BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G22920.1

Length=1581
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492573 jgi|Araly1|492573|fgenesh2_kg.7__2006__AT4G22920.1        2054    0.0  


> Ahg492573 jgi|Araly1|492573|fgenesh2_kg.7__2006__AT4G22920.1
Length=1530

 Score = 2054 bits (1112),  Expect = 0.0
 Identities = 1383/1503 (92%), Gaps = 62/1503 (4%)
 Strand=Plus/Plus

Query  1     GCCGAATCTGTGTC-TCTTTGTCGCAACGAGATGGCTAAAGTTATCCAAAAAGACGGTTA  59
             |||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||
Sbjct  1     GCCGAATCTGTGTCAT-TTTGTCGCAACGAGATGGCT-AAGTTATCC-AAAAGACGGTTA  57

Query  60    GAGCCAGTTGTTAGCCCCACCATGACGACACATGGGGAAGCTCATGCAAAGATT-AG-AG  117
             ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct  58    GAGCCGGTTGTTAGCCCCACCATGACGACACATGGGGAAGCTCATGCAAAGATTAAGAAG  117

Query  118   AACACGTGGCACTCTCTCGTGTTCAGAAAAATTCCAAAAGAGTGTTCAGATTTGGGCACG  177
             |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| 
Sbjct  118   AACACGTGGCACTCTCTCGTGTTCAGAAAATTTCCAAAAGAGCGTTCAGATTTGGGCACA  177

Query  178   GAAGTGTGAAACGTGAAGCAAC-AATCCCTTTTAAACACAAGAACCAA-CTCAATACGCA  235
             |||||||||||||||||||||| |||| |||||||||||||||||||| ||  |||||||
Sbjct  178   GAAGTGTGAAACGTGAAGCAACGAATCACTTTTAAACACAAGAACCAACCT-TATACGCA  236

Query  236   TCAC-AAAGAACCCTAAATTCCTGGAAGATCtcaaaaggaaaattcaaaaccaaagcttc  294
             |||| ||||||||||||||||| ||||||| |      |   |   ||||||||| ||||
Sbjct  237   TCACAAAAGAACCCTAAATTCCAGGAAGAT-T------G---A---AAAACCAAATCTTC  283

Query  295   aagcaatcatcaagcaaaggaaaagctcaaaTTTTGGGTCTTTTATATATTTATTTCTTA  354
             |||    ||  ||| |||  |||| |||||| ||||||||  || | |||||  ||   |
Sbjct  284   AAG----CA--AAGGAAA--AAAAACTCAAAATTTGGGTC--TT-T-TATTT-CTT-AAA  329

Query  355   AAGTTACAATCTTTTTGATTGTGGTTTCAGTGTACGAACACGCAAGAACTCGCGTGAAAA  414
             ||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  330   AAGTTACAAGC-TTTTGATTGTGGTTTCAGTGTACGAACACGCAAGAAATCGCGTGAAAA  388

Query  415   AATTGTATCCAAGCTTCGTGA-AAGGAGTCTCTCTGTATTTAGTGGCGTTTTG-TTCTGT  472
             |||||||||||||||||| || || || |||||||||||||||||| | |||| ||||||
Sbjct  389   AATTGTATCCAAGCTTCG-GAGAA-GA-TCTCTCTGTATTTAGTGGTGCTTTGTTTCTGT  445

Query  473   TGTTATTTCTGAAATATTGAAGCTTTTGATTTGGGTTTCAAGAGAGC--AGAGATGTGTA  530
             | | |||||||||| ||||||||||||||||| ||||||||||||||  |||||||||||
Sbjct  446   TCTAATTTCTGAAAAATTGAAGCTTTTGATTT-GGTTTCAAGAGAGCAGAGAGATGTGTA  504

Query  531   GTTTGTCGGCGATTATGTTGTTACCAACGAAGCTGAAACCAGCTTATTCAGACAAACGGA  590
             |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  505   GTTTGTCGGCGAATCTGTTGTTACCAACGAAGCTGAAACCAGCTTATTCAGACAAACGGA  564

Query  591   GTAACAGTAGCAGCAGCAGCTCACTCTTCTTCAACAATAGAAGATCCAAGAAGAAGAACC  650
             ||||||||   |||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct  565   GTAACAGT---AGCAGCAGCTCACTCTTCTTCACCAACAGAAGATCCAAGAAGAAGAATC  621

Query  651   AATCGATTGTTCCCGTTGCAAGGTTGTTTGGACCGGCGATTTTCGAATCATCCAAATTGA  710
             |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  622   AATCGATTGTTCCCGTTGCAAGATTGTTTGGACCCGCGATTTTCGAATCATCCAAATTGA  681

Query  711   AAGTACTCTTCTTAGGGGTTGATGAGAAGAAGCATCCTTCAACGCTCCCTAGGACTTACA  770
             ||||| | || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  682   AAGTATTGTTTTTAGGGGTTGATGAGAAGAAGCATCCTTCAACGCTCCCTAGAACTTACA  741

Query  771   CACTCACTCACAGTGACATTACAGCTAAACTAACCTTAGCTATTTCTCAATCCATAAACA  830
             | ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||
Sbjct  742   CTCTCACTCACAGTGACATTACAGCTAAATTAACTTTAGCTATTTCTCACTCCATAAACA  801

Query  831   ACTCTCAGTTGCAAGGATGGGCAAATAGGCTATACCGGGATGAAGTTGTGGCAGAATGGA  890
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  802   ATTCTCAGTTGCAAGGATGGGCAAATAGGCTATACCGGGATGAAGTTGTGGCAGAATGGA  861

Query  891   AGAAAGTGAAAGGGAAAATGTCGCTTCACGTTCATTGTCACATAAGCGGTGGCCATTTCC  950
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  862   AGAAAGTGAAAGGGAAAATGTCGCTTCACGTTCATTGTCACATAAGCGGTGGCCATTTCC  921

Query  951   TTTTAGATCTCTTTGCAAAGTTTCGATATTTCATCTTTTGCAAAGAACTACCTGTGGTGT  1010
             |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  922   TTTTAGATCTCTTTGCAAAGTTTCGATACTTCATCTTTTGCAAAGAACTACCAGTGGTGT  981

Query  1011  TGAAGGCTTTTGTGCATGGAGATGGGAACTTGTTGAACAACTATCCTGAGCTACAAGAAG  1070
             |||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct  982   TGAAGGCTTTTGTGCATGGAGATGGGAACTTGTTGAACAATTACCCTGAGTTACAAGAAG  1041

Query  1071  CTCTTGTTTGGGTCTATTTCCATTCTAATGTCAATGAGTTCAACAAAGTCGAGTGTTGGG  1130
             ||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct  1042  CTCTTGTTTGGGTTTACTTCCATTCTAATGTCAACGAGTTCAACAAAGTCGAATGTTGGG  1101

Query  1131  GTCCGCTTTGGGAAGCTGTTTCGCCTGATGGTCACAAGACTGAGACTCTTCCCGAGGCTC  1190
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct  1102  GTCCGCTTTGGGAAGCTGTTTCGCCTGATGGTCACAAGACTGGGACTCTTCCCGATGCTC  1161

Query  1191  GGTGTGCGGACGAGTGTAGTTGTTGTTTTCCAACCGTTAGCTCGATTCCATGGTCTCATA  1250
             |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1162  GGTGCGCGGAAGAGTGTAGTTGTTGTTTTCCAACCGTTAGCTCGATTCCATGGTCTCATA  1221

Query  1251  GTCTTAGTAATGAAGGTGTAAATGGTTACTCTGGGACTCAGACTGAGGGAATTGCTACTC  1310
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1222  GTCTTAGTAATGAAGGTGTAAATGGTTACTCTGGGACTCAGACTGAAGGAATTGCTACTC  1281

Query  1311  CAAATCCGGAGAAACTCTAGTGACTAAATATCAAATTACAAGTTTTTCTTTTGGT-----  1365
             | ||||||||||||||||||||| |||| |||||| |||||||||||||||||||     
Sbjct  1282  CTAATCCGGAGAAACTCTAGTGATTAAACATCAAACTACAAGTTTTTCTTTTGGTTTCTG  1341

Query  1366  --AGTTTGTACAAA-GTGAAAAGGAAATGGCAGGACTTTCCTTTTGGTGGATCTAAATAT  1422
               |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  1342  GTAGTTTGTATAAAAGTGAAAAGGAAATGGCAGGTCTTTCCTTTTGGTGGATCTAAATAT  1401

Query  1423  TGGTTTGGTTTGGTGTACATAATGTGGTATAGGAAAATAATGATTATTTGTAGGTTAAAT  1482
             |||||||||  | |  ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1402  TGGTTTGGT--G-T--ACATAATGTGGTATAGGAAAATAATGATTATCTGTAGGTTAAAT  1456

Query  1483  ACA  1485
             |||
Sbjct  1457  ACA  1459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59230330975


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5