BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G23630.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value Ahg945747 jgi|Araly1|945747|scaffold_701976.1 1373 0.0 > Ahg945747 jgi|Araly1|945747|scaffold_701976.1 Length=860 Score = 1373 bits (743), Expect = 0.0 Identities = 835/876 (95%), Gaps = 20/876 (2%) Strand=Plus/Plus Query 578 AAGATCTTTGCGTTTTGAAACGATGGCGGAAGAACATAAGCATGATGAATCTGTGATCGC 637 |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 AAGATC-TTGCG-TTTGAAACGATGGCGGAAGAACATAAGCATGAAGAATCTGTGATCGC 58 Query 638 TCCTGAGCCAGCTGTTGAGGTTGTGGAGAGAGAATCGTTGATGGATAAGATATCGGAGAA 697 |||||||||||||||||||||||||||||||||| | |||| |||||||||||||| Sbjct 59 TCCTGAGCCAGCTGTTGAGGTTGTGGAGAGAGAA-C-----TGGACAAGATATCGGAGAA 112 Query 698 GATCCATCACGGTGGTGATTCTTCTTCGTCTTCTTCATCTTCTGATGATGAAGACGAGAA 757 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 113 GATCCATCACGGTGGTGATTCTTCTTCGTCATCTTCATCTTCTGATGATGAAGACGAGAA 172 Query 758 GAAGAAGACTAAGAAGCCCTCTTCTCCTTCGTCTTCTATGAAATCGAAAGTTTACCGCTT 817 |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 173 GAAGAAGACTAAGAAGCCGTCTTCTCCTTCG---TCTATGAAATCGAAAGTTTACCGCTT 229 Query 818 GTTCGG-ACGAGAGCAGCCTGTTCATAAGGTTCTCGGCGGTGGAAAGCCGGCTGATATAT 876 |||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 230 GTTCGGTA-GAGAGCAGCCTGTTCATAAGGTTCTTGGCGGTGGAAAGCCGGCTGATATAT 288 Query 877 TCATGTGGAAGAACAAGAAGATGTCTGGTGGTGTACTTGGTGGTGCTACAGCTGCTTGGG 936 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 289 TCATGTGGAAGAACAAGAAGATGTCTGGTGGTGTACTTGGTGGTGCTACAGCTGCTTGGG 348 Query 937 TTGTGTTTGAATTGATGGAGTACCATCTTCTCACTCTGCTTTGCCACGTGATGATTGTTG 996 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 TTGTGTTTGAATTGATGGAGTACCATCTTCTCACTCTGCTTTGCCACGTGATGATTGTTG 408 Query 997 TTCTCGCTGTGCTGTTTTTGTGGTCTAATGCCACTATGTTCATTAACAAGTCCCCTCCAA 1056 |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 409 TTCTTGCTGTGCTGTTTTTGTGGTCTAATGCCACCATGTTCATTAACAAGTCCCCACCAA 468 Query 1057 AGATTCCTGAAGTTCATATCCCTGAAGAACCTATTCTTCAGCTTGCGTCTGGGCTCAGAA 1116 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 469 AGATTCCTGAAGTTCATATCCCTGAAGAGCCTATTCTTCAGCTTGCGTCTGGGCTCAGAA 528 Query 1117 TCGAGATCAACCGTGGATTCTCTTCTCTCCGTGAAATTGCATCAGGAAGGGATCTCAAGA 1176 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 529 TCGAGATCAACCGTGGATTCTCTTCTCTTCGTGAAATTGCATCTGGAAGGGATCTCAAGA 588 Query 1177 AATTCCTCATTGCTATTGCCGGGTTATGGGTTCTCTCAATCTTGGGCGGTTGCTTCAACT 1236 |||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||| Sbjct 589 AATTCCTCATTGCTATTGCCGGTTTGTGGGTTCTATCAATCTTGGGTGGTTGCTTCAACT 648 Query 1237 TCTTGACATTGGCATACATAGCTCTTGTGTTGCTCTTCACGGTTCCTCTTGCCTACGACA 1296 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 649 TCTTGACATTGGCATACATAGCTCTTGTGTTGCTCTTCACGGTTCCTCTTGCCTATGACA 708 Query 1297 AGTATGAAGACAAAGTCGACCCATTAGGTGAGAAAGCAATGATCGAGCTCAAGAAGCAGT 1356 ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 709 AGTATGAAGACAAAGTCGACCCATTAGGTGAGAAAGCGGTGATCGAGCTCAAAAAGCAGT 768 Query 1357 ATGCAGTGTTGGATGAGAAGGTGTTGAGCAAGATCCCACTTGGGCCG-TTGAAGAACAAG 1415 |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 769 ATGCAGTGTTGGATGAGAAGGTGTTGAGCAAGATCCCACT-GGGCCCATTGAAGAACAAG 827 Query 1416 AAGAAAGATTAGGGGTTTACACAAG--GTTGTCCGT 1449 ||||||||||||| ||||||| | ||||||||| Sbjct 828 AAGAAAGATTAGG--TTTACACT-GCTGTTGTCCGT 860 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67191192180 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5