BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24100.1
Length=2782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945696 jgi|Araly1|945696|scaffold_701925.1 3445 0.0
Ahg489919 jgi|Araly1|489919|fgenesh2_kg.6__3053__AT4G10730.1 1454 0.0
> Ahg945696 jgi|Araly1|945696|scaffold_701925.1
Length=2179
Score = 3445 bits (1865), Expect = 0.0
Identities = 2084/2188 (95%), Gaps = 22/2188 (1%)
Strand=Plus/Plus
Query 128 TTTTAAAGCGACGGAAGAAGAtggtgggaggaggaggaggtagtagtggtcgtggtggtg 187
||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 1 TTTTAAAGCGACGGAAGAAGATGGTGGGAGGAGGA--A-GTAGTAGTGGTGGTGGTGGTG 57
Query 188 --gt-agtggtagtggtagtagtaAGCAGCAGAGAGGTTTCTCTATGAATCCTAAAGACT 244
| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |
Sbjct 58 TTTTCCGTGGTGGTGGTAGTGGTAAGCAGCAGAGAGGTTTCTCTTTGAATCCTAAAGATT 117
Query 245 ATAAGCTAATGGAAGAAATAGGCCATGGAGCTAGCGCTGTTGTCTATCGAGCGATCTATC 304
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATAAGCTTTTGGAAGAAATAGGCCATGGAGCTAGCGCTGTTGTCTATCGAGCGATCTATC 177
Query 305 TCCCTACTAATGAAGTCGTCGCCATCAAGTGTTTGGATCTCGATCGCTGCAATAGCAATC 364
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCCCGACTAATGAAGTCGTCGCCATCAAGTGTTTGGATCTCGATCGCTGCAATAGCAATC 237
Query 365 TGGATGATATTAGGAGGGAATCTCAGACTATGAGTTTGATAGACCATCCCAACGTTATAA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TGGATGATATTAGGAGGGAATCTCAGACTATGAGTTTGATAGACCATCCCAACGTTATAA 297
Query 425 AGTCGTTTTGTTCATTCTCTGTCGACCATAGTCTTTGGGTTGTTATGCCATTCATGGCTC 484
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 298 AGTCGTTTTGTTCATTTTCTGTCGACCACAGTCTTTGGGTTGTTATGCCATTCATGGCGC 357
Query 485 AAGGTTCGTGTTTGCATCTTATGAAGACTGCGTATTCAGACGGATTTGAAGAGTCTGCTA 544
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 358 AAGGTTCATGTTTGCATCTTATGAAGACTGCATATTCAGACGGATTTGAAGAGTCGGCTA 417
Query 545 TATGTTGTGTA-TTAAAAGAAACTCTTAAAGCTCTTGATTATCTTCATAGACAAGGCCAT 603
| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 418 TTTGTTGTGTACTTAAA-GAAACTCTTAAAGCTCTTGATTATCTTCATAAACAAGGCCAT 476
Query 604 ATCCATCGGGATGTTAAGGCTGGAAACATACTTCTTGATGACAATGGTGAGATTAAGCTT 663
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 477 ATCCATCGGGATGTGAAGGCTGGAAACATACTTCTTGATGACAGTGGTGAGATTAAGCTT 536
Query 664 GGCGATTTTGGTGTCTCTGCTTGCTTGTTTGATAACGGTGATAGGCAACGTGCTAGAAAC 723
||||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||||||
Sbjct 537 GGCGATTTTGGCGTCTCTGCTTGCTTGTTTGACAACGGTGATAGGCGACGTGCAAGAAAC 596
Query 724 ACATTTGTTGGTACTCCTTGCTGGATGGCACCGGAAGTTTTGCAGCCGGGA-AATGGATA 782
|||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 597 ACATTTGTTGGTACTCCTTGCTGGATGGCACCGGAAGTCTTGCAGCCGGGAGAA-GGATA 655
Query 783 CAATTCCAAGGCTGATATCTGGTCATTTGGTATAACAGCACTTGAATTGGCCCATGGTCA 842
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 656 CAATTCCAAGGCTGATATCTGGTCATTTGGTATAACAGCTCTTGAACTGGCCCATGGTCA 715
Query 843 TGCACCTTTCTCAAAATATCCTCCCATGAAGGTGCTCCTAATGACTATTCAAAACGCACC 902
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 716 TGCACCTTTCTCAAAATATCCCCCCATGAAGGTGCTCCTAATGACTATTCAAAACGCACC 775
Query 903 TCCTGGCCTTGATTATGACCGTGATAAGAAATTTTCTAAGTCCTTTAAAGAAATGGTTGC 962
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 776 TCCTGGTCTTGATTATGATCGTGATAAGAAATTTTCGAAGTCCTTTAAAGAAATGGTTGC 835
Query 963 AATGTGTTTGGTGAAAGATCAAACAAAAAGGCCAACTGCTGAAAAACTGCTGAAGCACTC 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AATGTGTTTGGTGAAAGATCAAACAAAAAGGCCAACTGCTGAAAAACTGCTGAAGCACTC 895
Query 1023 CTGTTTCAAACACACGAAGCCTCCAGAGCAAACTGTGAAAATTTTATTTTCCGATTTACC 1082
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 896 ATGTTTCAAACACACGAAGCCTCCAGAGCTTTCTGTGAAAAAATTATTTTCCGATTTACC 955
Query 1083 ACCTCTTTGGACACGTGTAAAATCTCTTCAGGATAAGGATGCTCAACAGCTTGCATTAAA 1142
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ACCTCTTTGGACACGAGTAAAATCTCTTCAGGATAAGGATGCTCAACAGCTTGCATTAAA 1015
Query 1143 GAGAATGGCCACTGCTGACGAGGAAGCTATATCACAGAGCGAATACCAAAGAGGAGTGAG 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GAGAATGGCCACTGCTGACGAGGAAGCTATATCACAGAGCGAATACCAAAGAGGAGTGAG 1075
Query 1203 CGCTTGGAACTTTGACGTCAGAGACTTGAAAACACAAGCATCTTTGTTAATTGATGATGA 1262
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CGCTTGGAATTTTGACGTCAGAGACTTGAAAACACAAGCATCTTTGTTAATTGATGATGA 1135
Query 1263 TGATCTAGAAGAGAGTAAGGAAGATGAAGAAATATTATGTGCACAGTTTAATAAGGTGAA 1322
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1136 TGATCTAGAAGAGAGTAAGGAAGATGATGAAATATTATGTGCACAGTTTAATAAGGTGAA 1195
Query 1323 TGACAGAGAGCAAGTATTTGATAGTCTGCAACTATATGAAAACATGAACGGAAAAGAAAA 1382
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1196 TGACAGAGTGCAAGTATTTGATAGTCTGCAACTATATGAAACCATGAACGAAAAAGAAAA 1255
Query 1383 GGTTTCCAATACTGAGGTGGAAGAACCAACCTGCAAAGAGAAATTCACTTTCGTTACAAC 1442
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1256 GGTTTCCAATACTGAGGTGGAAGAACCAACCTGCGAAGAGAAATTCACTTTCATTACAAC 1315
Query 1443 TACTTCTTCTTTAGAACGAATGTCACCAAATTCAGAGCATGACATTCCCGAGGCCAAGGT 1502
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1316 TGCTTCTTCTTTAGAACGAATGTCACCAAATTCAGAGCATGACATTCCTGAGGCCAAGGT 1375
Query 1503 TAAGCCATTAAGACGCCAAAGTCAGAGTGGACCACTTACAAGCAGGACTGTATTAAGCCA 1562
||||||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 1376 TAAGCCAGTAAGACGCCAAAGCCAGAGTGGACCACTTACAAGCAAGACCGTATTAAGCCA 1435
Query 1563 CTCGGCTTCAGAGAAAAGT-CATATCTTTGAAAGATCCGAGAGTGAACCGCAGACGGCAC 1621
||| |||||||| ||||| |||||||||||||||||||||||||||| |||||| |||
Sbjct 1436 CTCAGCTTCAGA-AAAAGGGCATATCTTTGAAAGATCCGAGAGTGAACAGCAGACAGCAT 1494
Query 1622 CAACAGTCCGAAGAGCACCCAGCTTTAGTGGTCCTTTGAATCTTTCAACCCGTGCTTCTT 1681
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1495 CAACAGTCCGAAGAGCACCCAGCTTTAGTGGTCCTTTGAATCTTCCAACCCGTGCTTCTT 1554
Query 1682 CAAACAGTTTGTCTGCTCCCATCAAATACTCAGGAGGATTCCGTGATTCTCTGGATGATA 1741
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAAACAGTTTGTCAGCTCCCATTAAATACTCAGGAGGATTCCGTGATTCTCTGGATGATA 1614
Query 1742 AGTCAAAGGCTAATCTGGTTCAGAAAGGACGATTTTCAGTAACATCAGGAAATGTAGATC 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 AGTCAAAGGCTAATCTGGTTCAGAAAGGACGATTTTCAGTAACATCAGGAAATGTAGATC 1674
Query 1802 TTGCGAAGGATGTTCCATTAAGTATAGTCCCTCGTCGATCTCCACAGGCGACCCCCCTGA 1861
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1675 TTGCGAAGGATGTTCCATTAAGTATTGTCCCTCGTCGATCTCCGCAGGCGACCCCTCTGA 1734
Query 1862 GAAAATCTGCAAGTGTGGGTAACTGGATACTTGAGCCCAAAATGCCAACAGCTCAGCCTC 1921
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 AAAAATCTGCAAGTGTGGGTAACTGGATACTTGAGCCCAAAATGCCAACAGCTCAGCCTC 1794
Query 1922 AGACGATCAAGGAGCATAGTAGCCATCCTACGTCTTCCTCA-CC-CA-TCAT-G--CCTC 1975
||| ||||||||| ||||||||||||||||||||||||| || || | || | ||||
Sbjct 1795 CGACCATCAAGGAGTATAGTAGCCATCCTACGTCTTCCTCTTCCTCACTTATCGTGCCTC 1854
Query 1976 AACTTCAACATCTATTCCAGCAAAACTCAATACAACAGGATCTTATTATGAATTTACTAA 2035
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1855 AACTTCAACATCTATTCCAGCAAAACTCAATACAACAGGATCTTATTATGAATTTACTGA 1914
Query 2036 ATAGCTTACAACCCGTGGAGGCAACAGAAGGTTCTCAATCTGGGAAGTTACCACCTTTGC 2095
||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 ATAGCATACAACCTGCGGAGGCAACAGAAGGTTCTCAATCTGGGAAGTTACCACCTTTGC 1974
Query 2096 CTCGCTCAGACAGTAATGGAAACGTTGAACCTGTGGCTTCAGAGAGGGAGAGGTTACTTC 2155
|||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 1975 CTCGCTCAGACAGTAATGGAAATGTTGAACCCGTGGCTTCTGAGAGGGAGAGGTTACTTC 2034
Query 2156 TTAGCAGTATCTCCGACCTCCGTGCTAGGCTGGACGACTTAACGGAGGAACTCGATATAG 2215
||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 2035 TTAGCAGTATCTCTGACCTTCGTGCTAGGCTGGATGACTTAACGGAGGAACTGGATATAG 2094
Query 2216 AGAAATCAAAATACAGCCAACTGCAACAGAAATTGAAAGCATTCACGGGTCGCGAACACT 2275
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 2095 AGAAATCAAAATACAGCCAACTGCAACAGAAATTGAAAGCATTTACAGGTCGCGAACA-T 2153
Query 2276 AAGTGTAACCAGA-GGGAAAGCGACACT 2302
|||||| |||| ||||||||||||||
Sbjct 2154 --GTGTAAGCAGAAGGGAAAGCGACACT 2179
> Ahg489919 jgi|Araly1|489919|fgenesh2_kg.6__3053__AT4G10730.1
Length=2543
Score = 1454 bits (787), Expect = 0.0
Identities = 1382/1661 (83%), Gaps = 74/1661 (4%)
Strand=Plus/Plus
Query 188 gtagtggtagtggtagtagtaAGCAGCAGAGAGGTTTCTCTATGAATCCTAAAGACTATA 247
|||||||| ||| || || ||| || ||| |||||||||| | || |||||||| ||||
Sbjct 136 GTAGTGGTGGTGATA--AG-AAGAAGAAGAAAGGTTTCTCTGTAAACCCTAAAGATTATA 192
Query 248 AGCTAATGGAAGAAATAGGCCATGGAGCTAGCGCTGTTG-TCTATCGAGCGATCTATCTC 306
| || ||||||||| | || |||| ||||| ||||||| || |||| || || |||||
Sbjct 193 AACTTATGGAAGAAGTTGGATATGGTGCTAGTGCTGTTGTTC-ATCGTGCTATTTATCTT 251
Query 307 CCTACTAATGAAGTCGTCGCCATCAAGTGTTTGGATCTCGATCGCTGCAATAGCAATCTG 366
|| || |||||||| || || |||||||||||||||||||||||||||||||| ||||||
Sbjct 252 CCGACCAATGAAGTTGTTGCTATCAAGTGTTTGGATCTCGATCGCTGCAATAGTAATCTG 311
Query 367 GATGATATTAGGAGGGAATCTCAGACTATGAGTTTGATAGACCATCCCAACGTTATAAAG 426
|||||||| |||||||| |||||||| ||| ||||||||||||||| || |||||||||
Sbjct 312 GATGATATAAGGAGGGAGGCTCAGACTTTGACTTTGATAGACCATCCGAATGTTATAAAG 371
Query 427 TCGTTTTGTTCATTCT-CTGTCGACCAT-AGTCTTTGGGTTGTTATGCCATTCATGGCTC 484
||||||||||| || | |||| || ||| | ||||||||| || |||||||| |||||||
Sbjct 372 TCGTTTTGTTCGTT-TGCTGTTGATCATCA-TCTTTGGGTCGTCATGCCATTTATGGCTC 429
Query 485 AAGGTTCGTGTTTGCATCTTATG-AAGACTGCGTATTCAGACGGATTTGAAGAGTCTGCT 543
| ||||||||||||||||| ||| ||| | |||||| |||| |||||||||||| | |||
Sbjct 430 AGGGTTCGTGTTTGCATCTAATGAAAG-CAGCGTATCCAGATGGATTTGAAGAGGCGGCT 488
Query 544 ATATGTTGTGTATTAAAAGAAACTCTTAAAGCTCTTGATTATCTTCATAGACAAGGCCAT 603
||||||| | | | |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 489 ATATGTTCTATGCTGAAAGAAACACTTAAAGCTCTTGATTATCTTCATAGACAAGGGCAT 548
Query 604 ATCCATCGGGATGTTAAGGCTGGAAACATACTTCTTGATGACAATGGTGAGATTAAGCTT 663
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 549 ATCCATCGAGATGTTAAGGCTGGAAACATACTTCTTGATGACACTGGTGAGATTAAG-TT 607
Query 664 -GGCGATTTTGGTGTCTCTGCTTGCTTGTTTGATAACGGTGATAGGCAACGTGCTAGAAA 722
|| ||||||||||| ||||| ||||||||||| || || |||||||||||||| |||||
Sbjct 608 AGGTGATTTTGGTGTTTCTGCGTGCTTGTTTGACAATGGCGATAGGCAACGTGCAAGAAA 667
Query 723 CACATTTGTTGGTACTCCTTGCTGGATGGCACCGGAAGTTTTGCAGCC-GGGAAATGGAT 781
|||||||||||||||||| |||||||||||||||||||| |||||||| |||| |||||
Sbjct 668 CACATTTGTTGGTACTCCATGCTGGATGGCACCGGAAGTCTTGCAGCCAGGGAG-TGGAT 726
Query 782 ACAATTCCAAGGCTGATATCTGGTCATTTGGTATAACAGCACTTGAA-TTGGCCCATGGT 840
|| |||| ||||||||||||||||| ||||| |||||||| ||| | ||||| || |||
Sbjct 727 ACGATTCAAAGGCTGATATCTGGTCTTTTGGAATAACAGCG-TTGGAGTTGGCTCACGGT 785
Query 841 CATGCACCTTTCTCAAAATATCCTCCC-ATGAAGGTGCTCCTAATGACTATTCAAAACGC 899
||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||| ||
Sbjct 786 CATGCACCTTTCTCAAAATATCC-CCCTATGAAGGTACTCTTAATGACTATTCAAAATGC 844
Query 900 ACCTCCTGGCCTTGATTATGACCGTGATAAGAAATTTTCTAAGTCCTTTAAAGAAATGGT 959
||| ||||||||| ||||||||||||||||||| ||||| ||||| ||||||||| ||||
Sbjct 845 ACCACCTGGCCTTAATTATGACCGTGATAAGAAGTTTTCAAAGTCTTTTAAAGAATTGGT 904
Query 960 TGCAATGTGTTTGGTGAAAGATCAAACAAAAAGGCCAACTGCTGAAAAACTGCTGAAGCA 1019
||| ||||| ||||||||||||||||||||||||| |||||||||||| || |||| ||
Sbjct 905 AGCATTGTGTCTGGTGAAAGATCAAACAAAAAGGCCGACTGCTGAAAAATTGTTGAAACA 964
Query 1020 CTCCTGTTTCAA-ACACACGAAGCCTCCAGAGCAAACTGTG--AAAATTTTATTT-TCCG 1075
||| | |||||| | | | |||||||| ||| | ||||| |||| |||||| || |
Sbjct 965 CTCATTTTTCAAGA-ATGCAAAGCCTCCGGAG-AT-CTGTGTGAAAAAATTATTTGTC-G 1020
Query 1076 ATTTACCACCTCTTTGGACACGTGTAAAATCTCTTCAGGATAAGGATGCT-CAACAGCTT 1134
|||||||||||||||||||||| |||||| ||||||||| ||||||||| || ||||||
Sbjct 1021 ATTTACCACCTCTTTGGACACGCGTAAAAGCTCTTCAGGCCAAGGATGCTGCA-CAGCTT 1079
Query 1135 GCATT-AAAGAGAATGGCCACTGCTGACGAGGAAGCTATATCACAGAGCGAATACCAAAG 1193
|| || |||| |||||||| |||||||| |||| |||||||||||||| |||||||||||
Sbjct 1080 GCTTTGAAAG-GAATGGCCTCTGCTGACCAGGATGCTATATCACAGAGTGAATACCAAAG 1138
Query 1194 AGGAGTGAGCGCTTGGAACTTTGACGTCAGA-GACTTGAAA-ACACAAGCATCTTTGTTA 1251
|||||| || ||||||||||| | || || || |||||| | ||||||||| ||| ||
Sbjct 1139 AGGAGTAAGTGCTTGGAACTTCAATATC-GAAGATTTGAAAGA-ACAAGCATCCTTGCTA 1196
Query 1252 -ATTGATGATGATGATCT-AGA-AGAGAGTAAGGAAGATGAAGAAATATTATGTGC-A-C 1306
|| |||||||| || | | | |||||||| |||||| |||||| | | || || | |
Sbjct 1197 GAT-GATGATGAC-ATTTTA-ACAGAGAGTAGGGAAGAAGAAGAA-TCTCCTG-GCGAAC 1251
Query 1307 AGTT---TAATAAGGTGAATGACAGAGAGCAAGTATTTGATAGTCTGCAACTATATGAAA 1363
|||| |||||||||||||||||||| |||||||| || ||||| | |||| |||||
Sbjct 1252 AGTTGCATAATAAGGTGAATGACAGAGGGCAAGTATCTGGTAGTCAGTTGCTATCTGAAA 1311
Query 1364 ACATGAACGGAAAAGAAAAGGTTTCCA-ATACTGAGGTGGAAGAACCAACCTGCAAAGAG 1422
||||||| ||||| ||||| ||||| | |||||||||||| |||||| | ||| |||||
Sbjct 1312 ACATGAATGGAAAGGAAAAAGTTTC-AGATACTGAGGTGGTAGAACCTATCTGTGAAGAG 1370
Query 1423 AAATTCACTTTCG-TTACAACTACTTCTTCTTTAGAACGAAT-GTCACCAAATTCAGAGC 1480
|||| |||| || || |||| |||||||| | |||| || | |||||| |||||| |
Sbjct 1371 AAATCCACTCTCAATT-CAACCGCTTCTTCTGTGGAAC-AAGCGGCACCAAGTTCAGAAC 1428
Query 1481 ATGACATTCC-CGAGGCCAAGGTTAAGCCATTAAGACGCCAAAGTCAGAGTGGACCACTT 1539
| || |||| | |||| |||| ||||||| | |||||||| | ||| ||||||||||||
Sbjct 1429 AAGATGTTCCAC-AGGCTAAGGGTAAGCCAGTGAGACGCCAGACTCATAGTGGACCACTT 1487
Query 1540 ACAAGCAGGACT-GTATTAAGCCACT-CGG-CTTCAGAGAAAAGTCATATCTT-TGAAAG 1595
|| | || | || |||| | | | | | || ||||||| ||| | || ||||||
Sbjct 1488 TCATCC-GGTGTTGTTTTAATC-AGTTCAGACT-CAGAGAAGGGTCCTGG-TTATGAAAG 1543
Query 1596 ATCCGAGAGTGAACCGCAGACGGCAC-CAACAGTCCGAAGAGCACCCAGCTTTAGTGGTC 1654
|| |||||||||| |||| | | | || ||||||| |||||||||||| |||||||||
Sbjct 1544 GTCTGAGAGTGAACGGCAG-CTGAAATCATCAGTCCGGAGAGCACCCAGCCTTAGTGGTC 1602
Query 1655 CTTTGAATCTTTCAACCCGTGCTTCTTCAAACAGTTTGTCTGCTCCCATCAAATACT-CA 1713
||||||||||| ||| |||||||| | |||||||| || ||||| ||||||| || |
Sbjct 1603 CTTTGAATCTTCCAAATCGTGCTTCAGCGAACAGTTTTTCAGCTCCTATCAAAT-CTTCT 1661
Query 1714 GGAGGATTCCGTGATTCTCTGGATGATAAGTCAAAGGCTAATCTGGTTCAGA--AA-GGA 1770
||||||||| |||||||| | ||||| ||||| ||| ||||| ||||||| | || |||
Sbjct 1662 GGAGGATTCTGTGATTCTATAGATGACAAGTCGAAGACTAATGTGGTTCAAATCAAAGGA 1721
Query 1771 CGATTTTCAGTAACATCAGGAAA-TGTAGATCTTGCGAAGG 1810
|||||||||||||||||| ||| | | |||||||| ||||
Sbjct 1722 AGATTTTCAGTAACATCAGAAAACT-TGGATCTTGC-AAGG 1760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104976715220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5