BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G23640.1 Length=2847 Score E Sequences producing significant alignments: (Bits) Value Ahg945746 jgi|Araly1|945746|scaffold_701975.1 3886 0.0 Ahg947559 jgi|Araly1|947559|scaffold_703788.1 69.4 1e-10 > Ahg945746 jgi|Araly1|945746|scaffold_701975.1 Length=2371 Score = 3886 bits (2104), Expect = 0.0 Identities = 2277/2363 (96%), Gaps = 2/2363 (0%) Strand=Plus/Plus Query 174 TTACTCGCCGGCGGCTTGAATCATGGCTGATAGGAGAAACAGGTGTAACCAGATCCTCCT 233 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTACTCGCCGGCGGCTTAAATCATGGCTGATAGGAGAAACAGGTGTAACCAGATCCTCCT 60 Query 234 TTTAGCATACCAGAGTTTTGGCTTAGTGTTTGGAGATTTGAGTATTTCTCCTCTCTATGT 293 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 61 TTTAGCATATCAGAGTTTTGGCTTAGTGTTTGGAGATTTGAGTATTTCTCCTCTCTACGT 120 Query 294 GTATAAATGTACATTCTACGGAGGATTGAGACATCACCAAACAGAAGATACGATATTTGG 353 |||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 121 GTATAAATGTACTTTCTACGGAGGATTGAAACATCACCAAACAGAAGATACCATATTTGG 180 Query 354 CGCGTTTTCTTTGATATTTTGGACCATCACTCTCCTTTCACTCATCAAGTACATGGTTTT 413 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGCCTTTTCTTTGATATTTTGGACCATCACTCTCCTTTCACTCATCAAGTACATGGTTTT 240 Query 414 TGTGTTAAGTGCAGATGACAATGGTGAAGGAGGGATCTTTGCTTTGTATGCTTTGCTCTG 473 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TGTATTAAGTGCAGATGACAATGGTGAAGGAGGGATCTTTGCTTTGTATGCTTTGCTCTG 300 Query 474 CAGACACGCAAGATTTTCTTTGCTTCCAAATCAGCAAGCTGCTGATGAAGAAATCTCTAC 533 ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 301 CAGACACGCTAGATTTTCTTTGCTTCCCAATCAGCAAGCTGCTGATGAAGAAATCTCCAC 360 Query 534 ATACTATGGTCCTGGAGATGCAAGTAGAAATTTGCCTAGTTCTGCTTTCAAAAGCCTTAT 593 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 361 ATACTATGGCCCTGGAGATGCAAGTAGAAATTTGCCTGGTTCTGCTTTCAAAAGCCTTAT 420 Query 594 AGAACGAAATAAAAGATCAAAAACTGCTTTGCTTGTTTTAGTCTTGGTAGGAACTTCCAT 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AGAACGAAATAAAAGATCAAAAACTGCTTTGCTTGTTTTAGTCTTGGTAGGAACTTCCAT 480 Query 654 GGTAATAACCATCGGTGTCCTTACACCAGCAATTTCAGTCTCTTCGTCTATTGATGGCCT 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GGTAATAACCATCGGTGTCCTTACACCAGCAATTTCAGTCTCTTCGTCTATTGATGGCCT 540 Query 714 TGTGGCCAAGACAAGTCTGAAGCACAGTACTGTGGTCATGATAGCATGCGCTTTACTGGT 773 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 541 TGTGGCCAAGACAAGTCTGAAGCATAGTACTGTGGTCATGATAGCATGCGCTTTACTGGT 600 Query 774 TGGACTTTTTGTTCTGCAGCACCGTGGGACAAATAAAGTTGCCTTTCTATTTGCACCTAT 833 ||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct 601 TGGACTTTTCGTTCTGCAGCACCGTGGCACCAATAAAGTTGCCTTTCTCTTTGCACCTAT 660 Query 834 AATGATTTTGTGGTTGTTGATAATTGCAACTGCTGGTGTGTACAATATTGTGACTTGGAA 893 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 661 AATGATTTTGTGGTTGTTGATAATTGCAACTGTTGGTGTGTACAATATTGTGACTTGGAA 720 Query 894 CCCCAGTGTATACAAAGCCTTATCTCCCTACTATATCTATGTATTCTTTAGAGATACGGG 953 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || Sbjct 721 CCCCAGTGTATACAAAGCCTTATCTCCCTACTACATCTATGTATTCTTTAGAGACACTGG 780 Query 954 AATAGATGGATGGCTATCCCTTGGAGGCATTCTTTTATGCATCACAGGAACGGAGGCTAT 1013 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 781 AATAGATGGATGGCTATCCCTTGGAGGCATTCTTTTATGCATTACAGGAACGGAGGCTAT 840 Query 1014 CTTTGCTGAACTTGGCCAATTTACAGCCACATCTATAAGGTTTGCGTTTTGTTGTGTTGT 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CTTTGCTGAACTTGGCCAATTTACAGCCACATCTATAAGGTTTGCGTTTTGTTGTGTTGT 900 Query 1074 TTACCCGTGTCTGGTGCTTCAATACATGGGCCAAGCTGCGTTTTTATCAAAGAATTTTTC 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 TTACCCGTGTCTGGTGCTTCAATACATGGGCCAAGCTGCGTTTTTATCAAAGAATTTTTC 960 Query 1134 TGCTCTACCTTCAAGCTTTTATTCTTCCATTCCAGACCCATTTTTCTGGCCGGTTCTCAT 1193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TGCTCTACCTTCAAGCTTTTATTCTTCCATTCCAGACCCATTTTTCTGGCCGGTTCTCAT 1020 Query 1194 GATGGCTATGCTAGCTGCAATGGTCGCTAGTCAAGCAGTCATATTTGCCACGTTCTCGAT 1253 |||||||||||| |||||||||||||| || |||||||||||||||||||||||||| || Sbjct 1021 GATGGCTATGCTGGCTGCAATGGTCGCAAGCCAAGCAGTCATATTTGCCACGTTCTCAAT 1080 Query 1254 TGTCAAACAATGCTATGCATTGGGATGCTTCCCGCGTGTGAAGATTGTTCACAAACCAAG 1313 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1081 TGTCAAACAATGCTATGCATTGGGATGCTTCCCGCGCGTGAAGATTGTTCACAAACCAAG 1140 Query 1314 ATGGGTCCTTGGCCAGATTTACATCCCTGAGATCAATTGGGTTGTCATGATCCTCACCCT 1373 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 ATGGGTCCTTGGCCAAATTTACATCCCTGAGATCAATTGGGTTGTCATGATCCTCACCCT 1200 Query 1374 TGCTGTCACCATTTGTTTCCGAGACACTCGACACATAGCTTTTGCTTTTGGGCTCGCCTG 1433 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1201 CACTGTCACCATTTGTTTCCAAGACACTCGACACATAGCTTTTGCTTTTGGGCTCGCCTG 1260 Query 1434 CATGACTCTAGCCTTTGTGACTACTTGGTTGATGCCTCTCATCATCAACTTTGTCTGGAA 1493 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1261 CATGACTCTAGCCTTTGTGACAACTTGGTTGATGCCTCTCATTATCAACTTTGTCTGGAA 1320 Query 1494 CCGTAATATCGTCTTCTCCGTCCTCTTCATCCTCTTCTTCGGGACCATAGAACTTATCTT 1553 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1321 CCGTAATATCGTCTTCTCCGTCCTCTTCATCCTCTTCTTCGGGACCATAGAACTTGTCTT 1380 Query 1554 CGTTGCATCAGCCTTAGTCAAAATCCCTAAAGGAGGCTGGATCACTCTGCTCCTTTCCCT 1613 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1381 CGTTGCATCAGCCTTAGTCAAAATTCCTAAAGGAGGCTGGATCACTCTCCTCCTTTCCCT 1440 Query 1614 CTTCTTCACCTTCATCACATACGTATGGCATTACGGCAGCAGAAAGAAGTACCTATGCGA 1673 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 1441 CTTCTTCACCTTCATCACATATGTATGGCATTACGGCAGCAGAAAGAAATACCTGTGCGA 1500 Query 1674 CCAGCACAACAAGGTCCCTATGAAATCAATACTAAGCCTTGGCCCGAGCCTCGGGATCAT 1733 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1501 CCAGCACAACAAGGTCCCTATGAAATCAATCCTAAGCCTTGGCCCGAGCCTTGGGATCAT 1560 Query 1734 CAAAGTCCCCGGGATGGGTCTTATCTACACAGAGCTCGCCAGCGGTGTTCCTGCCACATT 1793 ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1561 CAAAGTCCCTGGGATGGGTCTTATCTACACCGAGCTCGCCAGCGGTGTTCCCGCCACATT 1620 Query 1794 TAAGCACTTTCTAACAAACTTACCGGCGTTCTACCAAGTTGTCGTCTTTGTCTGCTGCAA 1853 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1621 TACTCACTTTCTAACAAACTTACCGGCGTTCTACCAAGTTGTCGTCTTTGTCTGCTGCAA 1680 Query 1854 AACTGTCCCTATCCCGTATGTGCCGCAGAAAGAACGGTACCTTATCGGCCGGATTGGACC 1913 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1681 AACTGTCCCTATCCCGTATGTGCCGCAGAAAGAACGGTACCTTATCGGCCGGATTGGACC 1740 Query 1914 AAAAACATACAGGATGTACCGATGCATTATCCGAGCTGGCTACAAAGACGTGAACAAAGA 1973 ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1741 GAAAACATACAGGATGTACCGATGCATTATCCGAGCCGGTTACAAAGACGTGAACAAAGA 1800 Query 1974 CGGAGACGACTTTGAAGACGAGCTGGTGATGAGCATCGCCGAGTTTATCCAGCTAGAATC 2033 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1801 CGGAGATGACTTTGAAGACGAGCTGGTGATGAGCATTGCCGAGTTTATCCAGCTAGAATC 1860 Query 2034 CGAAGGCTATGGTGGCTCAAACACTGACCGTTCGATTGACGGTCGGCTCGCTGTTGTGAA 2093 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1861 TGAAGGCTACGGTGGCTCAAACACTGACCGTTCGATTGATGGTCGGCTCGCTGTTGTGAA 1920 Query 2094 AGCCTCAAACAAGTTTGGGACAAGGCTGTCTCGGTCTATATCCGAAGCCAACATCGCAGG 2153 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1921 AGCCTCAAACAAGTTTGGGACAAGGCTGTCTCGGTCTATATCCGAGGCCAACATTGCAGG 1980 Query 2154 CAGCTCGAGATCACAGACAACAGTAACAAACAGCAAGTCTCCGGCTCTACTTAAACTGAG 2213 |||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 1981 CAGCTCAAGATCACAGACAACAGTAACAAACAGCAAATCTCCGGCTCTACTTAGACTGAG 2040 Query 2214 AGCAGAGTATGAGCAAGAGCTTCCGAGGCTGAGCATGAGAAGGATGTTTCAGTTCAGACC 2273 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2041 AGCAGAGTATGAGCAAGAGCTTCCGAGACTGAGCATGAGAAGGATGTTTCAGTTCAGACC 2100 Query 2274 AATGGACACCAAGTTCAGGCAACCGCAGGTGAAGGAAGAGCTGTTTGATCTGGTGAATGC 2333 ||||||||| || ||||||||||| ||||||||||| ||||| |||||||||||||| || Sbjct 2101 AATGGACACTAAATTCAGGCAACCACAGGTGAAGGAGGAGCTCTTTGATCTGGTGAACGC 2160 Query 2334 TAAGGACGCTGAAGTGGCTTACATTGTCGGACACGGTCACGTGAAGGCAAAGCGGAACTC 2393 ||||||||| |||||||| |||||||| |||||||||||||||||||| ||||| ||||| Sbjct 2161 TAAGGACGCAGAAGTGGCATACATTGTTGGACACGGTCACGTGAAGGCGAAGCGCAACTC 2220 Query 2394 AGTGTTTGTAAAACAGCT-GGTGGTAAACGTAGCGTACTCGTTCTTGAGGAAGAATTGCC 2452 || ||||| |||| | | ||| ||||||| || |||||||||||||||||||||||| Sbjct 2221 GGTATTTGTGAAAC-GTTTGGTCATAAACGTGGCTTACTCGTTCTTGAGGAAGAATTGCA 2279 Query 2453 GGAGCCCAGGCGTGATGTTGAATATTCCTCACATTTGTTTGATCAAAGTGGGCATGAACT 2512 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2280 GAAGCCCAGGCGTGATGTTAAATATTCCTCACATTTGTTTGATCAAAGTGGGCATGAACT 2339 Query 2513 ATTACTTGTAAGTGAGAGttttt 2535 ||||||||||| ||||||||||| Sbjct 2340 ATTACTTGTAACTGAGAGTTTTT 2362 > Ahg947559 jgi|Araly1|947559|scaffold_703788.1 Length=205 Score = 69.4 bits (37), Expect = 1e-10 Identities = 41/43 (95%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 2805 ATGTCAGAAGTGGGATTTGAACCCACGCCCTCTTACGAGGACC 2847 |||||| ||||||| |||||||||||||||||||||||||||| Sbjct 99 ATGTCAAAAGTGGGGTTTGAACCCACGCCCTCTTACGAGGACC 57 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107452581145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5