BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23010.3
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492565 jgi|Araly1|492565|fgenesh2_kg.7__1998__AT4G23010.2 1024 0.0
> Ahg492565 jgi|Araly1|492565|fgenesh2_kg.7__1998__AT4G23010.2
Length=1475
Score = 1024 bits (554), Expect = 0.0
Identities = 660/706 (93%), Gaps = 28/706 (4%)
Strand=Plus/Plus
Query 267 ATAATACCGTTATGAGTCATCACTTTACATGTGTTTGATCAATTACTCT---TAATTCAC 323
|||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||
Sbjct 137 ATAATACCGTTATGAG---TCACTTTACATGTGTTTGATCAATTCCTCTGAATAATTCAC 193
Query 324 TTTCTGGGTTTCTTCCTTTGAATCTCTCCTCaaagaaaagaaaagaaaaaTGAAGGAGGA 383
|||||||| | | ||| | |||| |||| | |||||||||||||||
Sbjct 194 TTTCTGGG----------T---T-TCT--T-AAAG-AAAG---A-AAAAATGAAGGAGGA 231
Query 384 ACAAACAAGATCTCTGTTTGGAATCTCTTTGTCTGATAAACCAACTTGGCAACAGTTTCT 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ACAAACAAGATCTCTGTTTGGAATCTCTTTGTCTGATAAACCAACTTGGCAACAGTTTCT 291
Query 444 CATTTGCACTTCTGGTTTCTTTTTTGGTTATCTCGTTAACGGTGTTTGCGAGGAATATGT 503
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 292 CATTTGCACTTCTGGTTTCTTTTTTGGTTATCTCGTTAACGGAGTCTGCGAGGAATATGT 351
Query 504 TTATAATCGTCTTCAATTTAGCTTTGGGTGGTATTTCACGTTTATACAAGGATTTGTCTA 563
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 352 TTATAATCGTCTCCAATTTAGCTTTGGTTGGTATTTCACGTTTATACAAGGATTTGTCTA 411
Query 564 CTTGTTTCTAATCTACCTTCAAGGCTTTACCACAAAGCATATAGTTAATCCGATGAGAAC 623
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 412 CTTGTTTCTAATCTATCTTCAAGGCTTTACCACAAAGCATATCGTTAATCCGATGAGGAC 471
Query 624 TTATGTCAAACTCTCTGCTGTTCTCATGGGTTCACATGGTTTAACCAAAGGATCTTTGGC 683
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 472 TTATGTCAAACTCTCTGCTGTTCTCATGGGATCACATGGTTTAACCAAAGGATCTTTGGC 531
Query 684 TTATCTCAATTATCCAGCTCAAATCATGTTCAAATCCACCAAGGTGTTACCGGTGATGAT 743
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 532 TTATCTCAATTATCCAGCTCAAATCATGTTCAAATCCACCAAGGTGTTGCCGGTGATGAT 591
Query 744 AATGGGAGCGTTTATACCCGGTCTTAGAAGAAAATACCCAGTCCATGAATACATTTCAGC 803
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 592 AATGGGAGCGTTTATACCCGGTCTGAGAAGAAAATACCCAGTCCATGAATACATTTCAGC 651
Query 804 GTTCTTGCTTGTTCTTGGTTTGATCCTATTCACATTAGCCGATGCGCAAATGTCTCCAAA 863
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 652 GTTCTTGCTGGTTCTTGGTTTGATACTATTCACATTAGCCGATGCGCAAATGTCTCCGAA 711
Query 864 TTTCAGTATGATTGGGATTATGATGATAACCGGTGCATTGATCATGGATGCTTTCTTGGG 923
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTTCAGCATGATTGGGATTATGATGATAACCGGTGCATTGATCATGGATGCTTTCTTGGG 771
Query 924 TAATCTGCAAGAAGCTATCTTCACAATGAATCCTGAGACAACTCAG 969
|||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 772 TAATTTACAAGAAGCTATCTTCACAATGAATCCTGAGACTACTCAG 817
Score = 612 bits (331), Expect = 3e-174
Identities = 391/419 (93%), Gaps = 7/419 (2%)
Strand=Plus/Plus
Query 1213 CATCCGTATGTGTATGGAGTGCTTGTATTTGAAGCCATGGCCACATTTATCGGTCAAGTC 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 CATCCGTATGTGTATGGAGTGCTTGTATTTGAAGCCATGGCCACATTTATCGGTCAAGTC 1027
Query 1273 TCCGTTCTCTCGCTTATTGCTCTCTTTGGAGCCGCCACAACTGCCTTGATAACAACGGCT 1332
|||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1028 TCCGTTCTATCGCTCATTGCCCTCTTTGGAGCCGCCACAACCGCCTTGATAACAACGGCG 1087
Query 1333 AGGAAAGGGGTTACATTGTTGCTGTCGTATTTGATATTCACAAAGCCGTTAACGGAACAG 1392
|||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1088 AGGAAAGGGGTTACGTTGTTGCTATCGTATTTGATATTTACAAAGCCGTTGACGGAACAG 1147
Query 1393 CACGGATCAGGCTTGCTGTTGATAGCAATGGGGATTGTATTGAAGATGGTTCCAATGGAT 1452
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 CATGGATCAGGCTTGCTGTTGATAGCAATGGGGATTGTATTGAAGATGGTTCCAATGGAT 1207
Query 1453 AGTAAAGCTCCGGCCAAGATTCCGGCGAGACCAGCGGTTAGGATCGCAGGAGGCGATGGT 1512
|||||||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 1208 AGTAAAGCTCCGACCAAGATTCCAACGAGACCAGCGGTTAGGATTGCAGGAGGGGATGGT 1267
Query 1513 GATAGAGAAGAGGACGAAGAAAGGAAGTCATTGGTTTGAGAAT-----GTGCCATGTATT 1567
|||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||
Sbjct 1268 GATAGAGAAGAGGAAGAAGAAAGGAAGTCACTGGTTTGAGAATATAATGTGCCATATATT 1327
Query 1568 TATATATATTTTATCTCACAAA-TTCAAA-GGGTTTATAGAATAATGTTGGATGAAGGA 1624
||||||||||| |||| ||||| |||||| ||||||||||||||||||||| |||||||
Sbjct 1328 TATATATATTTCATCTAACAAAATTCAAAAGGGTTTATAGAATAATGTTGGGTGAAGGA 1386
Score = 183 bits (99), Expect = 3e-45
Identities = 103/105 (98%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 967 CAGATGGAGATGCTTTTCTGCTCAACAGTTGTTGGATTACCGTTCTTGTTCGTTCCCATG 1026
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 863 CAGATGGAGATGCTTTTCTGCTCAACTGTTGTTGGATTACCGTTCTTGTTCGTTCCCATG 922
Query 1027 GTTTTAACCGGAGAGGTTTTTCGTGCGTGGACTGCGTGTGCACAA 1071
|| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 GTCTTAACCGGAGAGGTTTTTCGTGCGTGGACTGCGTGTGCACAA 967
Score = 171 bits (92), Expect = 2e-41
Identities = 126/140 (90%), Gaps = 12/140 (9%)
Strand=Plus/Plus
Query 102 ttccttcttaaaagctctcttcttcctcctcctcttttACC---A-AT--ACATCTATTA 155
|||||||||||||||||||||| | ||||||||||||||| | || |||||||||
Sbjct 1 TTCCTTCTTAAAAGCTCTCTTC-T--TCCTCCTCTTTTACCAATACATACACATCTATTT 57
Query 156 ACTCTCTCTTC-C-CTCTTCATCAAGTTTCTCGAGGAGAGTGAAGAATTTGGTTTTAATT 213
||||||| ||| | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 58 ACTCTCT-TTCTCTCTCTTCTTCAAGTTTCTCGAGGAGAGTGAAGAATTTGGTTTTAATT 116
Query 214 ATTCTTTGATTACCCTTTTT 233
||||||||||||||||||||
Sbjct 117 ATTCTTTGATTACCCTTTTT 136
Score = 52.8 bits (28), Expect = 8e-06
Identities = 31/32 (97%), Gaps = 1/32 (3%)
Strand=Plus/Plus
Query 1650 TCAGAGACTTGTTATTAGATTCTAAAGTGAAA 1681
|||||||||||||||||||||||||||| |||
Sbjct 1396 TCAGAGACTTGTTATTAGATTCTAAAGT-AAA 1426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5