACCGTTCCCGATTAGTTGCCGAGAAGCGGTTGAGAAGGAACA 1425 |||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1294 TGATCTAAGTGTTAAAGAACTGTTCCCGACTAGTTGCCGAGAAGCGGTTGAGAAGGAACA 1353 Query 1426 ACAT-ATAGAACCGCAAGATCACCAAGGACGGTATGGAGGAGGGACAGTGTTGGTGTCAC 1484 |||| | |||||||||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct 1354 ACATCA-AGAACCGCAAGATCACCAAGGACGCTATGGAGGAGGGACAGTATTGGTATCAC 1412 Query 1485 TTGGGAGTCTAGTGATGAGGAATCTATACCATTTGGGTTTGATCAAATCATATTTTTAAC 1544 ||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| Sbjct 1413 TTGGGAGTCTAGTGATGAGAAATCTATATCAATTGGGTTTGATCAAATCATATTTTTAAC 1472 Query 1545 CGGGGT-AACTAACCGGTCCATGTAGACCAATTCAATCGTGTTTGTCAACAACCCACGCG 1603 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1473 C-GGGTAAACTAACCGGTCCATGTAGACCAATTCAATCGTGTTTGTCAACAACCCACGCG 1531 Query 1604 GTTGAATTGGTGTATCTGGAGCAGATAGTGAACCGGTTATGGATTTGGTTTGTGGGCAAA 1663 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| Sbjct 1532 GTTGAATTGGTGTATCTGGAGCAGATAGTGAACCGGTAATGGATTTGGTTTGGGGGAAAA 1591 Query 1664 TTTAATTTTATGTATATAAAATGTGGGAAGTTAGTTAAGAATTTGGTGGTCGGTCTTTCA 1723 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 1592 TTTAATTA-ATGTATATAAAATGTGGAAAGTTAGTTAAGAATTTGGTGGTCGGTCTT-CA 1649 Query 1724 TGTTGGACCAATAGGTAGTAGAAGGATGTTAGGTAGAATCTTGGTAACATTTAttttttt 1783 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1650 TGTTGGACCAATAGGTAGTAGAAGGATGTTAGGTAAAATCTTGGTAACATTTATTTTTTT 1709 Query 1784 CT---CTGTACATATTTATGATATAACCTATCGTTGTTAGAAGATTAGTTTTGTCAATAG 1840 | |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 1710 ATTATCTGTACATATTTATGATATAACCTATGGTTGTTAGAAGATTAGTTTTGTTAATAG 1769 Query 1841 TA--AA-TCAGTGTGTTGTATGTAAAATTAAATTAAATTATGGGGTTAGTGTAACGCAAA 1897 || || |||||||||| ||||||| ||| | ||||| ||||| ||||||| Sbjct 1770 TAGTAAATCAGTGTGTT--ATGTAAA-TTA--T--------GGGGTCAGTGTTACGCAAA 1816 Query 1898 GGAGACAAGTGGGTCCTACATGTGTGAATCTTATTGATTCGttttt-ttATTATATAATC 1956 ||||||||| ||||||||| |||||||||||||||||||||||||| || |||||||||| Sbjct 1817 GGAGACAAGCGGGTCCTACTTGTGTGAATCTTATTGATTCGTTTTTGTT-TTATATAATC 1875 Query 1957 TTT 1959 ||| Sbjct 1876 TTT 1878 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73780804565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5