BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22920.1 Length=1581 Score E Sequences producing significant alignments: (Bits) Value Ahg492573 jgi|Araly1|492573|fgenesh2_kg.7__2006__AT4G22920.1 2054 0.0 > Ahg492573 jgi|Araly1|492573|fgenesh2_kg.7__2006__AT4G22920.1 Length=1530 Score = 2054 bits (1112), Expect = 0.0 Identities = 1383/1503 (92%), Gaps = 62/1503 (4%) Strand=Plus/Plus Query 1 GCCGAATCTGTGTC-TCTTTGTCGCAACGAGATGGCTAAAGTTATCCAAAAAGACGGTTA 59 |||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||||| Sbjct 1 GCCGAATCTGTGTCAT-TTTGTCGCAACGAGATGGCT-AAGTTATCC-AAAAGACGGTTA 57 Query 60 GAGCCAGTTGTTAGCCCCACCATGACGACACATGGGGAAGCTCATGCAAAGATT-AG-AG 117 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 58 GAGCCGGTTGTTAGCCCCACCATGACGACACATGGGGAAGCTCATGCAAAGATTAAGAAG 117 Query 118 AACACGTGGCACTCTCTCGTGTTCAGAAAAATTCCAAAAGAGTGTTCAGATTTGGGCACG 177 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 118 AACACGTGGCACTCTCTCGTGTTCAGAAAATTTCCAAAAGAGCGTTCAGATTTGGGCACA 177 Query 178 GAAGTGTGAAACGTGAAGCAAC-AATCCCTTTTAAACACAAGAACCAA-CTCAATACGCA 235 |||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||| Sbjct 178 GAAGTGTGAAACGTGAAGCAACGAATCACTTTTAAACACAAGAACCAACCT-TATACGCA 236 Query 236 TCAC-AAAGAACCCTAAATTCCTGGAAGATCtcaaaaggaaaattcaaaaccaaagcttc 294 |||| ||||||||||||||||| ||||||| | | | ||||||||| |||| Sbjct 237 TCACAAAAGAACCCTAAATTCCAGGAAGAT-T------G---A---AAAACCAAATCTTC 283 Query 295 aagcaatcatcaagcaaaggaaaagctcaaaTTTTGGGTCTTTTATATATTTATTTCTTA 354 ||| || ||| ||| |||| |||||| |||||||| || | ||||| || | Sbjct 284 AAG----CA--AAGGAAA--AAAAACTCAAAATTTGGGTC--TT-T-TATTT-CTT-AAA 329 Query 355 AAGTTACAATCTTTTTGATTGTGGTTTCAGTGTACGAACACGCAAGAACTCGCGTGAAAA 414 ||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 330 AAGTTACAAGC-TTTTGATTGTGGTTTCAGTGTACGAACACGCAAGAAATCGCGTGAAAA 388 Query 415 AATTGTATCCAAGCTTCGTGA-AAGGAGTCTCTCTGTATTTAGTGGCGTTTTG-TTCTGT 472 |||||||||||||||||| || || || |||||||||||||||||| | |||| |||||| Sbjct 389 AATTGTATCCAAGCTTCG-GAGAA-GA-TCTCTCTGTATTTAGTGGTGCTTTGTTTCTGT 445 Query 473 TGTTATTTCTGAAATATTGAAGCTTTTGATTTGGGTTTCAAGAGAGC--AGAGATGTGTA 530 | | |||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 446 TCTAATTTCTGAAAAATTGAAGCTTTTGATTT-GGTTTCAAGAGAGCAGAGAGATGTGTA 504 Query 531 GTTTGTCGGCGATTATGTTGTTACCAACGAAGCTGAAACCAGCTTATTCAGACAAACGGA 590 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 505 GTTTGTCGGCGAATCTGTTGTTACCAACGAAGCTGAAACCAGCTTATTCAGACAAACGGA 564 Query 591 GTAACAGTAGCAGCAGCAGCTCACTCTTCTTCAACAATAGAAGATCCAAGAAGAAGAACC 650 |||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| | Sbjct 565 GTAACAGT---AGCAGCAGCTCACTCTTCTTCACCAACAGAAGATCCAAGAAGAAGAATC 621 Query 651 AATCGATTGTTCCCGTTGCAAGGTTGTTTGGACCGGCGATTTTCGAATCATCCAAATTGA 710 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 622 AATCGATTGTTCCCGTTGCAAGATTGTTTGGACCCGCGATTTTCGAATCATCCAAATTGA 681 Query 711 AAGTACTCTTCTTAGGGGTTGATGAGAAGAAGCATCCTTCAACGCTCCCTAGGACTTACA 770 ||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 682 AAGTATTGTTTTTAGGGGTTGATGAGAAGAAGCATCCTTCAACGCTCCCTAGAACTTACA 741 Query 771 CACTCACTCACAGTGACATTACAGCTAAACTAACCTTAGCTATTTCTCAATCCATAAACA 830 | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| Sbjct 742 CTCTCACTCACAGTGACATTACAGCTAAATTAACTTTAGCTATTTCTCACTCCATAAACA 801 Query 831 ACTCTCAGTTGCAAGGATGGGCAAATAGGCTATACCGGGATGAAGTTGTGGCAGAATGGA 890 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 802 ATTCTCAGTTGCAAGGATGGGCAAATAGGCTATACCGGGATGAAGTTGTGGCAGAATGGA 861 Query 891 AGAAAGTGAAAGGGAAAATGTCGCTTCACGTTCATTGTCACATAAGCGGTGGCCATTTCC 950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 862 AGAAAGTGAAAGGGAAAATGTCGCTTCACGTTCATTGTCACATAAGCGGTGGCCATTTCC 921 Query 951 TTTTAGATCTCTTTGCAAAGTTTCGATATTTCATCTTTTGCAAAGAACTACCTGTGGTGT 1010 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 922 TTTTAGATCTCTTTGCAAAGTTTCGATACTTCATCTTTTGCAAAGAACTACCAGTGGTGT 981 Query 1011 TGAAGGCTTTTGTGCATGGAGATGGGAACTTGTTGAACAACTATCCTGAGCTACAAGAAG 1070 |||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| Sbjct 982 TGAAGGCTTTTGTGCATGGAGATGGGAACTTGTTGAACAATTACCCTGAGTTACAAGAAG 1041 Query 1071 CTCTTGTTTGGGTCTATTTCCATTCTAATGTCAATGAGTTCAACAAAGTCGAGTGTTGGG 1130 ||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1042 CTCTTGTTTGGGTTTACTTCCATTCTAATGTCAACGAGTTCAACAAAGTCGAATGTTGGG 1101 Query 1131 GTCCGCTTTGGGAAGCTGTTTCGCCTGATGGTCACAAGACTGAGACTCTTCCCGAGGCTC 1190 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1102 GTCCGCTTTGGGAAGCTGTTTCGCCTGATGGTCACAAGACTGGGACTCTTCCCGATGCTC 1161 Query 1191 GGTGTGCGGACGAGTGTAGTTGTTGTTTTCCAACCGTTAGCTCGATTCCATGGTCTCATA 1250 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1162 GGTGCGCGGAAGAGTGTAGTTGTTGTTTTCCAACCGTTAGCTCGATTCCATGGTCTCATA 1221 Query 1251 GTCTTAGTAATGAAGGTGTAAATGGTTACTCTGGGACTCAGACTGAGGGAATTGCTACTC 1310 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1222 GTCTTAGTAATGAAGGTGTAAATGGTTACTCTGGGACTCAGACTGAAGGAATTGCTACTC 1281 Query 1311 CAAATCCGGAGAAACTCTAGTGACTAAATATCAAATTACAAGTTTTTCTTTTGGT----- 1365 | ||||||||||||||||||||| |||| |||||| ||||||||||||||||||| Sbjct 1282 CTAATCCGGAGAAACTCTAGTGATTAAACATCAAACTACAAGTTTTTCTTTTGGTTTCTG 1341 Query 1366 --AGTTTGTACAAA-GTGAAAAGGAAATGGCAGGACTTTCCTTTTGGTGGATCTAAATAT 1422 |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1342 GTAGTTTGTATAAAAGTGAAAAGGAAATGGCAGGTCTTTCCTTTTGGTGGATCTAAATAT 1401 Query 1423 TGGTTTGGTTTGGTGTACATAATGTGGTATAGGAAAATAATGATTATTTGTAGGTTAAAT 1482 ||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1402 TGGTTTGGT--G-T--ACATAATGTGGTATAGGAAAATAATGATTATCTGTAGGTTAAAT 1456 Query 1483 ACA 1485 ||| Sbjct 1457 ACA 1459 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59230330975 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5