BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23000.1
Length=3834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945818 jgi|Araly1|945818|scaffold_702047.1 5096 0.0
Ahg895377 jgi|Araly1|895377|Al_scaffold_0006_3373 1568 0.0
> Ahg945818 jgi|Araly1|945818|scaffold_702047.1
Length=3093
Score = 5096 bits (2759), Expect = 0.0
Identities = 2957/3055 (97%), Gaps = 4/3055 (0%)
Strand=Plus/Plus
Query 782 GAGCTATGGGCTCTGATAAAAATTCTGCTCGTTTTCTACATAACCTCAAGATGGAGAGGG 841
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 20 GAGCTATGGGCTCTGATAAGCATTCTGCTCGTTTTCTACATAACCTCAAGATGGAGAGGG 79
Query 842 TCAGAACGATTTTAACCCATACTTACCCGTA-CCCGCATGAGCATTCACGTCATGCTATG 900
|||||||||| |||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct 80 TCAGAACGATCCTAACCCATACTTACCCTTATCCC-CATGAGCATTCACGTCATGCTATG 138
Query 901 ATTGCTGTGGTTTTGGGTTGCATGTTCTTTATTTCGTCGGAGAACATGCACAGCCTCGTA 960
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 139 ATTGCTGTGATTTTGGGTTGCTTGTTCTTTATTTCGTCGGAGAACATGCACAGCCTCGTA 198
Query 961 GAGAAGTTGGACAATAATTTCAAGTGGTGGTCCATGTATGCCTGCTTGCTTGGGTTTTTC 1020
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 199 GAAAAGTTGGACAATAATTTCAAGTGGTGGTCCATGTATGCCTGCTTGCTTGGATTTTTC 258
Query 1021 TATTTCTTTTCATCTCCTTTCATCAAAAAGACTATCCGACCAAGCTACTCAACCTTCAGT 1080
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 259 TATTTCTTTTCATCTCCATTCATCAGAAAGACTATCCGACCAAGCTACTCAACCTTCAGT 318
Query 1081 CGGTGGTACATTGCTTGGATTTTAGTTGCAGCTTTGTACCATCTCCCAAGTTTTCAGTCA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CGGTGGTACATTGCTTGGATTTTAGTTGCAGCTTTGTACCATCTCCCAAGTTTTCAGTCA 378
Query 1141 ATGGGTTTGGATTTGAGGATGAATTTGTCCTTGTTTCTAACAATTTACATATCATCCATA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 ATGGGTTTGGATTTGAGGATGAATTTGTCCTTGTTTCTAACAATTTACATATCATCCATA 438
Query 1201 GTTTTCCTACTTGTCTTCCACATTATTTTTCTTGGGCTTTGGTATATTGGTCTTGTTTCT 1260
|| ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 439 GTCTTCCTTCTTGTCTTTCACATTGTTTTTCTTGGGCTTTGGTATATTGGTCTTGTTTCT 498
Query 1261 CGTGTGGCTGGAAGACGCCCAGAGATCTTAACCATTCTTCAAAGTTGTGCTGTTCTTAGC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CGTGTGGCTGGAAGACGCCCAGAGATCTTAACCATTCTTCAAAGTTGTGCTGTTCTTAGC 558
Query 1321 ATATCGTGCTGTATTTTCTACAGCCATTGTGGTAATCGTGCTTTTCAGAGACAAACACCC 1380
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 559 ATATCGTGCTGTATTTTCTACAGCCATTGTGGTAATCGTGCTTTTCAGAGGCAAACACCC 618
Query 1381 CTCGAGAA-AAGGCATTCTAGCCGTTTTTCATTATGGAAAGGAGAAGATGGCAACAGTAC 1439
||||| || ||||||| ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 619 CTCGA-AAGAAGGCATGCTAGCCGGTTTTCATTATGGAAAGGAGAAGATGGAAACAGTAC 677
Query 1440 TTGGCTTGCGAAATTTACTCACATTGATGAGCTAAGAGACCAAGTCTGCTCATCATGGTT 1499
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 TTGGCTTGTGAAATTTACTCACATTGATGAGCTAAGAGACCAAGTCTGCTCATCATGGTT 737
Query 1500 TGCTCCTGTTGGATCTGCACGTGATTATCCATTATTGTCCAAATGGGTCATCTATGGGGA 1559
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 738 TGCTCCTGTTGGATCTGCACGTGATTATCCACTATTGTCCAAATGGGTCATTTATGGGGA 797
Query 1560 GTTGGCATGCAATGGGTCTTGTCCTGATTCATCTGATGAAATTTCTCCTATATACTCGTT 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 GTTGGCATGCAATGGGTCTTGTCCTGATTCATCTGATGAAATTTCTCCTATATACTCGTT 857
Query 1620 GTGGGCAACGTTTATTGGCCTTTACATTGCTAATTATGTAGTGGAGAGATCAACAGGGTG 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 GTGGGCAACGTTTATTGGCCTTTACATTGCTAATTATGTAGTGGAGAGATCAACAGGGTG 917
Query 1680 GGCACTGGCACACCCTCTGTCTGTCGAAAATTATGAGAAGTTGAAGAGACAACAAATGAA 1739
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 918 GGCTCTGGCACATCCTCTGTCTGTCGAAAATTATGAGAAGTTGAAGAGGCAACAAATGAA 977
Query 1740 ACCTAATTTCTTAGATATGGTTCCTTGGTATTCAGGAACTTCAGCTGATTTGTTTAAAAC 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 ACCTAATTTCTTAGATATGGTTCCTTGGTATTCAGGAACTTCAGCTGATTTGTTTAAAAC 1037
Query 1800 TGTGTTTGACCTCCTCGTATCAGTGACTGTCTTTCTTGGCCGCTTTGACATGCGAATGAT 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TGTGTTTGACCTCCTCGTATCAGTGACTGTCTTTCTTGGCCGCTTTGACATGCGAATGAT 1097
Query 1860 GCAGGCTGCAATGAACAAAGATTGTGATGGAAACAAGAGCAAGGAACTTTTATATGATCA 1919
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GCAGGCTGCAATGACCAAATATTGTGATGGAAACAAGAGCAAGGAACTTTTATATGATCA 1157
Query 1920 TTTTGCTGATAAGACTGACTTCTGGTTTGACTTCATGGCGGATACGGGTGATGGTGGGAA 1979
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1158 TTTTACTGATAAGACTGACTTCTGGTTTGACTTCATGGCGGATACTGGTGATGGTGGAAA 1217
Query 1980 TTCATCATATTCTGTCGCGAAACTTCTAGCTCAGCCTTTTATCAATGTTCCGCTAGATAA 2039
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1218 TTCATCATATTCTGTCGCGAAACTTCTAGCTCAGCCTTTTATCAAAGTCCCGCTAGAGAA 1277
Query 2040 TGATTCTATATCTCTAGAAAGGGGTAACATACTGCTTATTGGGGGAGATCTTGCATACCC 2099
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TGATTTTATATCTCTAGAAAGGGGTAACATACTGCTTATTGGGGGAGATCTTGCATACCC 1337
Query 2100 CAATCCATCAGCGTTTACATATGAAAAACGTCTATTTTGTCCTTTTGAATATGCGCTCCA 2159
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1338 CAATCCATCAGCGTTTACATATGAAAAACGTCTATTTTGTCCTTTTGAGTATGCGCTCCA 1397
Query 2160 ACCTCCCCATTGGTATAAAACGGACTCAATTTCTGTTAACAAGCCTGAATTACCTGATGG 2219
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1398 ACCTCCCCATTGGTATAAAACGGATTCAATTTCTGTTAACAAGCCTGAATTACCTGATGG 1457
Query 2220 GGTGTCTGATCTAAAGCATTATGACGGTCCTCAATGTTTTCTTATCCCAGGAAACCATGA 2279
|||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 1458 GGTGTCTGATCTGAAGCATTATGATGGTCCTCAATGCTTTCTTATCCCTGGAAACCATGA 1517
Query 2280 CTGGTTCGATGGACTAAATACTTTCATGAGGTATGTATGCCATAAAAGCTGGTTGGGTGG 2339
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1518 CTGGTTCGATGGACTAAATACTTTTATGAGGTATGTATGCCATAAAAGTTGGTTGGGTGG 1577
Query 2340 CTGGTTTATGCCCCAAAAGAAAAGCTATTTTGCCCTGCAGCTACCTAAAGGATGGTGGGT 2399
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1578 CTGGTTTATGCCCCAAAAGAAAAGCTATTTTGCGCTGCAGCTACCTAAAGGATGGTGGGT 1637
Query 2400 GTTTGGTTTGGATCTAGCGCTTCATGGTGATATTGATGTGTACCAGTTCAATTTCTTTTC 2459
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 GTTTGGTTTGGATCTTGCGCTTCATGGTGATATTGATGTGTACCAGTTCAATTTCTTTTC 1697
Query 2460 TAAATTAGTGAAGGAGAAGGTTGGGGAGAATGATGCAGTGATCATTATCACACATGAGCC 2519
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1698 TGAATTAGTGAAGGAGAAGGTTCGGGAGAATGATGCAGTGATCATTATCACACATGAGCC 1757
Query 2520 GAACTGGCTTCTTGATTGGTATTGGAAAGACGATACTGGAAAGAACATGCGACACCTGAT 2579
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1758 GAACTGGCTTCTTGATTGGTATTGGAAAGACGATACTGGAAAGAACATGAGGCACCTAAT 1817
Query 2580 ATTCGAATTTTTGAAAGGAAGGTGTAAACTTAGAATGGCAGGAGATTTGCATCATTATAT 2639
|||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1818 ATTCGACTTTTTAAAAGGAAAGTGTAAACTTAGAATGGCAGGAGATTTGCATCATTATAT 1877
Query 2640 GCGTCATTCATGTACTCAATCAGATGGACCTGTTCATGTCCCACATCTCCTTGTTAATGG 2699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1878 GCGTCATTCATGTACTCAATCAGATGGACCTGTTCATGTCCCACATCTCCTTGTTAATGG 1937
Query 2700 CTGTGGAGGGGCTTTTTTGCATCCCACCCATGTGTTCCGCTGCTTTTCAAAGTTTTATGG 2759
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1938 CTGTGGAGGGGCTTTTTTGCATCCCACCCATGTGTTCCGCAGCTTTTCAAAGTTTTATGG 1997
Query 2760 TGCTTCTTATGAAAGTAAATCTGCCTATCCTTCATTTGAAGATTCAAGCAGGATTGCTCT 2819
|||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |
Sbjct 1998 TGCTTCTTATGAAAGTAAATCTGCTTATCCTTCTTTTGATGATTCAAGCAGGATTGCTTT 2057
Query 2820 GGGAAATATTTTAAAGTTCAGGAAAAAGAACTGGCAATTTGATTTCATTGGTGGCATCAT 2879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2058 GGGAAATATTTTAAAGTTCAGGAAAAAGAACTGGCAATTTGATTTCATTGGTGGCATCAT 2117
Query 2880 ATACTTTCTCTTGGTCTTTTCCTTGTTCCCTCAGTGTGAGCTAGGCCATATCTTACGAGG 2939
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2118 ATACTTTCTCTTGGTCTTTTCCTTGTTCCCTCAGTGTAAGCTAGGCCATATCTTACGAGG 2177
Query 2940 CGATTCATTTTCTGGCCACTTGGGGAGTTTCTTTGGCACAGTTTGGAGCTCCTTTGTGTA 2999
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2178 TGATTCATTTTCTGGCCACCTGGGGAGTTTCTTTGGCACAGTTTGGAGCTCCTTTGTGTA 2237
Query 3000 TGTAACAGAGCAGTCATATGTGTCTTTCACCGGGGTTCTTATGTTGCTAATAACTGCAAT 3059
|||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2238 CGTAATAGAGCAGTCATATGTGTCTTTCACTGGTGTTCTTATGTTGCTAATAACTGCAAT 2297
Query 3060 TATGTTTGTTCCCTCAAAAATATCTCGGAGGAAACGACTGTTAATTGGAATTCTTCATGT 3119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2298 TATGTTTGTACCCTCAAAAATATCTCGGAGGAAACGACTGTTAATTGGAATTCTTCATGT 2357
Query 3120 TTCTGCACACCTGATGGCTGCTTTGATTCTTATGTTGCTGTTGGAACTCGGCATAGAAAT 3179
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2358 TTCTGCACACCTTACGGCTGCTTTGATTCTTATGTTGCTGTTGGAACTCGGCATAGAAAT 2417
Query 3180 CTGTATTCAGCATAAGCTCCTTGCAAACTCCGGGTATCATACATTGTATCAGTGGTACAA 3239
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 2418 CTGTATTCAGCATAAGCTCCTTGCGACCTCCGGGTATCATACATTGTATCAGTGGTACAA 2477
Query 3240 ATCAGTAGAAAATGAACATTTTCCGGACCCTACTGGCCTCCGAGACCGTATTGAGCAGTG 3299
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2478 ATCAGTAGAAAACGAACACTTTCCGGACCCTACTGGCCTCCGAGACCGTATTGAACAGTG 2537
Query 3300 GACGTTCGGATTATATCCTGCCTGCATCAAGTATCTTATGTCAGCATTTGATATTCCCGA 3359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2538 GACGTTCGGATTTTATCCTGCCTGCATCAAGTATCTTATGTCAGCATTTGATATTCCTGA 2597
Query 3360 GGTGATGGCGGTTACACGGACTAACATCTGTCGAGAAGGAATGGAGTCACTTTCTCGAAG 3419
||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 2598 GGTGATGGCGGTTACACGGACAAACATATGTCGAGAAGGAATGGAGTCGCTTTCTCGAAG 2657
Query 3420 CGGAGCAGCCATCTATTATGCTTCTGTGTTCCTCTACTTTTGGGTCTTCTCAACCCCTGT 3479
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 2658 CGGAGCAGCCATCTATTATGCTTCTGTCTTCCTCTACTTCTGGGTCTTCTCAACTCCTGT 2717
Query 3480 TGTATCTTTGGTTTTTGGAAGTTACTTATATATATCCATCAACTGGCTTCACATACACTT 3539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2718 TGTATCTTTGGTTTTCGGAAGTTACTTATATATATCCATCAACTGGCTTCACATACATTT 2777
Query 3540 TGATGAAGCATTTTCTTCACTTCGGATCGCCAATTACAAATCATTCACCCGTTTCCACAT 3599
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2778 TGATGAAGCATTCTCTTCACTTCGGATCGCCAATTACAAATCATTCACCCGTTTCCACAT 2837
Query 3600 CAAACCTGATGGAGACCTTGAAGTCTTCACTCTCGGAGTAGACAAGGTGCCAAAGGAATG 3659
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2838 CAAGCCTGATGGAGACCTTGAAGTCTTCACCCTCGGAGTAGACAAGGTGCCAAAGGAATG 2897
Query 3660 GAAGCTGGACAAGGACTGGGATGCAGAGCCGAGATCGACTGTGAAAATGAGTCATCACAG 3719
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2898 GAAGCTGGACAAGGACTGGGACGCAGAGCCGAGATCGACTGTGAAAATGAGTCATCACAG 2957
Query 3720 AAGGTTTCCAAGCAAATGGTGTGCAACAACATTGCAGCAGGATCCTGTCAACACCGTAAA 3779
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2958 AAGGTTTCCAAGCAAATGGTGTGCAACAACATTGCAGCAAGATCCTGTCAACACCGTAAA 3017
Query 3780 GATTGTCGATAAGTTTGTTATTCATAGATCAGAGAAAGAAACTGGAGGATCTTAG 3834
||| || ||| | |||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 3018 GATCGTAGATCATTTTGTTATTCGTAGATCAGAGAAAGAAATTGGAGGATGTTAG 3072
> Ahg895377 jgi|Araly1|895377|Al_scaffold_0006_3373
Length=3084
Score = 1568 bits (849), Expect = 0.0
Identities = 1340/1576 (85%), Gaps = 37/1576 (2%)
Strand=Plus/Plus
Query 2279 ACTGGTTCGATGGACTAAATACTTTCATGAGGTATGTATGCCATAA-AAGCTGGTTGGGT 2337
||||||| || ||||| |||||||||||||||||| |||||||||| || ||||| ||
Sbjct 1526 ACTGGTTTGACGGACTCAATACTTTCATGAGGTATATATGCCATAAGAA-TTGGTTAGGC 1584
Query 2338 GGCTGGTTTATGCCCCAAAAGAAAAGCTATTTTGCCCTGCAGCTACCTAAAGGATGGTGG 2397
|||||| | |||||||| ||||||||||||||||| ||||| || || || |||||||||
Sbjct 1585 GGCTGGCTAATGCCCCAGAAGAAAAGCTATTTTGCGCTGCATCTTCCCAAGGGATGGTGG 1644
Query 2398 GTGTTTGGTTTGGATCTAGCGCTTCATGGTGATATTGATGT-GTACCAGTTCAATTTCTT 2456
||||||||||||||||| || |||||||||||||||||||| | |||||||||| |||||
Sbjct 1645 GTGTTTGGTTTGGATCTTGCACTTCATGGTGATATTGATGTCG-ACCAGTTCAAATTCTT 1703
Query 2457 TTCTAAATTAGTGAAGGAGAAGGTTGGGGAGAATGATGCAGTGATCATTATCACACATGA 2516
||| |||| |||||||| |||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 1704 TTCCGAATTGGTGAAGGACAAGGTTGGTGAGAATGATGCTGTGATTATTATCACGCATGA 1763
Query 2517 GCCGAACTGGCTTCTTGATTGGTATTGGAAAGACGATACTGGAAAGAACATGCGACACCT 2576
|| |||||||||||||||||||| |||| | |||||| || |||||| || |||| ||
Sbjct 1764 ACCAAACTGGCTTCTTGATTGGTACTGGAGCGGCGATACAGGGAAGAACGTGAGACATCT 1823
Query 2577 GATATTCGAATTTTTGAAAGGA-AGGTGTAAACTTAGAATGGCAGGAGATTTGCATCATT 2635
||| | ||| |||||||| | ||||| ||||||||||||||||| |||||||||||||
Sbjct 1824 GATCTGCGACGTTTTGAAA-TACAGGTGCAAACTTAGAATGGCAGGGGATTTGCATCATT 1882
Query 2636 ATATGCGTCATTCATGTACTCAATCAGATGGACCTGTTCATGTCCCACATCTCCTTGTTA 2695
||||||| |||||||||| ||||||||||||||||| ||||||| |||||| |||||||
Sbjct 1883 ATATGCGACATTCATGTAATCAATCAGATGGACCTGCCCATGTCCAACATCTTCTTGTTA 1942
Query 2696 ATGGCTGTGGAGGGGCTTTTTTGCATCCCACCCATGTGTTCCGCTGCTTTTCAAAGTTTT 2755
||||||||||||| |||||| |||||||||| ||||||||| || ||||||||||||||
Sbjct 1943 ATGGCTGTGGAGGAGCTTTTCTGCATCCCACTCATGTGTTCAGCAACTTTTCAAAGTTTT 2002
Query 2756 ATGGTGCTTCTTATGAAAGTAA-ATCTGCCTATCCTTCATTTGAAGATTCAAGCAGGATT 2814
|||| || || |||| ||| || | |||||| || || ||||| |||||||||| |||
Sbjct 2003 ATGGGGCCTCCTATGGAAGCAAGGT-TGCCTACCCCTCTTTTGATGATTCAAGCAAAATT 2061
Query 2815 GCTCTGGGAAATATTTT-AAAGTTCAGGAAAAAGAACTGGCAATTTGATTTCATTGGTGG 2873
||| ||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 2062 GCTTTGGGAAATATTTTGAAA-TTCCGGAAAAAGAACTGGCAATTTGATTTCATTGGTGG 2120
Query 2874 CATCATATACTTTCTCTTGGTCTTTTCCTTGTTCCCTCAGTGTGAGCTAGGC-CATATCT 2932
||| ||||||||| ||||||||||||| ||||||||||||||| |||||| | || |||
Sbjct 2121 CATTATATACTTTATCTTGGTCTTTTCATTGTTCCCTCAGTGTAAGCTAG-CTCACGTCT 2179
Query 2933 TACGAGGCGATTCATTTTCTGGCCACTTGGGGAGTTTCTTTGGCACAGTTTGGAGCTCCT 2992
||||||| ||||| |||||||| ||| ||| ||||||||| ||||||||||||||| |||
Sbjct 2180 TACGAGGTGATTCGTTTTCTGGTCACCTGGAGAGTTTCTTAGGCACAGTTTGGAGCGCCT 2239
Query 2993 TTGTGTATGTAACAGAGCAGTCATATGTGTCTTTCACCGGGGTTCTT-ATGTTGCTAATA 3051
||| |||||| | || || || ||||||||||| ||||| || ||| |||||||| |||
Sbjct 2240 TTGCGTATGTGATGGAACAATCTTATGTGTCTTTTACCGGTGT-CTTGATGTTGCTGATA 2298
Query 3052 ACTGCAATTATGTTTGTTCCCTCAAAAATATCTCGGAGGAAACGACTGTTAATTGGAATT 3111
|||||||||| ||||| ||||||||| |||||| || |||| | | ||||||||| ||
Sbjct 2299 ACTGCAATTACATTTGTCCCCTCAAAAGTATCTCCGAAGAAAAGGGTTTTAATTGGAGTT 2358
Query 3112 CTTCATGTTTCTGCACACCTGATGGCTGCTTTGATTCTTATGTTGCTGTTGGAACTCGGC 3171
||||||||| |||| ||||||||||||||| ||||||| |||||| |||||||||| |||
Sbjct 2359 CTTCATGTTGCTGCTCACCTGATGGCTGCTCTGATTCTCATGTTGATGTTGGAACTGGGC 2418
Query 3172 ATAGAAATCTGTATTCAGCATAAGCTCCTTGCAAACTC--C-GGGTATCATACATTGTAT 3228
||||||||||||||||||||||| ||||||||||| || | |||||||||||||| |||
Sbjct 2419 ATAGAAATCTGTATTCAGCATAATCTCCTTGCAAATTCTGCAGGGTATCATACATTATAT 2478
Query 3229 CAGTGGTACAAATCAGTAGAAAATGAACATTTTCCGGACCCTACTGGCCTCCGAGACCGT 3288
|||||||||||||||| |||||||| ||||| ||||||||||||||||| |||| |||
Sbjct 2479 GAGTGGTACAAATCAGTGGAAAATGAGCATTTCCCGGACCCTACTGGCCTTCGAGCCCGG 2538
Query 3289 ATTGAGCAGTGGACGTTCGGATTATATCCTGCCTGCATCAAGTATCTTATGTCAGCATTT 3348
|| || || |||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 2539 ATCGAACAATGGACGTTTGGCTTATATCCTGCGTGCATCAAGTATCTTATGTCAGCATTT 2598
Query 3349 GATATTCCCGAGGTGATGGCGGTTACACGGACTAACATCTGTCGAGA-A-GGAATGGAGT 3406
||| |||| ||||||||||||||||| ||||| ||||| || | | | | |||||||| |
Sbjct 2599 GATGTTCCTGAGGTGATGGCGGTTACCCGGACCAACATTTG-CAA-ACATGGAATGGAAT 2656
Query 3407 CACTTTCTCGAAGCGGAGCAGCCATCTATTATGCTTCTGTGTTCCTCTACTTTTGGGTCT 3466
||||||| ||||||||||| | ||||||||||||||||| ||||| ||||||||||| |
Sbjct 2657 CACTTTCCCGAAGCGGAGCTGTTATCTATTATGCTTCTGTCTTCCTTTACTTTTGGGTTT 2716
Query 3467 TCTCAACCCCTGTTGTATCTTTGGTTTTTGGAAGTTACTTATATATATCCATCAACTGGC 3526
||||||| ||||| || ||| |||| |||||||| ||||| ||||| | ||||||||||
Sbjct 2717 TCTCAACTCCTGTAGTGTCTATGGTATTTGGAAGCTACTTGTATATCTGCATCAACTGG- 2775
Query 3527 TTC-ACATACACTTTGATGAAGCATTT-TCTTCACTTCGGATCGCCAATTACAAATCATT 3584
||| || |||||||||||||||| ||| |||||||| || || |||||||||||||| ||
Sbjct 2776 TTCCACCTACACTTTGATGAAGC-TTTCTCTTCACTCCGCATTGCCAATTACAAATCTTT 2834
Query 3585 CACCCGTTTCCACATCAAACCTGATGGAGACCTTGAAGTCTTCACTCTCGGAGTAGACAA 3644
|||||||||||||||| | ||||||||| ||||||| ||||| || | ||| || ||
Sbjct 2835 CACCCGTTTCCACATCCTAGAAGATGGAGACATTGAAGTTTTCACACTTGCAGTTGATAA 2894
Query 3645 GGTGCCAAAGGAATGGAAGCTGGACAAGGACTGGGATGCAGAGCCGAGATC-GACTGTGA 3703
||||||||| || ||||| |||||||| || |||||| ||||||||| | | || | | |
Sbjct 2895 GGTGCCAAAAGACTGGAAACTGGACAAAGATTGGGATTCAGAGCCGAAA-CAGAGTTTCA 2953
Query 3704 AAATGAG-TCATCACAGA-AGGTTTCCAAGCAAATGGTGTGCAACAACATTGCAGCAGGA 3761
| ||||| | || | ||| || |||||||| |||||| |||| ||||| || || ||
Sbjct 2954 AGATGAGCT-ATGAGAGAGAG-TTTCCAAGTAAATGGGGTGCCTCAACAGCCCAACAAGA 3011
Query 3762 TCCTGTCAACACCGTAAAGATTGTCGATAAGTTT-GTTATTCATAGATCAGAGAAAG-AA 3819
||||| || || |||||||| || ||| |||| || |||||||||||| | |||| ||
Sbjct 3012 CCCTGTTAATACGGTAAAGATAGTTGATC-GTTTCGTCATTCATAGATCACA-AAAGGAA 3069
Query 3820 A-CTGGAGGATCTTAG 3834
| | |||| || ||||
Sbjct 3070 AAC-GGAGAATGTTAG 3084
Score = 1496 bits (810), Expect = 0.0
Identities = 1275/1496 (85%), Gaps = 46/1496 (3%)
Strand=Plus/Plus
Query 803 ATTCTGCTCGTTT-TCTACATAAC-CT-CAAGATGGAGAGGGTCAGAACGATTTTAACCC 859
||||||||||||| | || || | || | | ||||||||||||||||||||| ||||||
Sbjct 17 ATTCTGCTCGTTTATATA-AT-TCTCTCCCA-ATGGAGAGGGTCAGAACGATTCTAACCC 73
Query 860 ATACTTACCCGTACCCGCATGAGCATTCACGTCATGCTATGATTGCTGTGGTT-TTGGGT 918
|||| ||||| || |||||||||||||||||||||||||| |||||||| || || |||
Sbjct 74 ATACCTACCCTTATCCGCATGAGCATTCACGTCATGCTATCATTGCTGT-ATTCTTTGGT 132
Query 919 TGCATGTTCTTTATTTCGTCGGAGAACATGCACAGCCTCGTAGAGAAGTTGGACAATAAT 978
||| | ||||||||||| ||||| |||||||| | |||| |||| ||||| | |
Sbjct 133 TGCCTATTCTTTATTTCATCGGATAACATGCAAACCCTCATAGAAAAGTT-----TTCA- 186
Query 979 TTCAAGTGGTGGTCCATGTATGCCTGCTTGCTTGGGTTTTTCTATTTCTTTTCATCTCC- 1037
|||||||||||||||||||||| |||||||| || |||||||| |||||||| |||||
Sbjct 187 GTCAAGTGGTGGTCCATGTATGCATGCTTGCTCGGATTTTTCTACTTCTTTTCTTCTCCA 246
Query 1038 TTTCATCAAAAAGACTATCCGACCAAGCTACTCAACCTTCAGTCGGTGGTACATTGCTTG 1097
||| ||| | ||||||||| |||||| || |||| ||||||||||||||||||||| ||
Sbjct 247 TTT-ATCCAGAAGACTATCAGACCAAATTATTCAAACTTCAGTCGGTGGTACATTGCCTG 305
Query 1098 GATTTTAGTTGCAGCTTTGTACCATC-TCCCAAGTTTTCAGTCAATGGGTTTGGATTTGA 1156
||||||||||||||||||||| |||| ||| || ||||||||||||||||||||||||||
Sbjct 306 GATTTTAGTTGCAGCTTTGTATCATCTTCCTAA-TTTTCAGTCAATGGGTTTGGATTTGA 364
Query 1157 GGATGAATTTGTCCTTGTTTCTAACAATTTACATATCATCCATAGTTTTCCTACTTGTCT 1216
|||||||||||||||||||||||||||||||||| || |||||| | ||||| ||||||
Sbjct 365 GGATGAATTTGTCCTTGTTTCTAACAATTTACATCTCTTCCATACTCTTCCTTGTTGTCT 424
Query 1217 TCCACATTATTTTTCTTGGGCTTTGGTATATTGGTCTTGTTTCTCGTGTGGCTGGAAGAC 1276
||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct 425 TCCACATCATTTTTCTTGGCCTTTGGTATGTTGGTCTTGTTTCTCGCGTGGCTGGAAGAC 484
Query 1277 GCCCAGAGATCTTAACCATTCTTCAAAGTTGTGCTGTTCTTAGCATATCGTGCTGTAT-T 1335
||||||||||||||||||||||||||| ||| |||||||||||||| | |||||||| |
Sbjct 485 GCCCAGAGATCTTAACCATTCTTCAAAATTGCGCTGTTCTTAGCATGGCTTGCTGTATAT 544
Query 1336 TTCTACAGCCATTGTGGTAATCGTGCT-TTTCAGAGACAAACACCCCTCGAGAA-A-AGG 1392
|| |||||||||||||||||||| ||| ||| ||| |||| ||| | | ||| | ||
Sbjct 545 TT-TACAGCCATTGTGGTAATCGAGCTATTTT-GAGGCAAAAACCAGTTG-GAAGACAGT 601
Query 1393 CATTCTAGCCGTTTTTCATTATGGAAAGGAGAAGAT-GGCAACAGTACTTGGCTTGCGAA 1451
|||||||| | ||||| || |||||| ||||| || |||| || ||| |||||||| ||
Sbjct 602 -ATTCTAGCTGGTTTTCGTTTTGGAAAAGAGAACATAGGCA-CAATACATGGCTTGCAAA 659
Query 1452 ATTTACTCACATTGA-TGAGCT-AAGAGACCAAGTCTGCTCATCATGGTTTGCTCCTGTT 1509
||| | || || || |||||| || ||||||||| || || || ||||||||||| |||
Sbjct 660 ATTCATTCGTAT-GAATGAGCTGAA-AGACCAAGTGTGTTCGTCGTGGTTTGCTCCAGTT 717
Query 1510 GGATCTGCACGTGATTATCCATTATTGTCCAAATGGGTCATCTATGGGGAGTTGGCATGC 1569
||||||||| ||||||||||| | || ||||||||| |||| || |||||| | ||||||
Sbjct 718 GGATCTGCAAGTGATTATCCACTGTTATCCAAATGGTTCATTTACGGGGAGATCGCATGC 777
Query 1570 AATGGGTCTTGTCCTGATTCATCTGATGAAATTTCTCCTATATACTCGTTGTGGGCAACG 1629
||||| || |||||||||||| |||| |||||||||||||||||||| |||||||| ||
Sbjct 778 AATGGATCATGTCCTGATTCAGCTGACGAAATTTCTCCTATATACTCATTGTGGGCCACA 837
Query 1630 TTTATTGGCCTTTACATTGCTAATTATGTAGTGGAGAGATCAACAGGGTGGGCACTGGCA 1689
||||| || ||||||||||| ||||||||||||||||||||||| |||||||| ||| ||
Sbjct 838 TTTATCGGTCTTTACATTGCCAATTATGTAGTGGAGAGATCAACTGGGTGGGCTCTGACA 897
Query 1690 CACCCTCTGTCTGTCGA-AAATTATGAGAAGTTGAAGAGA-CAACAAATGAAACCTAATT 1747
||||||||||| ||||| |||| |||||||| |||||| | || ||| |||||||| |||
Sbjct 898 CACCCTCTGTCAGTCGACAAAT-ATGAGAAGCTGAAGA-ATCAGCAATTGAAACCTGATT 955
Query 1748 TCTTAGATATGGTTCCTTGGTATTCAGGAACTTCAGCTGATTTGTTTAAAACTGTGTTTG 1807
||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 956 TCTTAGATATGGTTCCTTGGTATTCAGGAACATCGGCTGATTTGTTTAAAACAGTGTTTG 1015
Query 1808 ACCTCCTCGTATCAGTGACTGTCTTTCTTGGCCGCTTTGACATGCGAATGATGCAGGCTG 1867
|||||||||| |||||||| || ||| ||||||| ||||||||||| ||| |||||||||
Sbjct 1016 ACCTCCTCGTGTCAGTGACAGTATTTGTTGGCCGTTTTGACATGCGGATGCTGCAGGCTG 1075
Query 1868 CAATGAACAAAGATTGTGATGGAAACAAGA-GCAAGGAACTTTTATATGATCATTTTGCT 1926
|||||| |||| | |||||| | | || | |||||||||||||||||||| |||||
Sbjct 1076 CAATGACCAAATCTGGTGATGCTA-CTGGAAGGAAGGAACTTTTATATGATCACCTTGCT 1134
Query 1927 GATAAG-ACTGACTTCTGGTTTGACTTCATGGCGGATACGGGTGATGGTGGGAATTCATC 1985
|||||| | || || |||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 1135 GATAAGCAA-GATTTTTGGTTTGATTTCATGGCGGATACTGGTGATGGTGGTAATTCATC 1193
Query 1986 ATATTCTGTCGCGAAACTTCTAGCTCAGCCTTTTATCA-ATGTTCC-GCTAGATAATGAT 2043
|||| ||| || |||||||| |||||||| | | ||| | || || | | | | || ||
Sbjct 1194 ATATAGTGTTGCAAAACTTCTTGCTCAGCCATCTCTCAGA-GTGCCAG-TGGCTGATAAT 1251
Query 2044 TCTATATCTCTAGAAAGGGGTAACATACTGCTTATTGGGGGAGATCTTGCATACCCCAAT 2103
| ||||||||| | | || || ||||||||||||| ||||||||||||||||| |||
Sbjct 1252 TTTATATCTCTTCCACGAGGCAATGTACTGCTTATTGGAGGAGATCTTGCATACCCAAAT 1311
Query 2104 CCATCAGCGTTTACATATGAAAAACGTCTATTTTGTCCTTTTGAATATGCGCTCCAACCT 2163
|| ||||| |||||||||||||||||||| |||||||| ||||| |||||||| || |||
Sbjct 1312 CCGTCAGCTTTTACATATGAAAAACGTCTCTTTTGTCCGTTTGAGTATGCGCTGCAGCCT 1371
Query 2164 CCCCATTGGTATAAAACGGACTCAATTTCTGTTAACAAGCCTGAATTACCTGATGGGGTG 2223
|||| ||||||||||| ||||| ||| ||||| |||||||||||||||| |||| |||
Sbjct 1372 CCCCGTTGGTATAAAAATGACTCTATTGCTGTTGACAAGCCTGAATTACCCAATGGAGTG 1431
Query 2224 TCTGATCTAAAGCA-TTATGACGGTCCTCAATGTTTTCTTATCCCAGGAAACCATG 2278
|||||||| ||| | |||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1432 TCTGATCTGAAG-AGTTATGAAGGTCCTCAATGTTTTCTCATCCCTGGAAACCATG 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144885180411
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5